{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where tax_clade = \"Human endogenous retroviruses\"", "rows": [[22640150, "PRJNA981359_S_NODE_60618_length_260_cov_1.374332_g60518_i0", "PRJNA981359", "60618", "260", "1.374332", "3.5732632", "Human endogenous retrovirus K", "45617", "Viruses", "Viruses", "54.3", "3.91e-6", "", "NR", "CAA76882.1", "45617", "g60518", "i0", "61.4", "5.58461538461538", "44", "17", "50.8", "0", "128", "259", "571", "614", "CAA76882.1 pol protein [Human endogenous retrovirus K]", "diamond", "1452", "54.3", "1", "Viruses", "Human endogenous retroviruses", "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", null, "Human endogenous retrovirus K"], [27279253, "PRJNA981359_S_NODE_46163_length_289_cov_0.842593_g46063_i0", "PRJNA981359", "46163", "289", "0.842593", "2.43509377", "Human endogenous retrovirus K", "45617", "Viruses", "Viruses", "88.6", "2.64e-19", "", "NR", "ABA28250.1", "45617", "g46063", "i0", "52.9", "5.26297577854671", "85", "40", "88.2", "0", "257", "3", "101", "185", "ABA28250.1 protease, partial [Human endogenous retrovirus K]", "diamond", "1521", "88.6", "1", "Viruses", "Human endogenous retroviruses", "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", null, "Human endogenous retrovirus K"], [27294830, "PRJNA1241156_S_NODE_48243_length_280_cov_4.987342_g47783_i0", "PRJNA1241156", "48243", "280", "4.987342", "13.9645576", "Human endogenous retrovirus K", "45617", "Viruses", "Viruses", "70.5", "1.04e-11", "", "NR", "CAA76882.1", "45617", "g47783", "i0", "49.3", "4.82142857142857", "75", "38", "80.4", "0", "235", "11", "199", "273", "CAA76882.1 pol protein [Human endogenous retrovirus K]", "diamond", "1350", "71.2", "0.990168539325843", "Viruses", "Human endogenous retroviruses", "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", null, "Human endogenous retrovirus K"], [27595171, "PRJNA982720_S_NODE_9184_length_247_cov_0.839080_g9156_i0", "PRJNA982720", "9184", "247", "0.83908", "2.0725276", "Human endogenous retrovirus K", "45617", "Viruses", "Viruses", "106", "2.07e-26", "", "NR", "ABA28250.1", "45617", "g9156", "i0", "63", "3.93522267206478", "81", "30", "98.4", "0", "244", "2", "101", "181", "ABA28250.1 protease, partial [Human endogenous retrovirus K]", "diamond", "972", "106", "1", "Viruses", "Human endogenous retroviruses", "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", null, "Human endogenous retrovirus K"], [27749872, "PRJNA835051_S_NODE_82364_length_183_cov_0.792857_g82068_i0", "PRJNA835051", "82364", "183", "0.792857", "1.45092831", "Multiple sclerosis associated retrovirus", "62805", "Viruses", "Viruses", "59.3", "2.44e-8", "", "NR", "AAB66528.1", "62805", "g82068", "i0", "59.6", "0.852459016393443", "52", "21", "85.2", "0", "25", "180", "81", "132", "AAB66528.1 polyprotein, partial [Multiple sclerosis associated retrovirus]", "diamond", "156", "59.3", "1", "Viruses", "Human endogenous retroviruses", "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", null, "Human endogenous retrovirus W"], [28037155, "PRJNA981359_S_NODE_20425_length_359_cov_0.727273_g20325_i0", "PRJNA981359", "20425", "359", "0.727273", "2.61091007", "HERV-H/env6", "57282", "Viruses", "Viruses", "78.6", "3.8e-14", "", "NR", "CAB94193.2", "129526", "g20325", "i0", "43.7", "0.994428969359331", "119", "67", "99.4", "0", "357", "1", "366", "484", "CAB94193.2 envelope protein [HERV-H/env60]", "diamond", "357", "78.6", "1", "Viruses", "Human endogenous retroviruses", "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", null, "Human endogenous retrovirus