{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where bioproject = \"PRJNA744060\", tax_kingdom = \"Pseudomonadati\" and tax_phylum = \"Campylobacterota\"", "rows": [[3274592, "PRJNA744060_P_NODE_29623_length_300_cov_2.370044_g29294_i0", "PRJNA744060", "29623", "300", "2.370044", "7.110132", "Malaciobacter halophilus", "197482", "Bacteria", "Bacteria", "52.8", "0.028", "", "NTclustered", "gi|1435905597|gb|CP031218.1|", "197482", "g29294", "i0", "100", "0.0933333333333333", "28", "0", "9", "0", "241", "268", "1117331", "1117358", "Malaciobacter halophilus strain CCUG 53805 chromosome, complete genome", "blastn", "28", "52.8", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Arcobacteraceae", "Malaciobacter", "Malaciobacter halophilus"], [10127172, "PRJNA744060_P_NODE_29828_length_299_cov_2.561947_g29499_i0", "PRJNA744060", "29828", "299", "2.561947", "7.66022153", "Campylobacter", "194", "Bacteria", "Bacteria", "189", "2.0299999999999993e-43", "", "NTclustered", "gi|1733427401|gb|CP043426.1|", "488545", "g29499", "i0", "79.771", "80.819397993311", "262", "51", "87", "2", "23", "283", "168309", "168569", "Campylobacter lari subsp. concheus strain LMG 21009 chromosome, complete genome", "blastn", "24165", "189", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter lari"], [13477022, "PRJNA744060_P_NODE_27571_length_310_cov_2.616034_g27242_i0", "PRJNA744060", "27571", "310", "2.616034", "8.1097054", "Candidatus Sulfurimonas marisnigri", "2740405", "Bacteria", "Bacteria", "80.5", "1.33e-10", "", "NTclustered", "gi|1929274859|gb|CP054493.1|", "2740405", "g27242", "i0", "100", "1.8", "43", "0", "18", "0", "147", "189", "1752065", "1752023", "Candidatus Sulfurimonas marisnigri strain SoZ1 chromosome, complete genome", "blastn", "558", "80.5", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Sulfurimonadaceae", "Sulfurimonas", "Candidatus Sulfurimonas marisnigri"], [14752134, "PRJNA744060_P_NODE_27572_length_310_cov_2.603376_g27243_i0", "PRJNA744060", "27572", "310", "2.603376", "8.0704656", "Campylobacteraceae bacterium", "2268179", "Bacteria", "Bacteria", "102", "1.16e-23", "", "NR", "MDR1975662.1", "2268179", "g27243", "i0", "69.4", "3.39677419354839", "72", "22", "69.7", "0", "94", "309", "3", "74", "MDR1975662.1 J domain-containing protein [Campylobacteraceae bacterium]", "diamond", "1053", "102", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", null, "Campylobacteraceae bacterium"], [26957624, "PRJNA744060_P_NODE_51422_length_242_cov_0.923077_g51093_i0", "PRJNA744060", "51422", "242", "0.923077", "2.23384634", "Arcobacter sp. 15-2", "3374109", "Bacteria", "Bacteria", "53.9", "4.19e-6", "", "NR", "WP_412726947.1", "3374109", "g51093", "i0", "48.6", "0.892561983471074", "72", "37", "89.3", "0", "5", "220", "518", "589", "WP_412726947.1 molecular chaperone DnaK [Arcobacter sp. 15-2]", "diamond", "216", "53.9", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Arcobacteraceae", "Arcobacter", "Arcobacter sp. 15-2"], [27052772, "PRJNA744060_P_NODE_20802_length_354_cov_5.377224_g20473_i0", "PRJNA744060", "20802", "354", "5.377224", "19.03537296", "uncultured Campylobacter sp.", "218934", "Bacteria", "Bacteria", "45.1", "0.00762", "", "NR", "WP_299040690.1", "218934", "g20473", "i0", "67.9", "0.457627118644068", "28", "9", "23.7", "0", "2", "85", "1", "28", "WP_299040690.1 BspA family leucine-rich repeat surface protein [uncultured Campylobacter sp.]", "diamond", "162", "45.1", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "uncultured Campylobacter sp."], [27526610, "PRJNA744060_P_NODE_15183_length_412_cov_2.542773_g14854_i0", "PRJNA744060", "15183", "412", "2.542773", "10.47622476", "Campylobacteraceae bacterium", "2268179", "Bacteria", "Bacteria", "102", "4.63e-22", "", "NR", "MBT5324067.1", "2268179", "g14854", "i0", "40.6", "0.932038834951456", "128", "66", "87.4", "2", "2", "361", "911", "1036", "MBT5324067.1 hypothetical protein [Campylobacteraceae bacterium]", "diamond", "384", "102", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", null, "Campylobacteraceae