{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where bioproject = \"PRJNA437204\" and tax_clade = \"Methanomada group\"", "rows": [[1708061, "PRJNA437204_P_NODE_69662_length_265_cov_1.947917_g69363_i0", "PRJNA437204", "69662", "265", "1.947917", "5.16198005", "Methanobrevibacter ruminantium", "83816", "Archaea", "Archaea", "344", "3.57e-90", "", "NTclustered", "gi|288541968|gb|CP001719.1|", "634498", "g69363", "i0", "90.262", "8.86792452830189", "267", "20", "99", "4", "1", "264", "2614529", "2614266", "Methanobrevibacter ruminantium M1, complete genome", "blastn", "2350", "344", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "Methanobrevibacter ruminantium"], [3640406, "PRJNA437204_P_NODE_117843_length_243_cov_0.905882_g117544_i0", "PRJNA437204", "117843", "243", "0.905882", "2.20129326", "Methanobacteriaceae", "2159", "Archaea", "Archaea", "76.8", "1.3e-9", "", "NTclustered", "gi|952971377|emb|LN734822.1|", "2162", "g117544", "i0", "97.727", "20.4567901234568", "44", "1", "18", "0", "197", "240", "728374", "728417", "Methanobacterium formicicum genome assembly isolate Mb9, chromosome : I", "blastn", "4971", "76.8", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobacterium", "Methanobacterium formicicum"], [7468131, "PRJNA437204_P_NODE_71266_length_263_cov_1.310526_g70967_i0", "PRJNA437204", "71266", "263", "1.310526", "3.44668338", "Methanobrevibacter", "2172", "Archaea", "Archaea", "481", "2.58e-131", "", "NTclustered", "gi|1294447101|gb|CP017803.1|", "2173", "g70967", "i0", "99.62", "144.201520912548", "263", "1", "100", "0", "1", "263", "265248", "264986", "Methanobrevibacter smithii strain KB11 chromosome, complete genome", "blastn", "37925", "481", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "Methanobrevibacter smithii"], [9359808, "PRJNA437204_P_NODE_112708_length_244_cov_0.900585_g112409_i0", "PRJNA437204", "112708", "244", "0.900585", "2.1974274", "Methanobrevibacter sp. YE315", "1609968", "Archaea", "Archaea", "351", "1.9399999999999998e-92", "", "NTclustered", "gi|985614202|gb|CP010834.1|", "1609968", "g112409", "i0", "92.623", "2.90163934426229", "244", "18", "100", "0", "1", "244", "218749", "218506", "Methanobrevibacter sp. YE315, complete genome", "blastn", "708", "351", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "Methanobrevibacter sp. YE315"], [9360109, "PRJNA437204_P_NODE_129568_length_234_cov_4.726708_g129269_i0", "PRJNA437204", "129568", "234", "4.726708", "11.06049672", "Methanobrevibacter sp. YE315", "1609968", "Archaea", "Archaea", "340", "3.989999999999999e-89", "", "NTclustered", "gi|985614202|gb|CP010834.1|", "1609968", "g129269", "i0", "92.797", "12.4957264957265", "236", "15", "100", "2", "1", "234", "1671767", "1671532", "Methanobrevibacter sp. YE315, complete genome", "blastn", "2924", "340", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "Methanobrevibacter sp. YE315"], [10017912, "PRJNA437204_P_NODE_37748_length_330_cov_4.688716_g37449_i0", "PRJNA437204", "37748", "330", "4.688716", "15.4727628", "Methanobrevibacter", "2172", "Archaea", "Archaea", "601", "2.46e-167", "", "NTclustered", "gi|5725308|emb|AJ009959.1|", "66852", "g37449", "i0", "100", "105.075757575758", "325", "0", "98", "0", "6", "330", "1", "325", "Methanobrevibacter sp. NT7, 16S rRNA gene, partial", "blastn", "34675", "604", "0.995033112582781", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "Methanobrevibacter sp."], [10636186, "PRJNA437204_P_NODE_26809_length_370_cov_2.838384_g26510_i0", "PRJNA437204", "26809", "370", "2.838384", "10.5020208", "Methanosphaera