H"], [28515968, "PRJNA835051_S_NODE_24467_length_263_cov_2.372727_g24171_i0", "PRJNA835051", "24467", "263", "2.372727", "6.24027201", "root", "1", "Root_unresolved", "Root_unresolved", "70.9", "6.04e-12", "", "NR", "CAA76882.1", "45617", "g24171", "i0", "39.1", "5.97718631178707", "87", "53", "99.2", "0", "261", "1", "329", "415", "CAA76882.1 pol protein [Human endogenous retrovirus K]", "diamond", "1572", "70.9", "1", "Viruses", "Human endogenous retroviruses", "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", null, "Human endogenous retrovirus K"], [29286593, "PRJNA473799_P_NODE_35309_length_251_cov_0.865169_g35035_i0", "PRJNA473799", "35309", "251", "0.865169", "2.17157419", "Multiple sclerosis associated retrovirus element", "89382", "Viruses", "Viruses", "47", "1.33e-4", "", "NR", "AAD48372.1", "89382", "g35035", "i0", "46", "0.597609561752988", "50", "27", "59.8", "0", "159", "10", "1", "50", "AAD48372.1 unknown protein U5/1 [Multiple sclerosis associated retrovirus element]", "diamond", "150", "47", "1", "Viruses", "Human endogenous retroviruses", "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", null, "Human endogenous retrovirus W"], [29300022, "PRJNA981359_S_NODE_70229_length_246_cov_0.867052_g70129_i0", "PRJNA981359", "70229", "246", "0.867052", "2.13294792", "Human endogenous retrovirus K", "45617", "Viruses", "Viruses", "75.5", "1.01e-13", "", "NR", "CAA71418.1", "45617", "g70129", "i0", "66.7", "7.68292682926829", "63", "21", "76.8", "0", "206", "18", "224", "286", "CAA71418.1 gag protein, partial [Human endogenous retrovirus K]", "diamond", "1890", "75.5", "1", "Viruses", "Human endogenous retroviruses", "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", null, "Human endogenous retrovirus K"], [29442404, "PRJNA312615_P_NODE_32490_length_215_cov_0.861446_g32339_i0", "PRJNA312615", "32490", "215", "0.861446", "1.8521089", "Multiple sclerosis associated retrovirus element", "89382", "Viruses", "Viruses", "41.6", "0.00877", "", "NR", "AAD48373.1", "89382", "g32339", "i0", "55.9", "0.474418604651163", "34", "15", "47.4", "0", "102", "1", "14", "47", "AAD48373.1 unknown protein U5/2 [Multiple sclerosis associated retrovirus element]", "diamond", "102", "41.6", "1", "Viruses", "Human endogenous retroviruses", "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", null, "Human endogenous retrovirus W"], [30057779, "PRJNA981359_S_NODE_58631_length_264_cov_0.816754_g58531_i0", "PRJNA981359", "58631", "264", "0.816754", "2.15623056", "Human endogenous retrovirus HCML-ARV", "228277", "Viruses", "Viruses", "90.5", "7.99e-19", "", "NR", "AAP06677.1", "228277", "g58531", "i0", "59.7", "2.61363636363636", "77", "31", "87.5", "0", "264", "34", "25", "101", "AAP06677.1 pol protein [Human endogenous retrovirus HCML-ARV]", "diamond", "690", "91.3", "0.991237677984666", "Viruses", "Human endogenous retroviruses", "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", null, "Human endogenous retrovirus"], [31284102, "PRJNA706190_P_NODE_36575_length_182_cov_0.992481_g36439_i0", "PRJNA706190", "36575", "182", "0.992481", "1.80631542", "Human endogenous retrovirus K", "45617", "Viruses", "Viruses", "72.4", "1.11e-13", "", "NR", "ABA28250.1", "45617", "g36439", "i0", "53.3", "6.90659340659341", "60", "28", "98.9", "0", "3", "182", "52", "111", "ABA28250.1 protease, partial [Human endogenous retrovirus K]", "diamond", "1257", "72.8", "0.994505494505495", "Viruses", "Human endogenous retroviruses", "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", null, "Human endogenous retrovirus K"], [31382602, "PRJNA879221_P_NODE_54156_length_247_cov_0.885057_g54016_i0", "PRJNA879221", "54156", "247", "0.885057", "2.18609079", "Multiple sclerosis associated