{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where bioproject = \"PRJNA358009\", tax_kingdom = \"Pseudomonadati\" and tax_phylum = \"Spirochaetota\"", "rows": [[1073121, "PRJNA358009_P_NODE_9501_length_185_cov_8.029412_g9432_i0", "PRJNA358009", "9501", "185", "8.029412", "14.8544122", "Gracilinema", "2951106", "Bacteria", "Bacteria", "228", "2.4499999999999995e-55", "", "NTclustered", "gi|470488994|ref|NR_076899.1|", "215591", "g9432", "i0", "89.503", "115.183783783784", "181", "18", "97", "1", "4", "183", "389", "209", "Treponema caldarium strain H1 23S ribosomal RNA, complete sequence", "blastn", "21309", "228", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Breznakiellaceae", "Gracilinema", "Gracilinema caldarium"], [2348464, "PRJNA358009_P_NODE_9422_length_186_cov_2.751825_g9353_i0", "PRJNA358009", "9422", "186", "2.751825", "5.1183945", "Treponema", "157", "Bacteria", "Bacteria", "291", "3.1e-74", "", "NTclustered", "gi|470488561|ref|NR_076878.1|", "81028", "g9353", "i0", "94.709", "172.360215053763", "189", "6", "100", "3", "1", "186", "1687", "1874", "Treponema brennaborense strain DD5/3 23S ribosomal RNA gene, complete sequence", "blastn", "32059", "291", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema brennaborense"], [2948937, "PRJNA358009_P_NODE_7123_length_277_cov_16.421053_g7056_i0", "PRJNA358009", "7123", "277", "16.421053", "45.48631681", "Treponema sp.", "166", "Bacteria", "Bacteria", "141", "5.29e-29", "", "NTclustered", "gi|2189480979|gb|CP091737.1|", "166", "g7056", "i0", "80.526", "128.353790613718", "190", "32", "69", "5", "87", "276", "1476607", "1476423", "MAG: Treponema sp. isolate nC27_bin.160.fa chromosome", "blastn", "35554", "141", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema sp."], [4900919, "PRJNA358009_P_NODE_1964_length_330_cov_11.384342_g1901_i0", "PRJNA358009", "1964", "330", "11.384342", "37.5683286", "Treponema", "157", "Bacteria", "Bacteria", "147", "1.39e-30", "", "NTclustered", "gi|2265136109|gb|CP051197.1|", "69710", "g1901", "i0", "86.567", "11.7121212121212", "134", "17", "40", "1", "190", "322", "324741", "324608", "Treponema vincentii strain OMZ 802 chromosome, complete genome", "blastn", "3865", "147", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema vincentii"], [8725628, "PRJNA358009_P_NODE_17107_length_157_cov_13.379630_g17038_i0", "PRJNA358009", "17107", "157", "13.37963", "21.0060191", "Gracilinema", "2951106", "Bacteria", "Bacteria", "230", "5.58e-56", "", "NTclustered", "gi|470488994|ref|NR_076899.1|", "215591", "g17038", "i0", "94.595", "144.229299363057", "148", "8", "94", "0", "2", "149", "2912", "2765", "Treponema caldarium strain H1 23S ribosomal RNA, complete sequence", "blastn", "22644", "230", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Breznakiellaceae", "Gracilinema", "Gracilinema caldarium"], [8725700, "PRJNA358009_P_NODE_5947_length_327_cov_1.589928_g5884_i0", "PRJNA358009", "5947", "327", "1.589928", "5.19906456", "Treponema", "157", "Bacteria", "Bacteria", "172", "2.26e-38", "", "NTclustered", "gi|1996291085|gb|CP027017.1|", "58231", "g5884", "i0", "100", "79.4403669724771", "93", "0", "59", "0", "228", "320", "1013963", "1013871", "Treponema medium strain T19 chromosome, complete genome", "blastn", "25977", "172", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema medium"], [10602090, "PRJNA358009_P_NODE_7029_length_291_cov_28.115702_g6962_i0", "PRJNA358009", "7029", "291", "28.115702", "81.81669282", "Breznakiella homolactica", "2798577", "Bacteria", "Bacteria", "368", "2.36e-97", "", "NTclustered", "gi|2093987262|gb|CP067089.2|", "2798577", "g6962", "i0", "91.45", "163.584192439863", "269", "21", "92", "2", "24", "291", "9298", "9031", "Breznakiella homolactica strain RmG30 chromosome, complete genome", "blastn", "47603", "368", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Breznakiellaceae", "Breznakiella", "Breznakiella homolactica"], [11877007, "PRJNA358009_P_NODE_7790_length_221_cov_6.005814_g7721_i0", "PRJNA358009", "7790", "221", "6.005814", "13.27284894", "Sphaerochaeta