{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where bioproject = \"PRJNA849822\" and tax_phylum = \"Campylobacterota\"", "rows": [[9766776, "PRJNA849822_P_NODE_39888_length_246_cov_0.901734_g39714_i0", "PRJNA849822", "39888", "246", "0.901734", "2.21826564", "Wolinella succinogenes", "844", "Bacteria", "Bacteria", "449", "6.74e-122", "", "NTclustered", "gi|34482172|emb|BX571657.1|", "844", "g39714", "i0", "99.593", "2", "246", "1", "100", "0", "1", "246", "49659", "49904", "Wolinella succinogenes, complete genome; segment 1/7", "blastn", "492", "449", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Wolinella", "Wolinella succinogenes"], [12317803, "PRJNA849822_P_NODE_29870_length_267_cov_1.742268_g29696_i0", "PRJNA849822", "29870", "267", "1.742268", "4.6518555599999996", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "54.7", "0.007", "", "NTclustered", "gi|2642434087|gb|CP078476.1|", "210", "g29696", "i0", "94.286", "0.741573033707865", "35", "2", "13", "0", "108", "142", "1074690", "1074724", "Helicobacter pylori strain HpGP-MMR-011 chromosome, complete genome", "blastn", "198", "54.7", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [16141346, "PRJNA849822_P_NODE_26653_length_282_cov_1.330144_g26479_i0", "PRJNA849822", "26653", "282", "1.330144", "3.75100608", "Wolinella succinogenes", "844", "Bacteria", "Bacteria", "516", "7.67e-142", "", "NTclustered", "gi|34483865|emb|BX571662.1|", "844", "g26479", "i0", "99.645", "2", "282", "1", "100", "0", "1", "282", "309828", "310109", "Wolinella succinogenes, complete genome; segment 6/7", "blastn", "564", "516", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Wolinella", "Wolinella succinogenes"], [22515457, "PRJNA849822_P_NODE_39018_length_247_cov_0.896552_g38844_i0", "PRJNA849822", "39018", "247", "0.896552", "2.21448344", "Wolinella succinogenes", "844", "Bacteria", "Bacteria", "451", "1.88e-122", "", "NTclustered", "gi|296081|emb|X65189.1|", "844", "g38844", "i0", "99.595", "3.27125506072874", "247", "1", "100", "0", "1", "247", "1628", "1382", "W.succinogenes genes hydA, hydB, hydC for hydrogenase", "blastn", "808", "451", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Wolinella", "Wolinella succinogenes"], [27055001, "PRJNA849822_P_NODE_15262_length_372_cov_1.625418_g15088_i0", "PRJNA849822", "15262", "372", "1.625418", "6.04655496", "Campylobacterota bacterium", "2026809", "Bacteria", "Bacteria", "101", "9.289999999999999e-24", "", "NR", "MEA3522995.1", "2026809", "g15088", "i0", "48", "1.98387096774194", "123", "59", "97.6", "5", "3", "365", "91", "210", "MEA3522995.1 hemolysin III family protein [Campylobacterota bacterium]", "diamond", "738", "101", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", null, null, null, null, "Campylobacterota bacterium"], [27876131, "PRJNA849822_P_NODE_17345_length_348_cov_1.665455_g17171_i0", "PRJNA849822", "17345", "348", "1.665455", "5.7957834", "Campylobacterota bacterium", "2026809", "Bacteria", "Bacteria", "94.4", "1.71e-20", "", "NR", "MCL4431196.1", "2026809", "g17171", "i0", "57.6", "0.732758620689655", "85", "29", "67.2", "2", "114", "347", "209", "293", "MCL4431196.1 hypothetical protein [Campylobacterota bacterium]", "diamond", "255", "94.4", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", null, null, null, null, "Campylobacterota bacterium"], [27970892, "PRJNA849822_P_NODE_38405_length_247_cov_1.362069_g38231_i0", "PRJNA849822", "38405", "247", "1.362069", "3.36431043", "Desulfurella amilsii", "1562698", "Bacteria", "Bacteria", "112", "9.4e-27", "", "NR", "WP_086034043.1", "1562698", "g38231", "i0", "61", "14.9392712550607", "82", "31", "99.6", "1", "246", "1", "458", "538", "WP_086034043.1 AMP-binding protein [Desulfurella amilsii]", "diamond", "3690", "112", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Desulfurellia", "Desulfurellales", "Desulfurellaceae", "Desulfurella", "Desulfurella amilsii"], [28160565, "PRJNA849822_P_NODE_33905_length_253_cov_0.866667_g33731_i0", "PRJNA849822", "33905", "253", "0.866667", "2.19266751", "Poseidonibacter antarcticus", "2478538", "Bacteria", "Bacteria", "69.7", "3.57e-12", "", "NR", "WP_162984614.1", "2478538", "g33731", "i0", "55.1", "0.818181818181818", "69", "31", "81.8", "0", "40", "246", "61", "129", "WP_162984614.1 GAG-pre-integrase domain-containing protein, partial [Poseidonibacter antarcticus]", "diamond", "207", "69.7", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Arcobacteraceae", "Poseidonibacter", "Poseidonibacter antarcticus"], [28476158, "PRJNA849822_P_NODE_41746_length_243_cov_2.323529_g41572_i0", "PRJNA849822", "41746", "243", "2.323529", "5.64617547", "Poseidonibacter antarcticus", "2478538", "Bacteria", "Bacteria", "111", "2.7000000000000003e-28", "", "NR", "WP_162984614.1", "2478538", "g41572", "i0", "63", "1", "81", "29", "98.8", "1", "2", "241", "100", "180", "WP_162984614.1 GAG-pre-integrase domain-containing protein, partial [Poseidonibacter antarcticus]", "diamond", "243", "111", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Arcobacteraceae", "Poseidonibacter", "Poseidonibacter