{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where bioproject = \"PRJNA874604\" and tax_phylum = \"Verrucomicrobiota\"", "rows": [[2127071, "PRJNA874604_P_NODE_35662_length_323_cov_1.232000_g35310_i0", "PRJNA874604", "35662", "323", "1.232", "3.97936", "uncultured Verrucomicrobiae bacterium", "412056", "Bacteria", "Bacteria", "409", "1.56e-109", "", "NTclustered", "gi|2874253779|emb|OY969763.1|", "412056", "g35310", "i0", "89.571", "89.7244582043344", "326", "29", "100", "5", "1", "323", "3832266", "3832589", "MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.c.2 genome assembly, chromosome: 1", "blastn", "28981", "409", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Verrucomicrobiia", null, null, null, "uncultured Verrucomicrobiae bacterium"], [2127579, "PRJNA874604_P_NODE_62682_length_261_cov_1.622340_g62330_i0", "PRJNA874604", "62682", "261", "1.62234", "4.2343074", "Pedosphaera", "1032526", "Bacteria", "Bacteria", "112", "6.480000000000001e-27", "", "NR", "MCH2377984.1", "2024890", "g62330", "i0", "62.4", "8.41379310344828", "85", "32", "97.7", "0", "259", "5", "326", "410", "MCH2377984.1 Glu/Leu/Phe/Val dehydrogenase [Pedosphaera sp.]", "diamond", "2196", "112", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Pedosphaerae", "Pedosphaerales", "Pedosphaeraceae", "Pedosphaera", "Pedosphaera sp."], [12331616, "PRJNA874604_P_NODE_75710_length_249_cov_0.875000_g75358_i0", "PRJNA874604", "75710", "249", "0.875", "2.17875", "Akkermansia muciniphila", "239935", "Bacteria", "Bacteria", "460", "3.16e-125", "", "NTclustered", "gi|1805960388|gb|CP029703.1|", "239935", "g75358", "i0", "100", "99.9518072289157", "249", "0", "100", "0", "1", "249", "2158953", "2159201", "Akkermansia muciniphila strain EB-AMDK-46 chromosome, complete genome", "blastn", "24888", "460", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Verrucomicrobiia", "Verrucomicrobiales", "Akkermansiaceae", "Akkermansia", "Akkermansia muciniphila"], [16153938, "PRJNA874604_P_NODE_100113_length_241_cov_0.916667_g99761_i0", "PRJNA874604", "100113", "241", "0.916667", "2.20916747", "Verrucomicrobiales bacterium", "2026801", "Bacteria", "Bacteria", "124", "5.209999999999999e-31", "", "NR", "MDF2376347.1", "2026801", "g99761", "i0", "73.1", "1.95435684647303", "78", "21", "97.1", "0", "8", "241", "649", "726", "MDF2376347.1 cytochrome c [Verrucomicrobiales bacterium]", "diamond", "471", "124", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Verrucomicrobiia", "Verrucomicrobiales", null, null, "Verrucomicrobiales bacterium"], [17429670, "PRJNA874604_P_NODE_20894_length_396_cov_2.993808_g20542_i0", "PRJNA874604", "20894", "396", "2.993808", "11.85547968", "uncultured Verrucomicrobiae bacterium", "412056", "Bacteria", "Bacteria", "453", "8.89e-123", "", "NTclustered", "gi|2874253779|emb|OY969763.1|", "412056", "g20542", "i0", "87.469", "66.8181818181818", "399", "43", "100", "6", "1", "396", "3833088", "3833482", "MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.c.2 genome assembly, chromosome: 1", "blastn", "26460", "453", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Verrucomicrobiia", null, null, null, "uncultured Verrucomicrobiae bacterium"], [21254959, "PRJNA874604_P_NODE_93737_length_243_cov_0.905882_g93385_i0", "PRJNA874604", "93737", "243", "0.905882", "2.20129326", "Oleiharenicola sp. Vm1", "3398393", "Bacteria", "Bacteria", "327", "3.25e-85", "", "NTclustered", "gi|2912653302|gb|CP180537.1|", "3398393", "g93385", "i0", "90.947", "1", "243", "22", "100", "0", "1", "243", "3185334", "3185576", "Oleiharenicola sp. Vm1 chromosome, complete genome", "blastn", "243", "327", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Opitutia", "Opitutales", "Opitutaceae", "Oleiharenicola", "Oleiharenicola sp. Vm1"], [23804221, "PRJNA874604_P_NODE_50659_length_283_cov_1.209524_g50307_i0", "PRJNA874604", "50659", "283", "1.209524", "3.42295292", "Luteolibacter