{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where bioproject = \"PRJNA597223\", tax_kingdom = \"Pseudomonadati\" and tax_phylum = \"Spirochaetota\"", "rows": [[569061, "PRJNA597223_P_NODE_37321_length_236_cov_13.074627_g35475_i0", "PRJNA597223", "37321", "236", "13.074627", "30.85611972", "Treponema vincentii", "69710", "Bacteria", "Bacteria", "409", "1.09e-109", "", "NTclustered", "gi|2265136109|gb|CP051197.1|", "69710", "g35475", "i0", "98.696", "188.177966101695", "230", "3", "97", "0", "4", "233", "325780", "325551", "Treponema vincentii strain OMZ 802 chromosome, complete genome", "blastn", "44410", "409", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema vincentii"], [1140596, "PRJNA597223_P_NODE_13141_length_468_cov_3.773672_g11381_i0", "PRJNA597223", "13141", "468", "3.773672", "17.66078496", "Treponema", "157", "Bacteria", "Bacteria", "800", "0", "", "NTclustered", "gi|1996291085|gb|CP027017.1|", "58231", "g11381", "i0", "97.845", "190.938034188034", "464", "9", "99", "1", "1", "463", "1015644", "1015181", "Treponema medium strain T19 chromosome, complete genome", "blastn", "89359", "800", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema medium"], [4396707, "PRJNA597223_P_NODE_40724_length_223_cov_30.872340_g38878_i0", "PRJNA597223", "40724", "223", "30.87234", "68.8453182", "Treponema vincentii", "69710", "Bacteria", "Bacteria", "379", "7.999999999999999e-101", "", "NTclustered", "gi|2265136109|gb|CP051197.1|", "69710", "g38878", "i0", "97.309", "193.695067264574", "223", "6", "100", "0", "1", "223", "327209", "327431", "Treponema vincentii strain OMZ 802 chromosome, complete genome", "blastn", "43194", "379", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema vincentii"], [6947495, "PRJNA597223_P_NODE_53606_length_190_cov_2.561290_g51760_i0", "PRJNA597223", "53606", "190", "2.56129", "4.866451", "Treponema vincentii", "69710", "Bacteria", "Bacteria", "108", "3.43e-19", "", "NTclustered", "gi|2265136109|gb|CP051197.1|", "69710", "g51760", "i0", "94.286", "1.10526315789474", "70", "4", "37", "0", "116", "185", "1644834", "1644903", "Treponema vincentii strain OMZ 802 chromosome, complete genome", "blastn", "210", "108", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema vincentii"], [7518474, "PRJNA597223_P_NODE_35086_length_246_cov_1140.199052_g33240_i0", "PRJNA597223", "35086", "246", "1140.199052", "2804.88966792", "Treponema", "157", "Bacteria", "Bacteria", "446", "8.719999999999999e-121", "", "NTclustered", "gi|6049688|gb|AF182835.1|AF182835", "105289", "g33240", "i0", "99.59", "99.0528455284553", "244", "1", "99", "0", "3", "246", "1152", "1395", "Treponema sp. 3:G:BB003 16S ribosomal RNA gene, partial sequence", "blastn", "24367", "446", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema sp. 3:G:BB003"], [8222050, "PRJNA597223_P_NODE_17307_length_396_cov_7.581717_g15493_i0", "PRJNA597223", "17307", "396", "7.581717", "30.02359932", "Treponema parvum", "138851", "Bacteria", "Bacteria", "254", "9.68e-63", "", "NTclustered", "gi|2023444933|gb|CP054257.1|", "138851", "g15493", "i0", "84.766", "36.1818181818182", "256", "35", "91", "4", "9", "262", "1516525", "1516778", "Treponema parvum strain ATCC 700773 chromosome, complete genome", "blastn", "14328", "254", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema parvum"], [9497255, "PRJNA597223_P_NODE_19528_length_367_cov_146.075301_g17700_i0", "PRJNA597223", "19528", "367", "146.075301", "536.09635467", "uncultured Treponema sp.", "162155", "Bacteria", "Bacteria", "379", "1.41e-100", "", "NTclustered", "gi|375244454|gb|JQ654180.1|", "162155", "g17700", "i0", "99.519", "54.6811989100817", "208", "1", "57", "0", "1", "208", "208", "1", "Uncultured Treponema sp. clone 