bacterium"], [27726511, "PRJNA744060_P_NODE_55524_length_197_cov_4.733871_g55195_i0", "PRJNA744060", "55524", "197", "4.733871", "9.32572587", "Pseudomonadati", "3379134", "Bacteria", "Bacteria", "43.5", "0.00334", "", "NR", "AOO65847.1", "1193502", "g55195", "i0", "64.3", "0.852791878172589", "28", "10", "42.6", "0", "24", "107", "78", "105", "AOO65847.1 putative lipoprotein [Sulfurospirillum halorespirans DSM 13726]", "diamond", "168", "43.5", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Sulfurospirillaceae", "Sulfurospirillum", "Sulfurospirillum halorespirans"], [28189444, "PRJNA744060_P_NODE_15506_length_408_cov_2.752239_g15177_i0", "PRJNA744060", "15506", "408", "2.752239", "11.22913512", "Campylobacterota bacterium", "2026809", "Bacteria", "Bacteria", "48.5", "0.00212", "", "NR", "MCL4431195.1", "2026809", "g15177", "i0", "37", "1.57352941176471", "92", "54", "66.9", "3", "99", "371", "924", "1012", "MCL4431195.1 reverse transcriptase domain-containing protein [Campylobacterota bacterium]", "diamond", "642", "48.5", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", null, null, null, null, "Campylobacterota bacterium"], [28221156, "PRJNA744060_P_NODE_8066_length_561_cov_3.026639_g7741_i0", "PRJNA744060", "8066", "561", "3.026639", "16.97944479", "Campylobacterota bacterium", "2026809", "Bacteria", "Bacteria", "54.3", "7.79e-5", "", "NR", "MCL4431195.1", "2026809", "g7741", "i0", "33.8", "0.711229946524064", "133", "82", "70.6", "4", "27", "422", "923", "1050", "MCL4431195.1 reverse transcriptase domain-containing protein [Campylobacterota bacterium]", "diamond", "399", "54.3", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", null, null, null, null, "Campylobacterota bacterium"], [28252800, "PRJNA744060_P_NODE_34086_length_282_cov_1.990431_g33757_i0", "PRJNA744060", "34086", "282", "1.990431", "5.61301542", "Campylobacter coli", "195", "Bacteria", "Bacteria", "43.9", "0.0165", "", "NR", "ELT8453928.1", "195", "g33757", "i0", "69.2", "0.276595744680851", "26", "8", "27.7", "0", "3", "80", "5", "30", "ELT8453928.1 DUF285 domain-containing protein [Campylobacter coli]", "diamond", "78", "43.9", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter coli"], [28284228, "PRJNA744060_P_NODE_36926_length_272_cov_3.678392_g36597_i0", "PRJNA744060", "36926", "272", "3.678392", "10.00522624", "Sulfurimonas hongkongensis", "1172190", "Bacteria", "Bacteria", "50.4", "9.08e-5", "", "NR", "WP_021287763.1", "1172190", "g36597", "i0", "30.7", "1.94117647058824", "88", "61", "97.1", "0", "266", "3", "140", "227", "WP_021287763.1 ADP-ribosylglycohydrolase family protein [Sulfurimonas hongkongensis]", "diamond", "528", "50.4", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Sulfurimonadaceae", "Sulfurimonas", "Sulfurimonas hongkongensis"], [28789401, "PRJNA744060_P_NODE_1087_length_1317_cov_8.098071_g948_i0", "PRJNA744060", "1087", "1317", "8.098071", "106.65159507", "Campylobacterota bacterium", "2026809", "Bacteria", "Bacteria", "150", "5.06e-35", "", "NR", "MCL4431195.1", "2026809", "g948", "i0", "30.7", "0.920273348519362", "404", "235", "85.2", "16", "135", "1256", "321", "709", "MCL4431195.1 reverse transcriptase domain-containing protein [Campylobacterota bacterium]", "diamond", "1212", "150", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", null, null, null, null, "Campylobacterota bacterium"], [30842687, "PRJNA744060_P_NODE_37894_length_269_cov_2.627551_g37565_i0", "PRJNA744060", "37894", "269", "2.627551", "7.06811219", "Campylobacter jejuni", "197", "Bacteria", "Bacteria", "42.4", "0.043", "", "NR", "ECP7254359.1", "197", "g37565", "i0", "64.3", "0.602230483271376", "28", "10", "31.2", "0", "4", "87", "1", "28", "ECP7254359.1 BspA family leucine-rich repeat surface protein [Campylobacter jejuni]", "diamond", "162", "42.4", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter jejuni"], [30969114, "PRJNA744060_P_NODE_10954_length_484_cov_2.267640_g10626_i0", "PRJNA744060", "10954", "484", "2.26764", "10.9753776", "Campylobacterota