{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where bioproject = \"PRJNA849822\", tax_phylum = \"Pisuviricota\" and tax_superkingdom = \"Viruses\"", "rows": [[3389227, "PRJNA849822_P_NODE_14903_length_377_cov_1.282895_g14729_i0", "PRJNA849822", "14903", "377", "1.282895", "4.83651415", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "697", "0", "", "NTclustered", "gi|2560551729|gb|OR418642.1|", "2697049", "g14729", "i0", "100", "100", "377", "0", "100", "0", "1", "377", "6182", "6558", "Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CA-LACPHL-AY00896/2022 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds", "blastn", "37700", "697", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [4666936, "PRJNA849822_P_NODE_10604_length_457_cov_1.510417_g10431_i0", "PRJNA849822", "10604", "457", "1.510417", "6.90260569", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "845", "0", "", "NTclustered", "gi|2499447400|emb|OX492971.1|", "2697049", "g10431", "i0", "100", "100", "457", "0", "100", "0", "1", "457", "18123", "18579", "Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite", "blastn", "45700", "845", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [7216723, "PRJNA849822_P_NODE_24826_length_291_cov_1.362385_g24652_i0", "PRJNA849822", "24826", "291", "1.362385", "3.96454035", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "538", "1.6999999999999994e-148", "", "NTclustered", "gi|2105696498|gb|OK358740.1|", "2697049", "g24652", "i0", "100", "100", "291", "0", "100", "0", "1", "291", "9591", "9881", "Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/TX-DSHS-9158/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), and ORF6 protein (ORF6) genes, complete cds; ORF7a protein (ORF7a) and ORF7b (ORF7b) genes, partial cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes, complete cds", "blastn", "29100", "538", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [7216770, "PRJNA849822_P_NODE_31446_length_261_cov_1.015957_g31272_i0", "PRJNA849822", "31446", "261", "1.015957", "2.65164777", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "483", "7.12e-132", "", "NTclustered", "gi|2316342856|gb|OP624554.1|", "2697049", "g31272", "i0", "100", "100", "261", "0", "100", "0", "1", "261", "24393", "24133", "Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/OH-CDC-QDX41755282/2022, complete genome", "blastn", "26100", "483", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [9766700, "PRJNA849822_P_NODE_29428_length_269_cov_1.591837_g29254_i0", "PRJNA849822", "29428", "269", "1.591837", "4.28204153", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "497", "2.63e-136", "", "NTclustered", "gi|2316342856|gb|OP624554.1|", "2697049", "g29254", "i0", "100", "100", "269", "0", "100", "0", "1", "269", "13003", "12735", "Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/OH-CDC-QDX41755282/2022, complete genome", "blastn", "26900", "497", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [11042194, "PRJNA849822_P_NODE_17869_length_343_cov_0.811111_g17695_i0", "PRJNA849822", "17869", "343", "0.811111", "2.78211073", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "634", "2.5299999999999996e-177", "", "NTclustered", "gi|2316342856|gb|OP624554.1|", "2697049", "g17695", "i0", "100", "100", "343", "0", "100", "0", "1", "343", "22201", "21859", "Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/OH-CDC-QDX41755282/2022, complete genome", "blastn", "34300", "634", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [14866617, "PRJNA849822_P_NODE_28272_length_274_cov_3.104478_g28098_i0", "PRJNA849822", "28272", "274", "3.104478", "8.50626972", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "507", "4.47e-139", "", "NTclustered", "gi|2028980905|gb|MZ002360.1|", "2697049", "g28098", "i0", "100", "100", "274", "0", "100", "0", "1", "274", "3609", "3336", "Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome", "blastn", "27400", "507", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [18689962, "PRJNA849822_P_NODE_30775_length_263_cov_4.800000_g30601_i0", "PRJNA849822", "30775", "263", "4.8", "12.624", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "486", "5.5499999999999986e-133", "", "NTclustered", "gi|2499447400|emb|OX492971.1|", "2697049", "g30601", "i0", "100", "100", "263", "0", "100", "0", "1", "263", "7405", "7143", "Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite", "blastn", "26300", "486", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [19085066, "PRJNA849822_P_NODE_41375_length_244_cov_0.912281_g41201_i0", "PRJNA849822", "41375", "244", "0.912281", "2.22596564", "Potyvirus", "12195", "Viruses", "Viruses", "401", "1.8999999999999998e-107", "", "NTclustered", "gi|1735126414|gb|MK292120.1|", "12198", "g41201", "i0", "96.311", "22.4754098360656", "244", "9", "100", "0", "1", "244", "644", "887", "Clover yellow vein virus isolate IA-2016, complete genome", "blastn", "5484", "401", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Stelpaviricetes", "Patatavirales", "Potyviridae", "Potyvirus", "Potyvirus