{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where bioproject = \"PRJNA358009\" and tax_superkingdom = \"Archaea\"", "rows": [[2948954, "PRJNA358009_P_NODE_9183_length_187_cov_6.739130_g9114_i0", "PRJNA358009", "9183", "187", "6.73913", "12.6021731", "Thermoplasmata archaeon", "1906666", "Archaea", "Archaea", "91.6", "3.39e-14", "", "NTclustered", "gi|2108430933|gb|CP070629.1|", "1906666", "g9114", "i0", "88.158", "21.6256684491979", "76", "9", "41", "0", "11", "86", "286871", "286946", "MAG: Thermoplasmata archaeon isolate bin983 chromosome", "blastn", "4044", "91.6", "1", "Archaea", null, "Methanobacteriati", "Thermoplasmatota", "Thermoplasmata", null, null, null, "Thermoplasmata archaeon"], [15700786, "PRJNA358009_P_NODE_1113_length_364_cov_2.244444_g1052_i0", "PRJNA358009", "1113", "364", "2.244444", "8.16977616", "uncultured Methanomethylovorans sp.", "183759", "Archaea", "Archaea", "243", "1.91e-59", "", "NTclustered", "gi|2814788356|emb|OY782867.2|", "183759", "g1052", "i0", "99.254", "81.7967032967033", "134", "1", "62", "0", "4", "137", "340124", "340257", "MAG: uncultured Methanomethylovorans sp. isolate 1bea500b-d65c-4789-84bd-533d56c43360 genome assembly, chromosome: 1", "blastn", "29774", "243", "1", "Archaea", "Stenosarchaea group", "Methanobacteriati", "Methanobacteriota", "Methanomicrobia", "Methanosarcinales", "Methanosarcinaceae", "Methanomethylovorans", "uncultured Methanomethylovorans sp."], [16975542, "PRJNA358009_P_NODE_10714_length_178_cov_2.844961_g10645_i0", "PRJNA358009", "10714", "178", "2.844961", "5.06403058", "uncultured Methanomethylovorans sp.", "183759", "Archaea", "Archaea", "313", "6.259999999999999e-81", "", "NTclustered", "gi|2814788356|emb|OY782867.2|", "183759", "g10645", "i0", "99.419", "227.921348314607", "172", "1", "97", "0", "7", "178", "339821", "339650", "MAG: uncultured Methanomethylovorans sp. isolate 1bea500b-d65c-4789-84bd-533d56c43360 genome assembly, chromosome: 1", "blastn", "40570", "313", "1", "Archaea", "Stenosarchaea group", "Methanobacteriati", "Methanobacteriota", "Methanomicrobia", "Methanosarcinales", "Methanosarcinaceae", "Methanomethylovorans", "uncultured Methanomethylovorans sp."], [19524201, "PRJNA358009_P_NODE_9696_length_184_cov_4.755556_g9627_i0", "PRJNA358009", "9696", "184", "4.755556", "8.75022304", "uncultured Methanomethylovorans sp.", "183759", "Archaea", "Archaea", "305", "1.09e-78", "", "NTclustered", "gi|2814788356|emb|OY782867.2|", "183759", "g9627", "i0", "97.74", "71.9891304347826", "177", "4", "96", "0", "8", "184", "340789", "340613", "MAG: uncultured Methanomethylovorans sp. isolate 1bea500b-d65c-4789-84bd-533d56c43360 genome assembly, chromosome: 1", "blastn", "13246", "305", "1", "Archaea", "Stenosarchaea group", "Methanobacteriati", "Methanobacteriota", "Methanomicrobia", "Methanosarcinales", "Methanosarcinaceae", "Methanomethylovorans", "uncultured Methanomethylovorans sp."], [20198997, "PRJNA358009_P_NODE_1156_length_359_cov_3.132258_g1095_i0", "PRJNA358009", "1156", "359", "3.132258", "11.24480622", "root", "1", "Root_unresolved", "Root_unresolved", "385", "2.95e-102", "", "NTclustered", "gi|103488695|gb|DQ516748.1|", "2190", "g1095", "i0", "100", "2.55710306406685", "208", "0", "58", "0", "1", "208", "483", "276", "Methanocaldococcus jannaschii spike-in control MJ-500-31 genomic