3:6P47 16S ribosomal RNA gene, partial sequence", "blastn", "20068", "379", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "uncultured Treponema sp."], [10773608, "PRJNA597223_P_NODE_56209_length_188_cov_2.163399_g54363_i0", "PRJNA597223", "56209", "188", "2.163399", "4.06719012", "Treponema denticola", "158", "Bacteria", "Bacteria", "84.2", "5.71e-12", "", "NTclustered", "gi|2265174965|gb|CP051523.1|", "158", "g54363", "i0", "91.667", "0.319148936170213", "60", "5", "32", "0", "6", "65", "1833993", "1834052", "Treponema denticola strain OMZ 852 chromosome, complete genome", "blastn", "60", "84.2", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema denticola"], [10773798, "PRJNA597223_P_NODE_76389_length_162_cov_1.503937_g74543_i0", "PRJNA597223", "76389", "162", "1.503937", "2.43637794", "uncultured Treponema sp.", "162155", "Bacteria", "Bacteria", "215", "1.62e-51", "", "NTclustered", "gi|1826584143|gb|MT257087.1|", "162155", "g74543", "i0", "90.741", "1", "162", "14", "99", "1", "1", "161", "305", "144", "Uncultured Treponema sp. clone Mbo017R1_RC 23S ribosomal RNA gene, partial sequence", "blastn", "162", "215", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "uncultured Treponema sp."], [15168748, "PRJNA597223_P_NODE_12992_length_471_cov_5.655963_g11239_i0", "PRJNA597223", "12992", "471", "5.655963", "26.63958573", "Treponema", "157", "Bacteria", "Bacteria", "837", "0", "", "NTclustered", "gi|1996296230|gb|CP031393.1|", "58231", "g11239", "i0", "98.726", "193.71974522293", "471", "6", "100", "0", "1", "471", "1015265", "1014795", "Treponema medium strain ATCC 700293 chromosome, complete genome", "blastn", "91242", "843", "0.99288256227758", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema medium"], [15168757, "PRJNA597223_P_NODE_14632_length_440_cov_35.955556_g12843_i0", "PRJNA597223", "14632", "440", "35.955556", "158.2044464", "Treponema", "157", "Bacteria", "Bacteria", "793", "0", "", "NTclustered", "gi|3132611|gb|AF061347.1|AF061347", "76133", "g12843", "i0", "99.769", "101.127272727273", "432", "1", "98", "0", "2", "433", "776", "345", "Treponema sp. I:Q:AT20 16S ribosomal RNA gene, complete sequence", "blastn", "44496", "793", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema sp. I:Q:AT20"], [18420949, "PRJNA597223_P_NODE_34335_length_250_cov_2.488372_g32489_i0", "PRJNA597223", "34335", "250", "2.488372", "6.22093", "Treponema denticola", "158", "Bacteria", "Bacteria", "433", "6.92e-117", "", "NTclustered", "gi|2265166044|gb|CP051303.1|", "158", "g32489", "i0", "99.58", "6.66", "238", "0", "95", "1", "8", "244", "1020659", "1020422", "Treponema denticola strain OT2B chromosome, complete genome", "blastn", "1665", "433", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema denticola"], [18992209, "PRJNA597223_P_NODE_75075_length_163_cov_6.031250_g73229_i0", "PRJNA597223", "75075", "163", "6.03125", "9.8309375", "Treponema", "157", "Bacteria", "Bacteria", "278", "2.06e-70", "", "NTclustered", "gi|2034589463|gb|CP050497.1|", "69710", "g73229", "i0", "98.113", "272.226993865031", "159", "3", "98", "0", "2", "160", "216929", "217087", "Treponema vincentii strain OMZ 806 chromosome, complete genome", "blastn", "44373", "278", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema vincentii"], [22817816, "PRJNA597223_P_NODE_13018_length_471_cov_2.461009_g11264_i0", "PRJNA597223", "13018", "471", "2.461009", "11.59135239", "Leptospira weilii", "28184", "Bacteria", "Bacteria", "266", "5.149999999999999e-89", "", "NR", "WP_155722658.1", "28184", "g11264", "i0", "87.1", "4.45859872611465", "140", "18", "89.2", "0", "48", "467", "1", "140", "WP_155722658.1 catalase, partial [Leptospira