sp. SL250", "2995170", "Bacteria", "Bacteria", "468", "2.19e-127", "", "NTclustered", "gi|2381117106|gb|CP113054.1|", "2995170", "g50307", "i0", "96.466", "2.77031802120141", "283", "10", "100", "0", "1", "283", "2345841", "2346123", "Luteolibacter sp. SL250 chromosome", "blastn", "784", "468", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Verrucomicrobiia", "Verrucomicrobiales", "Verrucomicrobiaceae", "Luteolibacter", "Luteolibacter sp. SL250"], [25078133, "PRJNA874604_P_NODE_53120_length_278_cov_1.502439_g52768_i0", "PRJNA874604", "53120", "278", "1.502439", "4.17678042", "Opitutaceae bacterium TAV5", "794903", "Bacteria", "Bacteria", "411", "3.659999999999999e-110", "", "NTclustered", "gi|573471959|gb|CP007053.1|", "794903", "g52768", "i0", "93.478", "98.5575539568345", "276", "18", "99", "0", "1", "276", "2676580", "2676855", "Opitutaceae bacterium TAV5, complete genome", "blastn", "27399", "411", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Opitutia", "Opitutales", "Opitutaceae", null, "Opitutaceae bacterium TAV5"], [26738263, "PRJNA874604_P_NODE_76841_length_249_cov_0.863636_g76489_i0", "PRJNA874604", "76841", "249", "0.863636", "2.15045364", "Akkermansia sp.", "1872421", "Bacteria", "Bacteria", "138", "1.88e-37", "", "NR", "WP_417005459.1", "1872421", "g76489", "i0", "86.6", "1.96385542168675", "82", "11", "98.8", "0", "3", "248", "132", "213", "WP_417005459.1 DUF3644 domain-containing protein [Akkermansia sp.]", "diamond", "489", "138", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Verrucomicrobiia", "Verrucomicrobiales", "Akkermansiaceae", "Akkermansia", "Akkermansia sp."], [26770401, "PRJNA874604_P_NODE_95061_length_242_cov_1.644970_g94709_i0", "PRJNA874604", "95061", "242", "1.64497", "3.9808274", "Chthoniobacteraceae bacterium", "2811408", "Bacteria", "Bacteria", "44.7", "0.00242", "", "NR", "MEO6754186.1", "2811408", "g94709", "i0", "37.5", "0.694214876033058", "56", "35", "69.4", "0", "25", "192", "16", "71", "MEO6754186.1 hypothetical protein [Chthoniobacteraceae bacterium]", "diamond", "168", "44.7", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Spartobacteria", "Chthoniobacterales", "Chthoniobacteraceae", null, "Chthoniobacteraceae bacterium"], [27813603, "PRJNA874604_P_NODE_97064_length_242_cov_0.911243_g96712_i0", "PRJNA874604", "97064", "242", "0.911243", "2.20520806", "Opitutaceae bacterium", "2006848", "Bacteria", "Bacteria", "64.3", "9.33e-10", "", "NR", "MBK8477075.1", "2006848", "g96712", "i0", "44", "2.05785123966942", "84", "43", "99.2", "2", "240", "1", "384", "467", "MBK8477075.1 SMP-30/gluconolactonase/LRE family protein [Opitutaceae bacterium]", "diamond", "498", "64.3", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Opitutia", "Opitutales", "Opitutaceae", null, "Opitutaceae bacterium"], [28318479, "PRJNA874604_P_NODE_60906_length_264_cov_1.612565_g60554_i0", "PRJNA874604", "60906", "264", "1.612565", "4.2571716", "Verrucomicrobiia bacterium", "2499141", "Bacteria", "Bacteria", "43.1", "0.0352", "", "NR", "MBL6763801.1", "2499141", "g60554", "i0", "31.8", "0.75", "66", "45", "75", "0", "249", "52", "22", "87", "MBL6763801.1 glycoside hydrolase family 130 protein [Verrucomicrobiia bacterium]", "diamond", "198", "43.1", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Verrucomicrobiia", null, null, null, "Verrucomicrobiia bacterium"], [28642473, "PRJNA874604_P_NODE_49147_length_286_cov_1.098592_g48795_i0", "PRJNA874604", "49147", "286", "1.098592", "3.14197312", "Bacteria", "2", "Bacteria", "Bacteria", "47.8", "0.00105", "", "NR", "MEZ5434667.1", "2026801", "g48795", "i0", "30.5", "1.99300699300699", "95", "62", "99.7", "1", "286", "2", "151", "241", "MEZ5434667.1 tetratricopeptide repeat protein [Verrucomicrobiales bacterium]", "diamond", "570", "47.8", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Verrucomicrobiia", "Verrucomicrobiales", null, null, "Verrucomicrobiales bacterium"], [29210833, "PRJNA874604_P_NODE_86109_length_245_cov_1.622093_g85757_i0", "PRJNA874604", "86109", "245", "1.622093", "3.97412785", "Luteolibacter", "518753", "Bacteria", "Bacteria", "108", "4.14e-26", "", "NR", "MEK6230939.1", "1962973", "g85757", "i0", "57.9", "6.34285714285714", "76", "32", "93.1", "0", "17", "244", "1", "76", "MEK6230939.1 