RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJDB12134" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJDB12134 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8927163 8927163 PRJDB12134_P_NODE_4488_length_511_cov_1.255708_g4355_i0 PRJDB12134 4488 511 1.255708 6.41666788 Fervidobacterium gondwanense 44754 Bacteria Bacteria 743 0   NTclustered gi|2793121053|gb|CP126498.1| 44754 g4355 i0 93.587 424.559686888454 499 31 100 1 13 511 974940 974443 Fervidobacterium gondwanense strain 13770 chromosome, complete genome blastn 216950 743 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium gondwanense
10203070 10203070 PRJDB12134_P_NODE_9729_length_293_cov_1.890909_g9594_i0 PRJDB12134 9729 293 1.890909 5.54036337 Deinococcus sp. NW-56 2080419 Bacteria Bacteria 209 1.52e-49   NTclustered gi|1339790003|gb|CP026516.1| 2080419 g9594 i0 93.571 2.10238907849829 140 9 48 0 1 140 1344538 1344677 Deinococcus sp. NW-56 chromosome, complete genome blastn 616 209 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. NW-56
15008518 15008518 PRJDB12134_P_NODE_13192_length_248_cov_0.891429_g13057_i0 PRJDB12134 13192 248 0.891429 2.21074392 Deinococcus 1298 Bacteria Bacteria 198 2.7199999999999993e-46   NTclustered gi|429128598|gb|CP003382.1| 937777 g13057 i0 83.182 3.49193548387097 220 33 88 4 28 245 1316752 1316535 Deinococcus peraridilitoris DSM 19664, complete genome blastn 866 198 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus peraridilitoris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;