trifolii"], [19964979, "PRJNA849822_P_NODE_17456_length_347_cov_1.492701_g17282_i0", "PRJNA849822", "17456", "347", "1.492701", "5.17967247", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "641", "1.5299999999999996e-179", "", "NTclustered", "gi|2316342856|gb|OP624554.1|", "2697049", "g17282", "i0", "100", "100", "347", "0", "100", "0", "1", "347", "23899", "23553", "Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/OH-CDC-QDX41755282/2022, complete genome", "blastn", "34700", "641", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [19965086, "PRJNA849822_P_NODE_30676_length_264_cov_1.345550_g30502_i0", "PRJNA849822", "30676", "264", "1.34555", "3.552252", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "483", "7.219999999999998e-132", "", "NTclustered", "gi|2316342856|gb|OP624554.1|", "2697049", "g30502", "i0", "99.621", "100", "264", "1", "100", "0", "1", "264", "20196", "19933", "Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/OH-CDC-QDX41755282/2022, complete genome", "blastn", "26400", "483", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [19965089, "PRJNA849822_P_NODE_31056_length_262_cov_1.603175_g30882_i0", "PRJNA849822", "31056", "262", "1.603175", "4.2003185", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "484", "1.99e-132", "", "NTclustered", "gi|2499447400|emb|OX492971.1|", "2697049", "g30882", "i0", "100", "100", "262", "0", "100", "0", "1", "262", "25691", "25952", "Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite", "blastn", "26200", "484", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [21240696, "PRJNA849822_P_NODE_31177_length_262_cov_1.121693_g31003_i0", "PRJNA849822", "31177", "262", "1.121693", "2.93883566", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "479", "9.249999999999999e-131", "", "NTclustered", "gi|2529113455|emb|OY166144.1|", "2697049", "g31003", "i0", "99.618", "99.9923664122137", "262", "1", "100", "0", "1", "262", "17793", "18054", "Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1", "blastn", "26198", "479", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [23790719, "PRJNA849822_P_NODE_10219_length_467_cov_2.274112_g10046_i0", "PRJNA849822", "10219", "467", "2.274112", "10.62010304", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "863", "0", "", "NTclustered", "gi|2316342856|gb|OP624554.1|", "2697049", "g10046", "i0", "100", "100", "467", "0", "100", "0", "1", "467", "23448", "22982", "Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/OH-CDC-QDX41755282/2022, complete genome", "blastn", "46700", "863", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [23790827, "PRJNA849822_P_NODE_22379_length_306_cov_2.004292_g22205_i0", "PRJNA849822", "22379", "306", "2.004292", "6.13313352", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "566", "8.239999999999998e-157", "", "NTclustered", "gi|2028980905|gb|MZ002360.1|", "2697049", "g22205", "i0", "100", "100", "306", "0", "100", "0", "1", "306", "8847", "8542", "Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome", "blastn", "30600", "566", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [23790889, "PRJNA849822_P_NODE_29899_length_267_cov_1.608247_g29725_i0", "PRJNA849822", "29899", "267", "1.608247", "4.29401949", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "494", "3.38e-135", "", "NTclustered", "gi|2499447400|emb|OX492971.1|", "2697049", "g29725", "i0", "100", "100", "267", "0", "100", "0", "1", "267", "1897", "2163", "Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite", "blastn", "26700", "494", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"]], "truncated": false, "filtered_table_rows_count": 16, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"bioproject\" = :p0 and \"tax_phylum\" = :p1 and \"tax_superkingdom\" = :p2 order by rowid limit 101", "params": {"p0": "PRJNA849822", "p1": "Pisuviricota", "p2": "Viruses"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA849822&tax_phylum=Pisuviricota&tax_superkingdom=Viruses", "results": [{"value": "PRJNA849822", "label": "PRJNA849822", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_phylum=Pisuviricota&tax_superkingdom=Viruses", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA849822&tax_phylum=Pisuviricota&tax_superkingdom=Viruses", "results": [{"value": "blastn", "label": "blastn", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA849822&tax_phylum=Pisuviricota&tax_superkingdom=Viruses&analysis=blastn", "selected": false}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA849822&tax_phylum=Pisuviricota&tax_superkingdom=Viruses", "results": [{"value": "Viruses", "label": "Viruses", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA849822&tax_phylum=Pisuviricota", "selected": true}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA849822&tax_phylum=Pisuviricota&tax_superkingdom=Viruses", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA849822&tax_phylum=Pisuviricota&tax_superkingdom=Viruses", "results": [{"value": "Orthornavirae", "label": "Orthornavirae", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA849822&tax_phylum=Pisuviricota&tax_superkingdom=Viruses&tax_kingdom=Orthornavirae", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA849822&tax_phylum=Pisuviricota&tax_superkingdom=Viruses", "results": [{"value": "Pisuviricota", "label": "Pisuviricota", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA849822&tax_superkingdom=Viruses", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 309.78344500181265}