NAD(P)-dependent alcohol dehydrogenase [Luteolibacter sp.]", "diamond", "1554", "108", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Verrucomicrobiia", "Verrucomicrobiales", "Verrucomicrobiaceae", "Luteolibacter", "Luteolibacter sp."], [29518253, "PRJNA874604_P_NODE_59770_length_266_cov_1.595855_g59418_i0", "PRJNA874604", "59770", "266", "1.595855", "4.2449743", "Verrucomicrobiota bacterium", "2026799", "Bacteria", "Bacteria", "76.6", "5.05e-14", "", "NR", "MBM3831845.1", "2026799", "g59418", "i0", "47.7", "2.0187969924812", "88", "38", "99.2", "1", "264", "1", "151", "230", "MBM3831845.1 hypothetical protein [Verrucomicrobiota bacterium]", "diamond", "537", "76.6", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", null, null, null, null, "Verrucomicrobiota bacterium"], [29549730, "PRJNA874604_P_NODE_85070_length_246_cov_0.890173_g84718_i0", "PRJNA874604", "85070", "246", "0.890173", "2.18982558", "Verrucomicrobiia bacterium", "2499141", "Bacteria", "Bacteria", "102", "1.57e-25", "", "NR", "HEV2390943.1", "2499141", "g84718", "i0", "59.8", "2", "82", "33", "100", "0", "246", "1", "33", "114", "HEV2390943.1 response regulator [Verrucomicrobiia bacterium]", "diamond", "492", "102", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Verrucomicrobiia", null, null, null, "Verrucomicrobiia bacterium"], [29549733, "PRJNA874604_P_NODE_88270_length_245_cov_0.895349_g87918_i0", "PRJNA874604", "88270", "245", "0.895349", "2.19360505", "Luteolibacter pohnpeiensis", "454153", "Bacteria", "Bacteria", "48.5", "2.77e-4", "", "NR", "WP_200273321.1", "454153", "g87918", "i0", "33", "1.18775510204082", "97", "46", "95.5", "3", "9", "242", "136", "232", "WP_200273321.1 glycosyltransferase family 32 protein [Luteolibacter pohnpeiensis]", "diamond", "291", "48.5", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Verrucomicrobiia", "Verrucomicrobiales", "Verrucomicrobiaceae", "Luteolibacter", "Luteolibacter pohnpeiensis"], [30086732, "PRJNA874604_P_NODE_44432_length_296_cov_2.582960_g44080_i0", "PRJNA874604", "44432", "296", "2.58296", "7.6455616", "Opitutales bacterium", "2026772", "Bacteria", "Bacteria", "50.1", "1.83e-4", "", "NR", "MCC5808074.1", "2026772", "g44080", "i0", "54.4", "0.577702702702703", "57", "26", "57.8", "0", "124", "294", "343", "399", "MCC5808074.1 hypothetical protein [Opitutales bacterium]", "diamond", "171", "50.1", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Opitutia", "Opitutales", null, null, "Opitutales bacterium"], [30687016, "PRJNA874604_P_NODE_64633_length_258_cov_1.194595_g64281_i0", "PRJNA874604", "64633", "258", "1.194595", "3.0820551", "Verrucomicrobiia bacterium", "2499141", "Bacteria", "Bacteria", "95.1", "1.56e-20", "", "NR", "HXP81690.1", "2499141", "g64281", "i0", "56.6", "0.883720930232558", "76", "32", "87.2", "1", "226", "2", "199", "274", "HXP81690.1 kelch repeat-containing protein [Verrucomicrobiia bacterium]", "diamond", "228", "95.1", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Verrucomicrobiia", null, null, null, "Verrucomicrobiia bacterium"], [30758437, "PRJNA874604_P_NODE_70374_length_251_cov_0.865169_g70022_i0", "PRJNA874604", "70374", "251", "0.865169", "2.17157419", "Pseudomonadati", "3379134", "Bacteria", "Bacteria", "76.6", "4.78e-14", "", "NR", "MES1166212.1", "2026799", "g70022", "i0", "49.5", "2.17529880478088", "91", "38", "99.2", "3", "249", "1", "506", "596", "MES1166212.1 hypothetical protein [Verrucomicrobiota bacterium]", "diamond", "546", "76.6", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", null, null, null, null, "Verrucomicrobiota bacterium"], [31264009, "PRJNA874604_P_NODE_83975_length_246_cov_0.890173_g83623_i0", "PRJNA874604", "83975", "246", "0.890173", "2.18982558", "PVC group", "1783257", "Bacteria", "Bacteria", "95.5", "4.2e-21", "", "NR", "HKB90947.1", "2006848", "g83623", "i0", "60.5", "2.78048780487805", "76", "30", "92.7", "0", "229", "2", "233", "308", "HKB90947.1 