sequence", "blastn", "918", "385", "1", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanococci", "Methanococcales", "Methanocaldococcaceae", "Methanocaldococcus", "Methanocaldococcus jannaschii"], [25299220, "PRJNA358009_P_NODE_4220_length_327_cov_2.215827_g4157_i0", "PRJNA358009", "4220", "327", "2.215827", "7.24575429", "Halobacterium", "2239", "Archaea", "Archaea", "185", "2.91e-42", "", "NTclustered", "gi|255976512|emb|FN435862.1|", "115547", "g4157", "i0", "100", "47.9296636085627", "100", "0", "61", "0", "1", "100", "292", "391", "Uncultured archaeon partial 16S rRNA gene, clone 15", "blastn", "15673", "185", "1", "Archaea", null, null, null, null, null, null, null, "uncultured archaeon"], [26694891, "PRJNA358009_P_NODE_4761_length_327_cov_2.000000_g4698_i0", "PRJNA358009", "4761", "327", "2", "6.54", "Halocalculus aciditolerans", "1383812", "Archaea", "Archaea", "64.3", "2.57e-9", "", "NR", "WP_229774124.1", "1383812", "g4698", "i0", "90.6", "0.293577981651376", "32", "3", "29.4", "0", "325", "230", "534", "565", "WP_229774124.1 SIR2 family protein [Halocalculus aciditolerans]", "diamond", "96", "64.3", "1", "Archaea", "Stenosarchaea group", "Methanobacteriati", "Methanobacteriota", "Halobacteria", "Halobacteriales", "Halobacteriaceae", "Halocalculus", "Halocalculus aciditolerans"], [27408273, "PRJNA358009_P_NODE_11503_length_174_cov_1.224000_g11434_i0", "PRJNA358009", "11503", "174", "1.224", "2.12976", "root", "1", "Root_unresolved", "Root_unresolved", "115", "3.51e-28", "", "NR", "WP_068576323.1", "54262", "g11434", "i0", "96.5", "18.6724137931034", "57", "2", "98.3", "0", "2", "172", "310", "366", "WP_068576323.1 DNA polymerase [Thermococcus chitonophagus]", "diamond", "3249", "115", "1", "Archaea", null, "Methanobacteriati", "Methanobacteriota", "Thermococci", "Thermococcales", "Thermococcaceae", "Thermococcus", "Thermococcus chitonophagus"], [28906268, "PRJNA358009_P_NODE_6768_length_325_cov_4.065217_g6705_i0", "PRJNA358009", "6768", "325", "4.065217", "13.21195525", "Methanofastidiosum sp.", "2666341", "Archaea", "Archaea", "113", "3.4300000000000005e-27", "", "NR", "HQK63031.1", "2666341", "g6705", "i0", "59.6", "0.96", "104", "3", "96", "1", "317", "6", "7", "71", "HQK63031.1 transposase [Methanofastidiosum sp.]", "diamond", "312", "113", "1", "Archaea", "Stenosarchaea group", "Methanobacteriati", "Methanobacteriota", "Candidatus Methanofastidiosia", "Candidatus Methanofastidiosales", "Candidatus Methanofastidiosaceae", "Candidatus Methanofastidiosum", "Methanofastidiosum sp."], [29442983, "PRJNA358009_P_NODE_17890_length_154_cov_3.638095_g17821_i0", "PRJNA358009", "17890", "154", "3.638095", "5.6026663", "Candidatus Nanohaloarchaea archaeon", "2594798", "Archaea", "Archaea", "72.8", "2.78e-13", "", "NR", "MFB6203993.1", "2594798", "g17821", "i0", "73.9", "1.83116883116883", "46", "12", "89.6", "0", "7", "144", "115", "160", "MFB6203993.1 alkaline phosphatase family protein [Candidatus Nanohaloarchaea archaeon]", "diamond", "282", "72.8", "1", "Archaea", "Stenosarchaea group", "Methanobacteriati", "Methanobacteriota", "Candidatus Nanohaloarchaea", null, null, null, "Candidatus Nanohaloarchaea archaeon"], [29712574, "PRJNA358009_P_NODE_7750_length_224_cov_1.165714_g7681_i0", "PRJNA358009", "7750", "224", "1.165714", "2.61119936", "root", "1", "Root_unresolved", "Root_unresolved", "156", "3.64e-42", "", "NR", "WP_011248956.1", "311400", "g7681", "i0", "100", "2.97321428571429", "74", "0", "99.1", "0", "224", "3", "171", "244", "WP_011248956.1 