{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where bioproject = \"PRJNA835051\" and tax_phylum = \"Spirochaetota\"", "rows": [[3376736, "PRJNA835051_S_NODE_33843_length_242_cov_2.170854_g33547_i0", "PRJNA835051", "33843", "242", "2.170854", "5.25346668", "Treponema sp.", "166", "Bacteria", "Bacteria", "83.6", "5.43e-18", "", "NR", "MBR0545750.1", "166", "g33547", "i0", "97.6", "0.520661157024793", "42", "1", "52.1", "0", "242", "117", "131", "172", "MBR0545750.1 hypothetical protein [Treponema sp.]", "diamond", "126", "83.6", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema sp."], [17404991, "PRJNA835051_S_NODE_97774_length_171_cov_1.125000_g97478_i0", "PRJNA835051", "97774", "171", "1.125", "1.92375", "Thiospirochaeta perfilievii", "252967", "Bacteria", "Bacteria", "54.7", "0.004", "", "NTclustered", "gi|1735508175|gb|CP035807.1|", "252967", "g97478", "i0", "100", "0.169590643274854", "29", "0", "17", "0", "141", "169", "155956", "155984", "Thiospirochaeta perfilievii strain P chromosome, complete genome", "blastn", "29", "54.7", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Spirochaetaceae", "Thiospirochaeta", "Thiospirochaeta perfilievii"], [26865055, "PRJNA835051_S_NODE_104581_length_166_cov_1.626016_g104285_i0", "PRJNA835051", "104581", "166", "1.626016", "2.69918656", "Treponema sp.", "166", "Bacteria", "Bacteria", "114", "1.12e-27", "", "NR", "MBQ5906876.1", "166", "g104285", "i0", "100", "0.993975903614458", "55", "0", "99.4", "0", "166", "2", "1259", "1313", "MBQ5906876.1 phosphoribosylformylglycinamidine synthase [Treponema sp.]", "diamond", "165", "114", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema sp."], [27497111, "PRJNA835051_S_NODE_55143_length_210_cov_1.694611_g54847_i0", "PRJNA835051", "55143", "210", "1.694611", "3.5586831", "Treponema sp.", "166", "Bacteria", "Bacteria", "136", "2.93e-38", "", "NR", "MBQ1175205.1", "166", "g54847", "i0", "98.6", "1", "70", "1", "100", "0", "1", "210", "87", "156", "MBQ1175205.1 CPBP family intramembrane metalloprotease [Treponema sp.]", "diamond", "210", "136", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema sp."], [28002372, "PRJNA835051_S_NODE_125465_length_153_cov_2.181818_g125169_i0", "PRJNA835051", "125465", "153", "2.181818", "3.33818154", "Borreliella garinii", "29519", "Bacteria", "Bacteria", "40", "0.0147", "", "NR", "WP_210380402.1", "29519", "g125169", "i0", "69", "0.568627450980392", "29", "9", "56.9", "0", "66", "152", "2", "30", "WP_210380402.1 hypothetical protein, partial [Borreliella garinii]", "diamond", "87", "40", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Borreliaceae", "Borreliella", "Borreliella garinii"], [28128641, "PRJNA835051_S_NODE_57145_length_207_cov_3.884146_g56849_i0", "PRJNA835051", "57145", "207", "3.884146", "8.04018222", "Treponema sp.", "166", "Bacteria", "Bacteria", "117", "6.91e-32", "", "NR", "MBQ2234740.1", "166", "g56849", "i0", "91.3", "1", "69", "6", "100", "0", "207", "1", "44", "112", "MBQ2234740.1 hypothetical protein [Treponema sp.]", "diamond", "207", "117", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema sp."], [28231452, "PRJNA835051_S_NODE_15206_length_295_cov_1.698413_g14910_i0", "PRJNA835051", "15206", "295", "1.698413", "5.01031835", "Bacteria", "2", "Bacteria", "Bacteria", "135", "1.21e-37", "", "NR", "MBE6351053.1", "1898206", "g14910", "i0", "71.6", "6.30508474576271", "88", "25", "89.5", "0", "291", "28", "130", "217", "MBE6351053.1 hypothetical protein [Spirochaetaceae bacterium]", "diamond", "1860", "136", "0.992647058823529", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Spirochaetaceae", null, "Spirochaetaceae bacterium"], [28254674, "PRJNA835051_S_NODE_96966_length_171_cov_2.484375_g96670_i0", "PRJNA835051", "96966", "171", "2.484375", "4.24828125", "Treponema sp.", "166", "Bacteria", "Bacteria", "100", "1.47e-23", "", "NR", "MCR5079764.1", "166", "g96670", "i0", "98.2", "0.982456140350877", "56", "1", "98.2", "0", "3", "170", "64", "119", "MCR5079764.1 calcium/sodium antiporter [Treponema sp.]", "diamond", "168", "100", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema sp."], [28381065, "PRJNA835051_S_NODE_75786_length_188_cov_2.406897_g75490_i0", "PRJNA835051", "75786", "188", "2.406897", "4.52496636", "Borreliella garinii", "29519", "Bacteria", "Bacteria", "40.8", "0.0141", "", "NR", "WP_369122472.1", "29519", "g75490", "i0", "47.1", "0.813829787234043", "51", "25", "78.2", "1", "5", "151", "19", "69", "WP_369122472.1 reverse transcriptase domain-containing protein [Borreliella garinii]", "diamond", "153", "40.8", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Borreliaceae", "Borreliella", "Borreliella garinii"], [28412752, "PRJNA835051_S_NODE_81346_length_183_cov_3.285714_g81050_i0", "PRJNA835051", "81346", "183", "3.285714", "6.01285662", "Treponema sp.", "166", "Bacteria", "Bacteria", "123", "2.49e-31", "", "NR", "MEE1166669.1", "166", "g81050", "i0", "100", "0.983606557377049", "60", "0", "98.4", "0", "181", "2", "202", "261", "MEE1166669.1 