sp. BMS", "1789762", "Archaea", "Archaea", "667", "0", "", "NTclustered", "gi|1409374143|gb|CP014213.1|", "1789762", "g26510", "i0", "99.191", "45.8135135135135", "371", "2", "100", "1", "1", "370", "2067180", "2066810", "Methanosphaera sp. BMS chromosome, complete genome", "blastn", "16951", "667", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanosphaera", "Methanosphaera sp. BMS"], [10636717, "PRJNA437204_P_NODE_52769_length_294_cov_2.484163_g52470_i0", "PRJNA437204", "52769", "294", "2.484163", "7.30343922", "Methanosphaera sp. BMS", "1789762", "Archaea", "Archaea", "499", "8.099999999999998e-137", "", "NTclustered", "gi|1409374143|gb|CP014213.1|", "1789762", "g52470", "i0", "97.279", "11.7517006802721", "294", "8", "100", "0", "1", "294", "1090855", "1090562", "Methanosphaera sp. BMS chromosome, complete genome", "blastn", "3455", "499", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanosphaera", "Methanosphaera sp. BMS"], [12569026, "PRJNA437204_P_NODE_7770_length_595_cov_1.429119_g7475_i0", "PRJNA437204", "7770", "595", "1.429119", "8.50325805", "Methanobrevibacter", "2172", "Archaea", "Archaea", "1066", "0", "", "NTclustered", "gi|1651227316|emb|LR590664.1|", "2173", "g7475", "i0", "98.992", "105.678991596639", "595", "6", "100", "0", "1", "595", "11", "605", "Methanobrevibacter smithii partial 16S rRNA gene, strain C2 CSUR P5816", "blastn", "62879", "1066", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "Methanobrevibacter smithii"], [18283540, "PRJNA437204_P_NODE_123635_length_242_cov_0.911243_g123336_i0", "PRJNA437204", "123635", "242", "0.911243", "2.20520806", "uncultured Methanobrevibacter sp.", "253161", "Archaea", "Archaea", "156", "2.8199999999999994e-42", "", "NR", "WP_295614768.1", "253161", "g123336", "i0", "91.3", "0.991735537190083", "80", "7", "99.2", "0", "242", "3", "139", "218", "WP_295614768.1 GTP-binding protein [uncultured Methanobrevibacter sp.]", "diamond", "240", "156", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "uncultured Methanobrevibacter sp."], [19558698, "PRJNA437204_P_NODE_52276_length_295_cov_15.873874_g51977_i0", "PRJNA437204", "52276", "295", "15.873874", "46.8279283", "Methanobrevibacter olleyae", "294671", "Archaea", "Archaea", "401", "2.3599999999999993e-107", "", "NTclustered", "gi|998157363|gb|CP014265.1|", "294671", "g51977", "i0", "91.186", "6.34237288135593", "295", "26", "100", "0", "1", "295", "497420", "497714", "Methanobrevibacter olleyae strain YLM1 chromosome, complete genome", "blastn", "1871", "401", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "Methanobrevibacter olleyae"], [22109392, "PRJNA437204_P_NODE_51338_length_297_cov_21.754464_g51039_i0", "PRJNA437204", "51338", "297", "21.754464", "64.61075808", "Methanobrevibacter ruminantium", "83816", "Archaea", "Archaea", "333", "8.8e-87", "", "NTclustered", "gi|288541968|gb|CP001719.1|", "634498", "g51039", "i0", "86.869", "3.57575757575758", "297", "39", "100", "0", "1", "297", "1064333", "1064629", "Methanobrevibacter ruminantium M1, complete genome", "blastn", "1062", "333", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "Methanobrevibacter ruminantium"], [24658123, "PRJNA437204_P_NODE_118600_length_243_cov_0.905882_g118301_i0", "PRJNA437204", "118600", "243", "0.905882", "2.20129326", "uncultured Methanobrevibacter sp.", "253161", "Archaea", "Archaea", "155", "7.56e-42", "", "NR", "WP_295614768.1", "253161", "g118301", "i0", "96.3", "1", "81", "3", "100", "0", "243", "1", "7", "87", "WP_295614768.1 GTP-binding protein [uncultured Methanobrevibacter sp.]", "diamond", "243", "155", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "uncultured Methanobrevibacter