RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJDB12134" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJDB12134 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1274224 1274224 PRJDB12134_P_NODE_10942_length_274_cov_2.572139_g10807_i0 PRJDB12134 10942 274 2.572139 7.04766086 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 281 2.95e-71   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g10807 i0 85.714 4.71897810218978 266 38 97 0 1 266 3216294 3216559 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 1293 281 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
1274265 1274265 PRJDB12134_P_NODE_13842_length_245_cov_0.901163_g13707_i0 PRJDB12134 13842 245 0.901163 2.20784935 Candidatus Rhabdochlamydia porcellionis 225148 Bacteria Bacteria 388 1.48e-103   NTclustered gi|2082223669|gb|CP075585.1| 225148 g13707 i0 95.473 1.98367346938776 243 11 99 0 3 245 1051096 1050854 Candidatus Rhabdochlamydia porcellionis strain 15C chromosome, complete genome blastn 486 388 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae Candidatus Rhabdochlamydia Candidatus Rhabdochlamydia porcellionis
6083794 6083794 PRJDB12134_P_NODE_10925_length_275_cov_1.435644_g10790_i0 PRJDB12134 10925 275 1.435644 3.948021 Prosthecobacter 48463 Bacteria Bacteria 331 2.9000000000000006e-86   NTclustered gi|183579826|emb|AM905423.1| 48465 g10790 i0 89.051 282.025454545455 274 20 99 5 1 274 1507 1770 Prosthecobacter dejongeii partial 23S rRNA gene, strain DSM12251 blastn 77557 331 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter dejongeii
19125584 19125584 PRJDB12134_P_NODE_13756_length_245_cov_0.906977_g13621_i0 PRJDB12134 13756 245 0.906977 2.22209365 uncultured Planctomycetales bacterium 100371 Bacteria Bacteria 409 1.1399999999999998e-109   NTclustered gi|219903967|emb|AM935706.1| 100371 g13621 i0 97.119 104.379591836735 243 6 99 1 1 242 775 1017 Uncultured Planctomycetales bacterium partial 16S rRNA gene, clone AMCA8 blastn 25573 409 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales     uncultured Planctomycetales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;