TIGR03364 family FAD-dependent oxidoreductase [Opitutaceae bacterium]", "diamond", "684", "95.5", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Opitutia", "Opitutales", "Opitutaceae", null, "Opitutaceae bacterium"], [31422103, "PRJNA874604_P_NODE_97116_length_242_cov_0.911243_g96764_i0", "PRJNA874604", "97116", "242", "0.911243", "2.20520806", "Bacteria", "2", "Bacteria", "Bacteria", "79.7", "2.36e-15", "", "NR", "PAW70949.1", "1982322", "g96764", "i0", "87", "1.1404958677686", "46", "6", "57", "0", "241", "104", "322", "367", "PAW70949.1 MAG: hypothetical protein B9S35_14270 [Opitutia bacterium Tous-C5TDCM]", "diamond", "276", "79.7", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Opitutia", null, null, null, "Opitutia bacterium Tous-C5TDCM"], [31730239, "PRJNA874604_P_NODE_53837_length_277_cov_1.377451_g53485_i0", "PRJNA874604", "53837", "277", "1.377451", "3.81553927", "Verrucomicrobiota bacterium", "2026799", "Bacteria", "Bacteria", "43.1", "0.0412", "", "NR", "MBV9490687.1", "2026799", "g53485", "i0", "33.3", "0.617328519855596", "57", "36", "61.7", "1", "40", "210", "291", "345", "MBV9490687.1 ABC transporter ATP-binding protein/permease [Verrucomicrobiota bacterium]", "diamond", "171", "43.1", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", null, null, null, null, "Verrucomicrobiota bacterium"], [32553271, "PRJNA874604_P_NODE_88479_length_245_cov_0.895349_g88127_i0", "PRJNA874604", "88479", "245", "0.895349", "2.19360505", "Chthoniobacter flavus", "191863", "Bacteria", "Bacteria", "44.3", "0.0113", "", "NR", "WP_131989126.1", "191863", "g88127", "i0", "45.6", "1.39591836734694", "57", "26", "69.8", "2", "66", "236", "1428", "1479", "WP_131989126.1 autotransporter domain-containing protein [Chthoniobacter flavus]", "diamond", "342", "44.3", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Spartobacteria", "Chthoniobacterales", "Chthoniobacteraceae", "Chthoniobacter", "Chthoniobacter flavus"]], "truncated": false, "filtered_table_rows_count": 24, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"bioproject\" = :p0 and \"tax_phylum\" = :p1 order by rowid limit 101", "params": {"p0": "PRJNA874604", "p1": "Verrucomicrobiota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA874604&tax_phylum=Verrucomicrobiota", "results": [{"value": "PRJNA874604", "label": "PRJNA874604", "count": 24, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_phylum=Verrucomicrobiota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA874604&tax_phylum=Verrucomicrobiota", "results": [{"value": "diamond", "label": "diamond", "count": 18, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA874604&tax_phylum=Verrucomicrobiota&analysis=diamond", "selected": false}, {"value": "blastn", "label": "blastn", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA874604&tax_phylum=Verrucomicrobiota&analysis=blastn", "selected": false}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA874604&tax_phylum=Verrucomicrobiota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 24, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA874604&tax_phylum=Verrucomicrobiota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA874604&tax_phylum=Verrucomicrobiota", "results": [{"value": "PVC group", "label": "PVC group", "count": 24, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA874604&tax_phylum=Verrucomicrobiota&tax_clade=PVC+group", "selected": false}], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA874604&tax_phylum=Verrucomicrobiota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 24, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA874604&tax_phylum=Verrucomicrobiota&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA874604&tax_phylum=Verrucomicrobiota", "results": [{"value": "Verrucomicrobiota", "label": "Verrucomicrobiota", "count": 24, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA874604", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 346.86567700555315}