histidine kinase N-terminal 7TM domain-containing protein [Treponema sp.]", "diamond", "180", "123", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema sp."], [29170575, "PRJNA835051_S_NODE_78849_length_186_cov_0.832168_g78553_i0", "PRJNA835051", "78849", "186", "0.832168", "1.54783248", "Borreliella bavariensis", "664662", "Bacteria", "Bacteria", "43.9", "0.00161", "", "NR", "WP_223147374.1", "664662", "g78553", "i0", "44.7", "0.612903225806452", "38", "21", "61.3", "0", "140", "27", "46", "83", "WP_223147374.1 hypothetical protein, partial [Borreliella bavariensis]", "diamond", "114", "43.9", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Borreliaceae", "Borreliella", "Borreliella bavariensis"], [29517638, "PRJNA835051_S_NODE_124190_length_154_cov_1.621622_g123894_i0", "PRJNA835051", "124190", "154", "1.621622", "2.49729788", "Borreliella garinii", "29519", "Bacteria", "Bacteria", "45.4", "2.87e-4", "", "NR", "WP_234932126.1", "29519", "g123894", "i0", "61.3", "0.603896103896104", "31", "11", "60.4", "1", "134", "42", "40", "69", "WP_234932126.1 hypothetical protein, partial [Borreliella garinii]", "diamond", "93", "45.4", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Borreliaceae", "Borreliella", "Borreliella garinii"], [30789804, "PRJNA835051_S_NODE_119334_length_157_cov_1.254386_g119038_i0", "PRJNA835051", "119334", "157", "1.254386", "1.96938602", "Treponema", "157", "Bacteria", "Bacteria", "72.4", "3.61e-15", "", "NR", "MDD6654372.1", "166", "g119038", "i0", "97.3", "2.12101910828025", "37", "1", "70.7", "0", "155", "45", "40", "76", "MDD6654372.1 winged helix-turn-helix transcriptional regulator [Treponema sp.]", "diamond", "333", "72.4", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema sp."], [31508508, "PRJNA835051_S_NODE_55996_length_209_cov_1.542169_g55700_i0", "PRJNA835051", "55996", "209", "1.542169", "3.22313321", "uncultured Treponema sp.", "162155", "Bacteria", "Bacteria", "74.7", "1.23e-13", "", "NR", "WP_294428913.1", "162155", "g55700", "i0", "53.7", "1.90909090909091", "67", "31", "96.2", "0", "204", "4", "167", "233", "WP_294428913.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [uncultured Treponema sp.]", "diamond", "399", "74.7", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "uncultured Treponema sp."], [32109421, "PRJNA835051_S_NODE_92138_length_175_cov_1.431818_g91842_i0", "PRJNA835051", "92138", "175", "1.431818", "2.5056815", "Treponema sp.", "166", "Bacteria", "Bacteria", "121", "1.0599999999999998e-31", "", "NR", "MBP3561436.1", "166", "g91842", "i0", "98.3", "0.994285714285714", "58", "1", "99.4", "0", "174", "1", "222", "279", "MBP3561436.1 alpha/beta hydrolase [Treponema sp.]", "diamond", "174", "121", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema sp."], [32267755, "PRJNA835051_S_NODE_1398_length_592_cov_14.131148_g1142_i0", "PRJNA835051", "1398", "592", "14.131148", "83.65639616", "Leptospira interrogans", "173", "Bacteria", "Bacteria", "76.6", "9.24e-15", "", "NR", "WP_181743529.1", "173", "g1142", "i0", "63.5", "0.319256756756757", "63", "23", "31.9", "0", "367", "179", "5", "67", "WP_181743529.1 hypothetical protein [Leptospira interrogans]", "diamond", "189", "76.6", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Leptospirales", "Leptospiraceae", "Leptospira", "Leptospira interrogans"]], "truncated": false, "filtered_table_rows_count": 16, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"bioproject\" = :p0 and \"tax_phylum\" = :p1 order by rowid limit 101", "params": {"p0": "PRJNA835051", "p1": "Spirochaetota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA835051&tax_phylum=Spirochaetota", "results": [{"value": "PRJNA835051", "label": "PRJNA835051", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_phylum=Spirochaetota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA835051&tax_phylum=Spirochaetota", "results": [{"value": "diamond", "label": "diamond", "count": 15, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA835051&tax_phylum=Spirochaetota&analysis=diamond", "selected": false}, {"value": "blastn", "label": "blastn", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA835051&tax_phylum=Spirochaetota&analysis=blastn", "selected": false}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA835051&tax_phylum=Spirochaetota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA835051&tax_phylum=Spirochaetota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA835051&tax_phylum=Spirochaetota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA835051&tax_phylum=Spirochaetota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA835051&tax_phylum=Spirochaetota&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA835051&tax_phylum=Spirochaetota", "results": [{"value": "Spirochaetota", "label": "Spirochaetota", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA835051", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 234.0355409978656}