bacterium", "2026809", "Bacteria", "Bacteria", "58.5", "9.87e-7", "", "NR", "MCL4431196.1", "2026809", "g10626", "i0", "36.8", "0.471074380165289", "76", "47", "47.1", "1", "230", "3", "2", "76", "MCL4431196.1 hypothetical protein [Campylobacterota bacterium]", "diamond", "228", "58.5", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", null, null, null, null, "Campylobacterota bacterium"], [30979146, "PRJNA744060_P_NODE_34134_length_282_cov_1.492823_g33805_i0", "PRJNA744060", "34134", "282", "1.492823", "4.20976086", "Campylobacter", "194", "Bacteria", "Bacteria", "43.5", "0.0114", "", "NR", "EHN6916219.1", "197", "g33805", "i0", "70.8", "0.531914893617021", "24", "7", "25.5", "0", "280", "209", "48", "71", "EHN6916219.1 BspA family leucine-rich repeat surface protein [Campylobacter jejuni]", "diamond", "150", "43.5", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter jejuni"], [31136639, "PRJNA744060_P_NODE_39195_length_265_cov_2.239583_g38866_i0", "PRJNA744060", "39195", "265", "2.239583", "5.93489495", "Pseudomonadati", "3379134", "Bacteria", "Bacteria", "55.1", "3.16e-7", "", "NR", "MRI58576.1", "2026809", "g38866", "i0", "62", "1.67547169811321", "50", "18", "56.6", "1", "264", "115", "61", "109", "MRI58576.1 deaminase [Campylobacterota bacterium]", "diamond", "444", "55.1", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", null, null, null, null, "Campylobacterota bacterium"], [31474930, "PRJNA744060_P_NODE_49796_length_244_cov_0.912281_g49467_i0", "PRJNA744060", "49796", "244", "0.912281", "2.22596564", "Thiovulum sp. ES", "1177931", "Bacteria", "Bacteria", "63.5", "9.54e-10", "", "NR", "EJF07359.1", "1177931", "g49467", "i0", "48.4", "5.16393442622951", "64", "32", "77.5", "1", "220", "32", "182", "245", "EJF07359.1 carbonic anhydrase [Thiovulum sp. ES]", "diamond", "1260", "63.5", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Sulfurimonadaceae", "Thiovulum", "Thiovulum sp. ES"], [32519078, "PRJNA744060_P_NODE_44679_length_252_cov_0.871508_g44350_i0", "PRJNA744060", "44679", "252", "0.871508", "2.19620016", "Helicobacter japonicus", "425400", "Bacteria", "Bacteria", "42.7", "0.0405", "", "NR", "WP_276897614.1", "425400", "g44350", "i0", "65.5", "0.654761904761905", "29", "10", "34.5", "0", "3", "89", "296", "324", "WP_276897614.1 BspA family leucine-rich repeat surface protein [Helicobacter japonicus]", "diamond", "165", "42.7", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter japonicus"]], "truncated": false, "filtered_table_rows_count": 19, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"bioproject\" = :p0 and \"tax_kingdom\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "PRJNA744060", "p1": "Pseudomonadati", "p2": "Campylobacterota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA744060&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "PRJNA744060", "label": "PRJNA744060", "count": 19, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA744060&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "diamond", "label": "diamond", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA744060&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota&analysis=diamond", "selected": false}, {"value": "blastn", "label": "blastn", "count": 3, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA744060&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota&analysis=blastn", "selected": false}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA744060&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 19, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA744060&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA744060&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA744060&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 19, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA744060&tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA744060&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "Campylobacterota", "label": "Campylobacterota", "count": 19, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA744060&tax_kingdom=Pseudomonadati", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 470.4218970000511}