weilii]", "diamond", "2100", "266", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Leptospirales", "Leptospiraceae", "Leptospira", "Leptospira weilii"], [22817973, "PRJNA597223_P_NODE_63658_length_181_cov_6.363014_g61812_i0", "PRJNA597223", "63658", "181", "6.363014", "11.51705534", "Treponema", "157", "Bacteria", "Bacteria", "335", "1.36e-87", "", "NTclustered", "gi|2215064721|gb|ON136466.1|", "59892", "g61812", "i0", "100", "99.0441988950276", "181", "0", "100", "0", "1", "181", "244", "64", "Treponema amylovorum isolate Otu67 16S ribosomal RNA gene, partial sequence", "blastn", "17927", "335", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema amylovorum"], [22818027, "PRJNA597223_P_NODE_74298_length_164_cov_6.875969_g72452_i0", "PRJNA597223", "74298", "164", "6.875969", "11.27658916", "Treponema", "157", "Bacteria", "Bacteria", "191", "2.78e-44", "", "NTclustered", "gi|1928027651|gb|CP061839.1|", "409322", "g72452", "i0", "89.103", "176.44512195122", "156", "14", "96", "3", "3", "156", "387825", "387979", "Treponema pedis strain KS1 chromosome, complete genome", "blastn", "28937", "191", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema pedis"], [24092622, "PRJNA597223_P_NODE_27499_length_292_cov_8.194553_g25653_i0", "PRJNA597223", "27499", "292", "8.194553", "23.92809476", "Treponema", "157", "Bacteria", "Bacteria", "401", "2.3299999999999993e-107", "", "NTclustered", "gi|1807378492|gb|CP048020.1|", "69710", "g25653", "i0", "91.497", "197.965753424658", "294", "22", "100", "3", "1", "292", "2079655", "2079363", "Treponema vincentii strain OMZ 804 chromosome, complete genome", "blastn", "57806", "401", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema vincentii"], [24092667, "PRJNA597223_P_NODE_41659_length_220_cov_3.405405_g39813_i0", "PRJNA597223", "41659", "220", "3.405405", "7.491891", "Treponema", "157", "Bacteria", "Bacteria", "252", "1.79e-62", "", "NTclustered", "gi|2265166044|gb|CP051303.1|", "158", "g39813", "i0", "90.625", "292.863636363636", "192", "15", "87", "3", "29", "219", "1644364", "1644175", "Treponema denticola strain OT2B chromosome, complete genome", "blastn", "64430", "254", "0.992125984251969", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema denticola"], [28311652, "PRJNA597223_P_NODE_86366_length_151_cov_3.094828_g84520_i0", "PRJNA597223", "86366", "151", "3.094828", "4.67319028", "Treponema sp.", "166", "Bacteria", "Bacteria", "70.1", "2.39e-12", "", "NR", "MEL3906214.1", "166", "g84520", "i0", "70", "0.993377483443709", "50", "13", "95.4", "1", "8", "151", "275", "324", "MEL3906214.1 AAA family ATPase [Treponema sp.]", "diamond", "150", "70.1", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema sp."], [28722118, "PRJNA597223_P_NODE_53527_length_190_cov_2.793548_g51681_i0", "PRJNA597223", "53527", "190", "2.793548", "5.3077412", "Treponema socranskii", "53419", "Bacteria", "Bacteria", "42.4", "0.0236", "", "NR", "WP_021330526.1", "53419", "g51681", "i0", "87.5", "0.378947368421053", "24", "3", "37.9", "0", "73", "2", "22", "45", "WP_021330526.1 hypothetical protein [Treponema socranskii]", "diamond", "72", "42.4", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema socranskii"], [28753570, "PRJNA597223_P_NODE_84887_length_153_cov_0.923729_g83041_i0", "PRJNA597223", "84887", "153", "0.923729", "1.41330537", "Spirochaetia bacterium", "2053615", "Bacteria", "Bacteria", "45.4", "2.04e-4", "", "NR", "NCB03411.1", "2053615", "g83041", "i0", "52.5", "0.784313725490196", "40", "19", "78.4", "0", "123", "4", "1", "40", "NCB03411.1 hypothetical protein [Spirochaetia bacterium]", "diamond", "120", "45.4", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", null, null, null, "Spirochaetia