sp."], [27123563, "PRJNA437204_P_NODE_124082_length_242_cov_0.911243_g123783_i0", "PRJNA437204", "124082", "242", "0.911243", "2.20520806", "Methanobrevibacter", "2172", "Archaea", "Archaea", "144", "3.929999999999999e-40", "", "NR", "WP_069575356.1", "2172", "g123783", "i0", "87.5", "1.98347107438017", "80", "10", "99.2", "0", "3", "242", "8", "87", "WP_069575356.1 MULTISPECIES: beta-ribofuranosylaminobenzene 5'-phosphate synthase [Methanobrevibacter]", "diamond", "480", "144", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", null], [27455291, "PRJNA437204_P_NODE_127383_length_241_cov_0.916667_g127084_i0", "PRJNA437204", "127383", "241", "0.916667", "2.20916747", "unclassified Methanobrevibacter", "2638681", "Archaea", "Archaea", "148", "2.36e-41", "", "NR", "WP_305514040.1", "2638681", "g127084", "i0", "91.3", "1.99170124481328", "80", "7", "99.6", "0", "241", "2", "57", "136", "WP_305514040.1 MULTISPECIES: nicotinate mononucleotide-dependent phosphoribosyltransferase CobT [unclassified Methanobrevibacter]", "diamond", "480", "148", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", null], [28181081, "PRJNA437204_P_NODE_88586_length_249_cov_1.181818_g88287_i0", "PRJNA437204", "88586", "249", "1.181818", "2.94272682", "Methanobrevibacter sp.", "66852", "Archaea", "Archaea", "42.4", "0.00798", "", "NR", "MBO7695000.1", "66852", "g88287", "i0", "53.3", "0.542168674698795", "45", "19", "51.8", "1", "144", "16", "4", "48", "MBO7695000.1 hypothetical protein [Methanobrevibacter sp.]", "diamond", "135", "42.4", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "Methanobrevibacter sp."], [30265724, "PRJNA437204_P_NODE_112812_length_244_cov_0.900585_g112513_i0", "PRJNA437204", "112812", "244", "0.900585", "2.1974274", "Methanobrevibacter sp.", "66852", "Archaea", "Archaea", "142", "3.039999999999999e-38", "", "NR", "WP_292786634.1", "66852", "g112513", "i0", "88.8", "1.9672131147541", "80", "9", "98.4", "0", "242", "3", "8", "87", "WP_292786634.1 TrkH family potassium uptake protein [Methanobrevibacter sp.]", "diamond", "480", "142", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "Methanobrevibacter sp."], [30834168, "PRJNA437204_P_NODE_105334_length_246_cov_0.890173_g105035_i0", "PRJNA437204", "105334", "246", "0.890173", "2.18982558", "Methanobrevibacter sp.", "66852", "Archaea", "Archaea", "111", "3.5800000000000003e-29", "", "NR", "WP_405268717.1", "66852", "g105035", "i0", "65.9", "2.82926829268293", "85", "24", "98.8", "2", "245", "3", "1", "84", "WP_405268717.1 hypothetical protein [Methanobrevibacter sp.]", "diamond", "696", "111", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "Methanobrevibacter sp."], [31023793, "PRJNA437204_P_NODE_55035_length_290_cov_1.202765_g54736_i0", "PRJNA437204", "55035", "290", "1.202765", "3.4880185", "uncultured Methanobrevibacter sp.", "253161", "Archaea", "Archaea", "175", "1.3e-52", "", "NR", "WP_296788087.1", "253161", "g54736", "i0", "93.2", "0.910344827586207", "88", "6", "91", "0", "264", "1", "1", "88", "WP_296788087.1 class II glutamine amidotransferase [uncultured Methanobrevibacter sp.]", "diamond", "264", "175", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "uncultured Methanobrevibacter sp."], [31023810, "PRJNA437204_P_NODE_92195_length_249_cov_0.875000_g91896_i0", "PRJNA437204", "92195", "249", "0.875", "2.17875", "Methanobrevibacter thaueri", "190975", "Archaea", "Archaea", "149", "6.11e-42", "", "NR", "WP_116591199.1", "190975", "g91896", "i0", "92.3", "0.939759036144578", "78", "6", "94", "0", "1", "234", "159", "236", "WP_116591199.1 NAD-dependent epimerase/dehydratase family protein [Methanobrevibacter thaueri]", "diamond", "234", "149", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "Methanobrevibacter