RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJDB12134" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJDB12134 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3826327 3826327 PRJDB12134_P_NODE_9364_length_301_cov_1.697368_g9229_i0 PRJDB12134 9364 301 1.697368 5.10907768 Candidatus Promineifilum breve 1806508 Bacteria Bacteria 359 1.4699999999999998e-94   NTclustered gi|1041165931|emb|LN890655.2| 1806508 g9229 i0 88.158 180.06976744186 304 32 100 4 1 301 598117 598419 Ardenticatena sp. Cfx-K strain Cfx-K genome assembly, chromosome: I blastn 54201 359 1 Bacteria   Bacillati Chloroflexota Ardenticatenia Candidatus Promineifilales Candidatus Promineifilaceae Candidatus Promineifilum Candidatus Promineifilum breve
11183953 11183953 PRJDB12134_P_NODE_6409_length_402_cov_1.355623_g6274_i0 PRJDB12134 6409 402 1.355623 5.44960446 Caldilineaceae 475964 Bacteria Bacteria 536 8.729999999999998e-148   NTclustered gi|470476010|ref|NR_076314.1| 133453 g6274 i0 90.796 55.1616915422886 402 35 100 2 1 402 1282 1681 Caldilinea aerophila strain STL-6-O1 23S ribosomal RNA gene, complete sequence blastn 22175 536 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae Caldilinea Caldilinea aerophila
12753550 12753550 PRJDB12134_P_NODE_13611_length_246_cov_0.901734_g13476_i0 PRJDB12134 13611 246 0.901734 2.21826564 Candidatus Promineifilum breve 1806508 Bacteria Bacteria 278 3.37e-70   NTclustered gi|1041165931|emb|LN890655.2| 1806508 g13476 i0 87.5 50.2032520325203 240 30 98 0 2 241 597679 597440 Ardenticatena sp. Cfx-K strain Cfx-K genome assembly, chromosome: I blastn 12350 278 1 Bacteria   Bacillati Chloroflexota Ardenticatenia Candidatus Promineifilales Candidatus Promineifilaceae Candidatus Promineifilum Candidatus Promineifilum breve
24225889 24225889 PRJDB12134_P_NODE_13600_length_246_cov_0.901734_g13465_i0 PRJDB12134 13600 246 0.901734 2.21826564 Chloroflexus aurantiacus 1108 Bacteria Bacteria 152 2.13e-32   NTclustered gi|163666892|gb|CP000909.1| 324602 g13465 i0 86.62 37.3983739837398 142 14 57 5 51 190 4903187 4903325 Chloroflexus aurantiacus J-10-fl, complete genome blastn 9200 152 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Chloroflexaceae Chloroflexus Chloroflexus aurantiacus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;