RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJDB12134" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJDB12134 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2549991 2549991 PRJDB12134_P_NODE_2823_length_666_cov_2.089376_g2698_i0 PRJDB12134 2823 666 2.089376 13.91524416 Anaeromyxobacter sp. Fw109-5 404589 Bacteria Bacteria 233 2.2099999999999997e-56   NTclustered gi|152026452|gb|CP000769.1| 404589 g2698 i0 79.641 4.75525525525526 334 60 50 7 1 330 3810930 3810601 Anaeromyxobacter sp. Fw109-5, complete genome blastn 3167 233 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter sp. Fw109-5
12753611 12753611 PRJDB12134_P_NODE_3311_length_611_cov_1.752788_g3182_i0 PRJDB12134 3311 611 1.752788 10.70953468 Cystobacter fuscus 43 Bacteria Bacteria 586 1.3399999999999995e-162   NTclustered gi|1243034522|gb|CP022098.1| 43 g3182 i0 89.588 71.7839607201309 461 48 75 0 3 463 8623845 8623385 Cystobacter fuscus strain DSM 52655 chromosome, complete genome blastn 43860 586 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus
24225886 24225886 PRJDB12134_P_NODE_13540_length_246_cov_1.803468_g13405_i0 PRJDB12134 13540 246 1.803468 4.43653128 Corallococcus interemptor 2316720 Bacteria Bacteria 344 3.27e-90   NTclustered gi|2809283937|gb|CP102579.1| 2316720 g13405 i0 91.87 96.1951219512195 246 20 100 0 1 246 2013463 2013218 Corallococcus interemptor strain YZPH-2 chromosome, complete genome blastn 23664 344 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus interemptor

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;