bacterium"], [29258522, "PRJNA597223_P_NODE_86089_length_151_cov_4.318966_g84243_i0", "PRJNA597223", "86089", "151", "4.318966", "6.52163866", "Thiospirochaeta perfilievii", "252967", "Bacteria", "Bacteria", "58.5", "2.35e-8", "", "NR", "WP_342781933.1", "252967", "g84243", "i0", "52.1", "2.78145695364238", "71", "9", "91.4", "1", "9", "146", "192", "262", "WP_342781933.1 IS3 family transposase [Thiospirochaeta perfilievii]", "diamond", "420", "58.5", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Spirochaetaceae", "Thiospirochaeta", "Thiospirochaeta perfilievii"], [29732170, "PRJNA597223_P_NODE_54890_length_189_cov_2.350649_g53044_i0", "PRJNA597223", "54890", "189", "2.350649", "4.44272661", "Treponema lecithinolyticum", "53418", "Bacteria", "Bacteria", "52.4", "7.01e-6", "", "NR", "WP_040848258.1", "53418", "g53044", "i0", "100", "0.380952380952381", "24", "0", "38.1", "0", "3", "74", "257", "280", "WP_040848258.1 hypothetical protein [Treponema lecithinolyticum]", "diamond", "72", "52.4", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema lecithinolyticum"], [31438598, "PRJNA597223_P_NODE_64596_length_180_cov_1.531034_g62750_i0", "PRJNA597223", "64596", "180", "1.531034", "2.7558612", "Spirochaetota bacterium", "2202144", "Bacteria", "Bacteria", "112", "5.1e-28", "", "NR", "TXG82032.1", "2202144", "g62750", "i0", "93.3", "1", "60", "4", "100", "0", "180", "1", "130", "189", "TXG82032.1 MAG: hypothetical protein E6R13_05540 [Spirochaetota bacterium]", "diamond", "180", "112", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", null, null, null, null, "Spirochaetota bacterium"], [31723273, "PRJNA597223_P_NODE_52957_length_191_cov_2.365385_g51111_i0", "PRJNA597223", "52957", "191", "2.365385", "4.51788535", "Treponema socranskii", "53419", "Bacteria", "Bacteria", "42.4", "0.0255", "", "NR", "WP_021329944.1", "53419", "g51111", "i0", "87", "0.738219895287958", "23", "3", "36.1", "0", "9", "77", "106", "128", "WP_021329944.1 ComEC/Rec2 family competence protein [Treponema socranskii]", "diamond", "141", "42.4", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema socranskii"]], "truncated": false, "filtered_table_rows_count": 25, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"bioproject\" = :p0 and \"tax_kingdom\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "PRJNA597223", "p1": "Pseudomonadati", "p2": "Spirochaetota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA597223&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota", "results": [{"value": "PRJNA597223", "label": "PRJNA597223", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA597223&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota", "results": [{"value": "blastn", "label": "blastn", "count": 17, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA597223&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota&analysis=blastn", "selected": false}, {"value": "diamond", "label": "diamond", "count": 8, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA597223&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota&analysis=diamond", "selected": false}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA597223&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA597223&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA597223&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA597223&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA597223&tax_phylum=Spirochaetota", "selected": true}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA597223&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota", "results": [{"value": "Spirochaetota", "label": "Spirochaetota", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA597223&tax_kingdom=Pseudomonadati", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 382.46295399585506}