retrovirus", "62805", "Viruses", "Viruses", "49.3", "1.87e-4", "", "NR", "AAB66528.1", "62805", "g54016", "i0", "61.5", "0.983805668016194", "39", "15", "47.4", "0", "239", "123", "299", "337", "AAB66528.1 polyprotein, partial [Multiple sclerosis associated retrovirus]", "diamond", "243", "49.7", "0.991951710261569", "Viruses", "Human endogenous retroviruses", "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", null, "Human endogenous retrovirus W"]], "truncated": false, "filtered_table_rows_count": 13, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"tax_clade\" = :p0 order by rowid limit 101", "params": {"p0": "Human endogenous retroviruses"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?tax_clade=Human+endogenous+retroviruses", "results": [{"value": "PRJNA981359", "label": "PRJNA981359", "count": 5, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_clade=Human+endogenous+retroviruses&bioproject=PRJNA981359", "selected": false}, {"value": "PRJNA835051", "label": "PRJNA835051", "count": 2, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_clade=Human+endogenous+retroviruses&bioproject=PRJNA835051", "selected": false}, {"value": "PRJNA1241156", "label": "PRJNA1241156", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_clade=Human+endogenous+retroviruses&bioproject=PRJNA1241156", "selected": false}, {"value": "PRJNA312615", "label": "PRJNA312615", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_clade=Human+endogenous+retroviruses&bioproject=PRJNA312615", "selected": false}, {"value": "PRJNA473799", "label": "PRJNA473799", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_clade=Human+endogenous+retroviruses&bioproject=PRJNA473799", "selected": false}, {"value": "PRJNA706190", "label": "PRJNA706190", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_clade=Human+endogenous+retroviruses&bioproject=PRJNA706190", "selected": false}, {"value": "PRJNA879221", "label": "PRJNA879221", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_clade=Human+endogenous+retroviruses&bioproject=PRJNA879221", "selected": false}, {"value": "PRJNA982720", "label": "PRJNA982720", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_clade=Human+endogenous+retroviruses&bioproject=PRJNA982720", "selected": false}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?tax_clade=Human+endogenous+retroviruses", "results": [{"value": "diamond", "label": "diamond", "count": 13, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_clade=Human+endogenous+retroviruses&analysis=diamond", "selected": false}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?tax_clade=Human+endogenous+retroviruses", "results": [{"value": "Viruses", "label": "Viruses", "count": 13, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_clade=Human+endogenous+retroviruses&tax_superkingdom=Viruses", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?tax_clade=Human+endogenous+retroviruses", "results": [{"value": "Human endogenous retroviruses", "label": "Human endogenous retroviruses", "count": 13, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json", "selected": true}], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?tax_clade=Human+endogenous+retroviruses", "results": [{"value": "Pararnavirae", "label": "Pararnavirae", "count": 13, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_clade=Human+endogenous+retroviruses&tax_kingdom=Pararnavirae", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?tax_clade=Human+endogenous+retroviruses", "results": [{"value": "Artverviricota", "label": "Artverviricota", "count": 13, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_clade=Human+endogenous+retroviruses&tax_phylum=Artverviricota", "selected": false}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 1353.5249339911388}