thaueri"], [31149715, "PRJNA437204_P_NODE_84355_length_250_cov_0.870056_g84056_i0", "PRJNA437204", "84355", "250", "0.870056", "2.17514", "Methanobrevibacter sp.", "66852", "Archaea", "Archaea", "108", "3.87e-28", "", "NR", "MBQ2653521.1", "66852", "g84056", "i0", "67.9", "0.936", "78", "23", "91.2", "2", "229", "2", "1", "78", "MBQ2653521.1 hypothetical protein [Methanobrevibacter sp.]", "diamond", "234", "108", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "Methanobrevibacter sp."], [31750900, "PRJNA437204_P_NODE_51757_length_297_cov_1.031250_g51458_i0", "PRJNA437204", "51757", "297", "1.03125", "3.0628125", "Methanobrevibacter thaueri", "190975", "Archaea", "Archaea", "198", "1.35e-61", "", "NR", "WP_303723960.1", "190975", "g51458", "i0", "97.8", "13.8383838383838", "92", "2", "92.9", "0", "276", "1", "1", "92", "WP_303723960.1 class II glutamine amidotransferase [Methanobrevibacter thaueri]", "diamond", "4110", "198", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "Methanobrevibacter thaueri"], [32605142, "PRJNA437204_P_NODE_69280_length_266_cov_1.357513_g68981_i0", "PRJNA437204", "69280", "266", "1.357513", "3.6109845800000002", "Methanobacterium sp. SMA-27", "1495336", "Archaea", "Archaea", "57.4", "2.3e-7", "", "NR", "WP_197050653.1", "1495336", "g68981", "i0", "50", "0.586466165413534", "52", "26", "58.6", "0", "111", "266", "1", "52", "WP_197050653.1 ABC transporter ATP-binding protein [Methanobacterium sp. SMA-27]", "diamond", "156", "57.4", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobacterium", "Methanobacterium sp. SMA-27"]], "truncated": false, "filtered_table_rows_count": 23, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"bioproject\" = :p0 and \"tax_clade\" = :p1 order by rowid limit 101", "params": {"p0": "PRJNA437204", "p1": "Methanomada group"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA437204&tax_clade=Methanomada+group", "results": [{"value": "PRJNA437204", "label": "PRJNA437204", "count": 23, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_clade=Methanomada+group", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA437204&tax_clade=Methanomada+group", "results": [{"value": "diamond", "label": "diamond", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA437204&tax_clade=Methanomada+group&analysis=diamond", "selected": false}, {"value": "blastn", "label": "blastn", "count": 11, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA437204&tax_clade=Methanomada+group&analysis=blastn", "selected": false}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA437204&tax_clade=Methanomada+group", "results": [{"value": "Archaea", "label": "Archaea", "count": 23, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA437204&tax_clade=Methanomada+group&tax_superkingdom=Archaea", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA437204&tax_clade=Methanomada+group", "results": [{"value": "Methanomada group", "label": "Methanomada group", "count": 23, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA437204", "selected": true}], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA437204&tax_clade=Methanomada+group", "results": [{"value": "Methanobacteriati", "label": "Methanobacteriati", "count": 23, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA437204&tax_clade=Methanomada+group&tax_kingdom=Methanobacteriati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA437204&tax_clade=Methanomada+group", "results": [{"value": "Methanobacteriota", "label": "Methanobacteriota", "count": 23, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA437204&tax_clade=Methanomada+group&tax_phylum=Methanobacteriota", "selected": false}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 403.49237799819093}