{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where bioproject = \"PRJNA395690\", tax_kingdom = \"Pseudomonadati\" and tax_phylum = \"Campylobacterota\"", "rows": [[4907007, "PRJNA395690_P_NODE_26284_length_171_cov_2.475410_g26132_i0", "PRJNA395690", "26284", "171", "2.47541", "4.2329511", "FCB group", "1783270", "Bacteria", "Bacteria", "316", "4.6e-82", "", "NTclustered", "gi|1483583505|emb|LT631429.1|", "204", "g26132", "i0", "100", "108", "171", "0", "100", "0", "1", "171", "33413", "33243", "Campylobacter showae genome assembly, plasmid: V", "blastn", "18468", "316", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter showae"], [4907036, "PRJNA395690_P_NODE_30544_length_165_cov_1.706897_g30392_i0", "PRJNA395690", "30544", "165", "1.706897", "2.81638005", "root", "1", "Root_unresolved", "Root_unresolved", "305", "9.59e-79", "", "NTclustered", "gi|1200166513|gb|KX931109.1|", "195", "g30392", "i0", "100", "24.230303030303", "165", "0", "100", "0", "1", "165", "248", "84", "Campylobacter coli lincosamide O-nucleotidyltransferase (lnuG) gene, complete cds", "blastn", "3998", "305", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter coli"], [10007204, "PRJNA395690_P_NODE_8548_length_276_cov_3.885463_g8396_i0", "PRJNA395690", "8548", "276", "3.885463", "10.72387788", "Campylobacter", "194", "Bacteria", "Bacteria", "510", "3.48e-140", "", "NTclustered", "gi|1483583505|emb|LT631429.1|", "204", "g8396", "i0", "100", "239.971014492754", "276", "0", "100", "0", "1", "276", "30514", "30789", "Campylobacter showae genome assembly, plasmid: V", "blastn", "66232", "510", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter showae"], [12557750, "PRJNA395690_P_NODE_32950_length_163_cov_1.754386_g32798_i0", "PRJNA395690", "32950", "163", "1.754386", "2.85964918", "Campylobacter", "194", "Bacteria", "Bacteria", "268", "1.24e-67", "", "NTclustered", "gi|1483583508|emb|LT631432.1|", "204", "g32798", "i0", "96.894", "2.48466257668712", "161", "3", "98", "1", "1", "159", "1388", "1548", "Campylobacter showae genome assembly, plasmid: VIII", "blastn", "405", "268", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter showae"], [13165228, "PRJNA395690_P_NODE_1231_length_705_cov_3.045732_g1102_i0", "PRJNA395690", "1231", "705", "3.045732", "21.4724106", "Arcobacter sp. AM70-1", "235130", "Bacteria", "Bacteria", "1230", "0", "", "NTclustered", "gi|32140587|dbj|AB112489.1|", "235130", "g1102", "i0", "98.156", "380.392907801418", "705", "13", "100", "0", "1", "705", "758", "54", "Arcobacter sp. AM70-1 gene for 23S rRNA, partial sequence", "blastn", "268177", "1230", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Arcobacteraceae", "Arcobacter", "Arcobacter sp. AM70-1"], [16989110, "PRJNA395690_P_NODE_26034_length_172_cov_1.634146_g25882_i0", "PRJNA395690", "26034", "172", "1.634146", "2.81073112", "Campylobacter ureolyticus", "827", "Bacteria", "Bacteria", "318", "1.2899999999999999e-82", "", "NTclustered", "gi|1829985141|gb|CP050963.1|", "827", "g25882", "i0", "100", "221.93023255814", "172", "0", "100", "0", "1", "172", "203380", "203209", "Campylobacter ureolyticus strain FDAARGOS_673 chromosome", "blastn", "38172", "318", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter ureolyticus"], [18263444, "PRJNA395690_P_NODE_37295_length_152_cov_2.436893_g37142_i0", "PRJNA395690", "37295", "152", "2.436893", "3.70407736", "Malaciobacter molluscorum", "1032072", "Bacteria", "Bacteria", "76.8", "7.37e-10", "", "NTclustered", "gi|1474788135|gb|CP032098.1|", "870501", "g37142", "i0", "95.745", "0.855263157894737", "47", "2", "31", "0", "104", "150", "790999", "791045", "Malaciobacter molluscorum LMG 25693 strain CECT 7696 chromosome, complete genome", "blastn", "130", "76.8", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Arcobacteraceae", "Malaciobacter", "Malaciobacter molluscorum"], [18930380, "PRJNA395690_P_NODE_10915_length_246_cov_2.228426_g10763_i0", "PRJNA395690", "10915", "246", "2.228426", "5.48192796", "Aliarcobacter", "2321111", "Bacteria", "Bacteria", "449", "6.74e-122", "", "NTclustered", "gi|1231709647|emb|LT906455.1|", "28197", "g10763", "i0", "99.593", "373.109756097561", "246", "1", "100", "0", "1", "246", "851630", "851875", "Arcobacter butzleri strain NCTC12481 genome assembly, chromosome: 1", "blastn", "91785", "449", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Arcobacteraceae", "Aliarcobacter", "Aliarcobacter butzleri"], [20205231, "PRJNA395690_P_NODE_32976_length_163_cov_1.675439_g32824_i0", "PRJNA395690", "32976", "163", "1.675439", "2.73096557", "Campylobacter", "194", "Bacteria", "Bacteria", "257", "2.68e-64", "", "NTclustered", "gi|1829985141|gb|CP050963.1|", "827", "g32824", "i0", "97.973", "6.38036809815951", "148", "3", "91", "0", "1", "148", "1531447", "1531300", "Campylobacter ureolyticus strain FDAARGOS_673 chromosome", "blastn", "1040", "257", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter