{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where bioproject = \"PRJNA699078\", tax_phylum = \"Campylobacterota\" and tax_superkingdom = \"Bacteria\"", "rows": [[3735924, "PRJNA699078_S_NODE_86883_length_180_cov_1.015267_g85934_i0", "PRJNA699078", "86883", "180", "1.015267", "1.8274806", "Helicobacter", "209", "Bacteria", "Bacteria", "327", "2.2699999999999996e-85", "", "NTclustered", "gi|2157106196|dbj|AP025196.1|", "213", "g85934", "i0", "99.444", "136.744444444444", "180", "1", "100", "0", "1", "180", "137075", "137254", "Helicobacter cinaedi T36 DNA, complete genome", "blastn", "24614", "327", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter cinaedi"], [5012395, "PRJNA699078_S_NODE_39664_length_274_cov_2.915556_g38715_i0", "PRJNA699078", "39664", "274", "2.915556", "7.98862344", "Helicobacter", "209", "Bacteria", "Bacteria", "507", "4.47e-139", "", "NTclustered", "gi|50957158|gb|AY596243.1|", "32025", "g38715", "i0", "100", "135.956204379562", "274", "0", "100", "0", "1", "274", "1353", "1626", "Helicobacter hepaticus strain MIT Hh-2 23S ribosomal RNA gene, partial sequence", "blastn", "37252", "507", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter hepaticus"], [11387674, "PRJNA699078_S_NODE_33049_length_300_cov_3.677291_g32100_i0", "PRJNA699078", "33049", "300", "3.677291", "11.031873", "Arcobacter", "28196", "Bacteria", "Bacteria", "52.8", "0.028", "", "NTclustered", "gi|1847331607|gb|CP053835.1|", "873191", "g32100", "i0", "100", "0.186666666666667", "28", "0", "9", "0", "172", "199", "2296400", "2296427", "Arcobacter defluvii strain LMG 25694 chromosome, complete genome", "blastn", "56", "52.8", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Arcobacteraceae", "Arcobacter", "Arcobacter defluvii"], [15985007, "PRJNA699078_S_NODE_50733_length_240_cov_1.612565_g49784_i0", "PRJNA699078", "50733", "240", "1.612565", "3.870156", "Sulfurimonas sp. SWIR-19", "2878390", "Bacteria", "Bacteria", "52.8", "0.022", "", "NTclustered", "gi|2111132204|gb|CP084578.1|", "2878390", "g49784", "i0", "100", "0.116666666666667", "28", "0", "12", "0", "196", "223", "407469", "407442", "Sulfurimonas sp. SWIR-19 chromosome, complete genome", "blastn", "28", "52.8", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Sulfurimonadaceae", "Sulfurimonas", "Sulfurimonas sp. SWIR-19"], [16487043, "PRJNA699078_S_NODE_14773_length_418_cov_1.268293_g13835_i0", "PRJNA699078", "14773", "418", "1.268293", "5.30146474", "Helicobacter", "209", "Bacteria", "Bacteria", "773", "0", "", "NTclustered", "gi|50957158|gb|AY596243.1|", "32025", "g13835", "i0", "100", "128.047846889952", "418", "0", "100", "0", "1", "418", "1071", "654", "Helicobacter hepaticus strain MIT Hh-2 23S ribosomal RNA gene, partial sequence", "blastn", "53524", "773", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter hepaticus"], [17260322, "PRJNA699078_S_NODE_55454_length_229_cov_0.988889_g54505_i0", "PRJNA699078", "55454", "229", "0.988889", "2.26455581", "Helicobacter hepaticus", "32025", "Bacteria", "Bacteria", "418", "1.7499999999999995e-112", "", "NTclustered", "gi|32263428|gb|AE017125.1|", "235279", "g54505", "i0", "99.563", "27.4934497816594", "229", "1", "100", "0", "1", "229", "360251", "360023", "Helicobacter hepaticus ATCC 51449, complete genome", "blastn", "6296", "418", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter hepaticus"], [32748998, "PRJNA699078_S_NODE_98280_length_168_cov_1.747899_g97331_i0", "PRJNA699078", "98280", "168", "1.747899", "2.93647032", "Campylobacterales", "213849", "Bacteria", "Bacteria", "56.6", "1.68e-7", "", "NR", "WP_027305268.1", "374106", "g97331", "i0", "51.8", "34.9107142857143", "56", "20", "87.5", "1", "160", "14", "271", "326", "WP_027305268.1 molecular chaperone HtpG [Campylobacter cuniculorum]", "diamond", "5865", "57", "0.992982456140351", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter cuniculorum"]], "truncated": false, "filtered_table_rows_count": 7, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"bioproject\" = :p0 and \"tax_phylum\" = :p1 and \"tax_superkingdom\" = :p2 order by rowid limit 101", "params": {"p0": "PRJNA699078", "p1": "Campylobacterota", "p2": "Bacteria"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA699078&tax_phylum=Campylobacterota&tax_superkingdom=Bacteria", "results": [{"value": "PRJNA699078", "label": "PRJNA699078", "count": 7, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_phylum=Campylobacterota&tax_superkingdom=Bacteria", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA699078&tax_phylum=Campylobacterota&tax_superkingdom=Bacteria", "results": [{"value": "blastn", "label": "blastn", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA699078&tax_phylum=Campylobacterota&tax_superkingdom=Bacteria&analysis=blastn", "selected": false}, {"value": "diamond", "label": "diamond", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA699078&tax_phylum=Campylobacterota&tax_superkingdom=Bacteria&analysis=diamond", "selected": false}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA699078&tax_phylum=Campylobacterota&tax_superkingdom=Bacteria", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 7, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA699078&tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA699078&tax_phylum=Campylobacterota&tax_superkingdom=Bacteria", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA699078&tax_phylum=Campylobacterota&tax_superkingdom=Bacteria", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 7, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA699078&tax_phylum=Campylobacterota&tax_superkingdom=Bacteria&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA699078&tax_phylum=Campylobacterota&tax_superkingdom=Bacteria", "results": [{"value": "Campylobacterota", "label": "Campylobacterota", "count": 7, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA699078&tax_superkingdom=Bacteria", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 190.1873239548877}