DNA polymerase [Thermococcus kodakarensis]", "diamond", "666", "156", "1", "Archaea", null, "Methanobacteriati", "Methanobacteriota", "Thermococci", "Thermococcales", "Thermococcaceae", "Thermococcus", "Thermococcus kodakarensis"], [32083474, "PRJNA358009_P_NODE_14958_length_163_cov_4.026316_g14889_i0", "PRJNA358009", "14958", "163", "4.026316", "6.56289508", "Halanaeroarchaeum", "1656823", "Archaea", "Archaea", "71.2", "7.71e-14", "", "NR", "MFB6082319.1", "1963275", "g14889", "i0", "62.5", "1.85889570552147", "48", "18", "88.3", "0", "20", "163", "34", "81", "MFB6082319.1 PH domain-containing protein [Halanaeroarchaeum sp.]", "diamond", "303", "71.2", "1", "Archaea", "Stenosarchaea group", "Methanobacteriati", "Methanobacteriota", "Halobacteria", "Halobacteriales", "Halobacteriaceae", "Halanaeroarchaeum", "Halanaeroarchaeum sp."]], "truncated": false, "filtered_table_rows_count": 12, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"bioproject\" = :p0 and \"tax_superkingdom\" = :p1 order by rowid limit 101", "params": {"p0": "PRJNA358009", "p1": "Archaea"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_superkingdom=Archaea", "results": [{"value": "PRJNA358009", "label": "PRJNA358009", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_superkingdom=Archaea", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_superkingdom=Archaea", "results": [{"value": "blastn", "label": "blastn", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_superkingdom=Archaea&analysis=blastn", "selected": false}, {"value": "diamond", "label": "diamond", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_superkingdom=Archaea&analysis=diamond", "selected": false}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_superkingdom=Archaea", "results": [{"value": "Archaea", "label": "Archaea", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA358009", "selected": true}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_superkingdom=Archaea", "results": [{"value": "Stenosarchaea group", "label": "Stenosarchaea group", "count": 7, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_superkingdom=Archaea&tax_clade=Stenosarchaea+group", "selected": false}, {"value": "Methanomada group", "label": "Methanomada group", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_superkingdom=Archaea&tax_clade=Methanomada+group", "selected": false}], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_superkingdom=Archaea", "results": [{"value": "Methanobacteriati", "label": "Methanobacteriati", "count": 11, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_superkingdom=Archaea&tax_kingdom=Methanobacteriati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_superkingdom=Archaea", "results": [{"value": "Methanobacteriota", "label": "Methanobacteriota", "count": 10, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_superkingdom=Archaea&tax_phylum=Methanobacteriota", "selected": false}, {"value": "Thermoplasmatota", "label": "Thermoplasmatota", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_superkingdom=Archaea&tax_phylum=Thermoplasmatota", "selected": false}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 198.3897700010857}