antarcticus"], [28705497, "PRJNA849822_P_NODE_12187_length_422_cov_1.561605_g12013_i0", "PRJNA849822", "12187", "422", "1.561605", "6.5899731", "Campylobacterales", "213849", "Bacteria", "Bacteria", "114", "7.75e-28", "", "NR", "WP_317937250.1", "201", "g12013", "i0", "46", "12.063981042654", "126", "60", "89.6", "2", "382", "5", "157", "274", "WP_317937250.1 phosphotransferase [Campylobacter lari]", "diamond", "5091", "115", "0.991304347826087", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter lari"], [28728755, "PRJNA849822_P_NODE_37347_length_249_cov_0.886364_g37173_i0", "PRJNA849822", "37347", "249", "0.886364", "2.20704636", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "101", "1.01e-25", "", "NR", "WP_304476977.1", "210", "g37173", "i0", "96.2", "0.63855421686747", "53", "2", "63.9", "0", "91", "249", "48", "100", "WP_304476977.1 hypothetical protein, partial [Helicobacter pylori]", "diamond", "159", "101", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [29021494, "PRJNA849822_P_NODE_39788_length_246_cov_0.901734_g39614_i0", "PRJNA849822", "39788", "246", "0.901734", "2.21826564", "Sulfurospirillum", "57665", "Bacteria", "Bacteria", "134", "2.2899999999999998e-38", "", "NR", "MBE0497547.1", "2268180", "g39614", "i0", "79.3", "2", "82", "17", "100", "0", "1", "246", "54", "135", "MBE0497547.1 thiamine-phosphate kinase [Campylobacterales bacterium]", "diamond", "492", "134", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", null, null, "Campylobacterales bacterium"], [29991788, "PRJNA849822_P_NODE_18071_length_341_cov_0.847015_g17897_i0", "PRJNA849822", "18071", "341", "0.847015", "2.88832115", "Poseidonibacter antarcticus", "2478538", "Bacteria", "Bacteria", "155", "3.21e-45", "", "NR", "WP_162984614.1", "2478538", "g17897", "i0", "67.3", "0.967741935483871", "110", "35", "95.9", "1", "1", "327", "114", "223", "WP_162984614.1 GAG-pre-integrase domain-containing protein, partial [Poseidonibacter antarcticus]", "diamond", "330", "155", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Arcobacteraceae", "Poseidonibacter", "Poseidonibacter antarcticus"], [30402939, "PRJNA849822_P_NODE_27773_length_277_cov_1.147059_g27599_i0", "PRJNA849822", "27773", "277", "1.147059", "3.17735343", "Sulfuricurvum sp.", "2025608", "Bacteria", "Bacteria", "42.4", "0.0458", "", "NR", "WP_295063667.1", "2025608", "g27599", "i0", "29.5", "0.953068592057762", "88", "60", "93.1", "1", "275", "18", "74", "161", "WP_295063667.1 histidine phosphatase family protein [Sulfuricurvum sp.]", "diamond", "264", "42.4", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Sulfurimonadaceae", "Sulfuricurvum", "Sulfuricurvum sp."], [31002876, "PRJNA849822_P_NODE_27134_length_280_cov_1.130435_g26960_i0", "PRJNA849822", "27134", "280", "1.130435", "3.165218", "Campylobacterota bacterium", "2026809", "Bacteria", "Bacteria", "43.1", "0.0381", "", "NR", "MCL4431196.1", "2026809", "g26960", "i0", "78.3", "0.246428571428571", "23", "5", "24.6", "0", "3", "71", "282", "304", "MCL4431196.1 hypothetical protein [Campylobacterota bacterium]", "diamond", "69", "43.1", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", null, null, null, null, "Campylobacterota bacterium"], [32173218, "PRJNA849822_P_NODE_33478_length_253_cov_0.866667_g33304_i0", "PRJNA849822", "33478", "253", "0.866667", "2.19266751", "Sulfurospirillum tamanense", "2813362", "Bacteria", "Bacteria", "156", "1.25e-44", "", "NR", "WP_205458288.1", "2813362", "g33304", "i0", "90.4", "0.984189723320158", "83", "8", "98.4", "0", "251", "3", "211", "293", "WP_205458288.1 dehypoxanthine futalosine cyclase [Sulfurospirillum tamanense]", "diamond", "249", "156", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Sulfurospirillaceae", "Sulfurospirillum", "Sulfurospirillum tamanense"]], "truncated": false, "filtered_table_rows_count": 16, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"bioproject\" = :p0 and \"tax_phylum\" = :p1 order by rowid limit 101", "params": {"p0": "PRJNA849822", "p1": "Campylobacterota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA849822&tax_phylum=Campylobacterota", "results": [{"value": "PRJNA849822", "label": "PRJNA849822", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA849822&tax_phylum=Campylobacterota", "results": [{"value": "diamond", "label": "diamond", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA849822&tax_phylum=Campylobacterota&analysis=diamond", "selected": false}, {"value": "blastn", "label": "blastn", "count": 4, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA849822&tax_phylum=Campylobacterota&analysis=blastn", "selected": false}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA849822&tax_phylum=Campylobacterota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA849822&tax_phylum=Campylobacterota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA849822&tax_phylum=Campylobacterota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA849822&tax_phylum=Campylobacterota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA849822&tax_phylum=Campylobacterota&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA849822&tax_phylum=Campylobacterota", "results": [{"value": "Campylobacterota", "label": "Campylobacterota", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA849822", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 301.5453389962204}