ureolyticus"], [22756040, "PRJNA395690_P_NODE_36378_length_160_cov_3.567568_g36226_i0", "PRJNA395690", "36378", "160", "3.567568", "5.7081088", "Campylobacter", "194", "Bacteria", "Bacteria", "291", "2.5799999999999998e-74", "", "NTclustered", "gi|2093923041|gb|CP082872.1|", "76517", "g36226", "i0", "99.375", "2", "160", "1", "100", "0", "1", "160", "2180", "2021", "Campylobacter hominis strain FDAARGOS_1467 plasmid unnamed1, complete sequence", "blastn", "320", "291", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter hominis"], [26663536, "PRJNA395690_P_NODE_28301_length_167_cov_0.864407_g28149_i0", "PRJNA395690", "28301", "167", "0.864407", "1.44355969", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "111", "2.51e-28", "", "NR", "GAA8850103.1", "210", "g28149", "i0", "100", "0.988023952095808", "55", "0", "98.8", "0", "2", "166", "73", "127", "GAA8850103.1 hypothetical protein DUHN55_32560 [Helicobacter pylori]", "diamond", "165", "111", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [27471456, "PRJNA395690_P_NODE_6823_length_309_cov_0.980769_g6671_i0", "PRJNA395690", "6823", "309", "0.980769", "3.03057621", "Pseudomonadati", "3379134", "Bacteria", "Bacteria", "85.9", "3.46e-18", "", "NR", "KIM10424.1", "1539065", "g6671", "i0", "55.1", "1.33980582524272", "69", "31", "67", "0", "207", "1", "1", "69", "KIM10424.1 MAG: hypothetical protein KU38_07590 [Sulfurovum sp. FS08-3]", "diamond", "414", "85.9", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Sulfurovaceae", "Sulfurovum", "Sulfurovum sp. FS08-3"], [28559794, "PRJNA395690_P_NODE_18267_length_190_cov_2.546099_g18115_i0", "PRJNA395690", "18267", "190", "2.546099", "4.8375881", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "68.9", "4.22e-13", "", "NR", "GAA9125453.1", "210", "g18115", "i0", "91.5", "0.931578947368421", "59", "5", "93.2", "0", "177", "1", "2", "60", "GAA9125453.1 hypothetical protein Kyoto190A_0860 [Helicobacter pylori]", "diamond", "177", "68.9", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [29159784, "PRJNA395690_P_NODE_35789_length_161_cov_0.910714_g35637_i0", "PRJNA395690", "35789", "161", "0.910714", "1.46624954", "Arcobacter sp. CECT 8989", "2044509", "Bacteria", "Bacteria", "91.3", "1.63e-21", "", "NR", "WP_129088716.1", "2044509", "g35637", "i0", "77.4", "1.97515527950311", "53", "12", "98.8", "0", "2", "160", "24", "76", "WP_129088716.1 acyltransferase [Arcobacter sp. CECT 8989]", "diamond", "318", "91.3", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Arcobacteraceae", "Arcobacter", "Arcobacter sp. CECT 8989"], [32415038, "PRJNA395690_P_NODE_19159_length_188_cov_2.661871_g19007_i0", "PRJNA395690", "19159", "188", "2.661871", "5.00431748", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "56.2", "6.6e-9", "", "NR", "GAA8795519.1", "210", "g19007", "i0", "63.4", "0.654255319148936", "41", "14", "65.4", "1", "124", "2", "4", "43", "GAA8795519.1 hypothetical protein Kyoto149A_0380 [Helicobacter pylori]", "diamond", "123", "56.2", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [32793238, "PRJNA395690_P_NODE_27240_length_169_cov_1.675000_g27088_i0", "PRJNA395690", "27240", "169", "1.675", "2.83075", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "65.9", "2.84e-11", "", "NR", "GAA8796459.1", "210", "g27088", "i0", "76.2", "4.47337278106509", "42", "10", "74.6", "0", "147", "22", "129", "170", "GAA8796459.1 hypothetical protein Kyoto149A_1020 [Helicobacter pylori]", "diamond", "756", "65.9", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"]], "truncated": false, "filtered_table_rows_count": 16, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"bioproject\" = :p0 and \"tax_kingdom\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "PRJNA395690", "p1": "Pseudomonadati", "p2": "Campylobacterota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA395690&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "PRJNA395690", "label": "PRJNA395690", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA395690&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "blastn", "label": "blastn", "count": 10, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA395690&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota&analysis=blastn", "selected": false}, {"value": "diamond", "label": "diamond", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA395690&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota&analysis=diamond", "selected": false}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA395690&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA395690&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA395690&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA395690&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA395690&tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA395690&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "Campylobacterota", "label": "Campylobacterota", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA395690&tax_kingdom=Pseudomonadati", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 456.02404200008095}