pleomorpha", "1131707", "Bacteria", "Bacteria", "379", "7.909999999999998e-101", "", "NTclustered", "gi|359350094|gb|CP003155.1|", "158190", "g7721", "i0", "98.598", "241.366515837104", "214", "3", "97", "0", "8", "221", "2305363", "2305576", "Sphaerochaeta pleomorpha str. Grapes, complete genome", "blastn", "53342", "379", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Sphaerochaetaceae", "Sphaerochaeta", "Sphaerochaeta pleomorpha"], [12551434, "PRJNA358009_P_NODE_1050_length_370_cov_19.040498_g989_i0", "PRJNA358009", "1050", "370", "19.040498", "70.4498426", "Gracilinema", "2951106", "Bacteria", "Bacteria", "409", "1.81e-109", "", "NTclustered", "gi|470488994|ref|NR_076899.1|", "215591", "g989", "i0", "87.088", "200.210810810811", "364", "44", "98", "2", "1", "363", "2504", "2143", "Treponema caldarium strain H1 23S ribosomal RNA, complete sequence", "blastn", "74078", "409", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Breznakiellaceae", "Gracilinema", "Gracilinema caldarium"], [12551448, "PRJNA358009_P_NODE_11410_length_174_cov_3.456000_g11341_i0", "PRJNA358009", "11410", "174", "3.456", "6.01344", "Gracilinema", "2951106", "Bacteria", "Bacteria", "211", "2.28e-50", "", "NTclustered", "gi|470488994|ref|NR_076899.1|", "215591", "g11341", "i0", "89.759", "3.81609195402299", "166", "16", "95", "1", "7", "172", "699", "863", "Treponema caldarium strain H1 23S ribosomal RNA, complete sequence", "blastn", "664", "211", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Breznakiellaceae", "Gracilinema", "Gracilinema caldarium"], [29032998, "PRJNA358009_P_NODE_9828_length_183_cov_5.574627_g9759_i0", "PRJNA358009", "9828", "183", "5.5746270000000004", "10.20156741", "Spirochaetes bacterium GWB1_59_5", "1802176", "Bacteria", "Bacteria", "95.5", "4.8e-24", "", "NR", "OHD15025.1", "1802176", "g9759", "i0", "92.3", "0.852459016393443", "52", "4", "85.2", "0", "3", "158", "13", "64", "OHD15025.1 MAG: hypothetical protein A2Y38_25765 [Spirochaetes bacterium GWB1_59_5]", "diamond", "156", "95.5", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", null, null, null, null, "Spirochaetes bacterium GWB1_59_5"], [29159259, "PRJNA358009_P_NODE_3549_length_327_cov_2.582734_g3486_i0", "PRJNA358009", "3549", "327", "2.582734", "8.44554018", "Rectinema sp.", "1937017", "Bacteria", "Bacteria", "67", "1.97e-11", "", "NR", "MEN6296780.1", "1937017", "g3486", "i0", "96.9", "0.293577981651376", "32", "1", "29.4", "0", "97", "2", "104", "135", "MEN6296780.1 Hsp20/alpha crystallin family protein [Rectinema sp.]", "diamond", "96", "67", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Rectinemataceae", "Rectinema", "Rectinema sp."], [29222394, "PRJNA358009_P_NODE_3029_length_327_cov_3.000000_g2966_i0", "PRJNA358009", "3029", "327", "3", "9.81", "Spirochaetota bacterium", "2202144", "Bacteria", "Bacteria", "81.3", "3.24e-15", "", "NR", "HOJ62950.1", "2202144", "g2966", "i0", "43.9", "0.981651376146789", "107", "15", "98.2", "2", "327", "7", "1489", "1550", "HOJ62950.1 Ig-like domain-containing protein [Spirochaetota bacterium]", "diamond", "321", "81.3", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", null, null, null, null, "Spirochaetota bacterium"], [31243857, "PRJNA358009_P_NODE_16075_length_161_cov_3.526786_g16006_i0", "PRJNA358009", "16075", "161", "3.526786", "5.67812546", "Spirochaetes bacterium GWB1_59_5", "1802176", "Bacteria", "Bacteria", "84.7", "1.95e-17", "", "NR", "OHD15058.1", "1802176", "g16006", "i0", "80.4", "1.90062111801242", "51", "10", "95", "0", "154", "2", "1180", "1230", "OHD15058.1 MAG: hypothetical protein A2Y38_25950 [Spirochaetes bacterium GWB1_59_5]", "diamond", "306", "84.7", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", null, null, null, null, "Spirochaetes bacterium GWB1_59_5"], [32400064, "PRJNA358009_P_NODE_13919_length_165_cov_2.241379_g13850_i0", "PRJNA358009", "13919", "165", "2.241379", "3.69827535", "Pseudomonadati", "3379134", "Bacteria", "Bacteria", "44.7", "0.0013", "", "NR", "MAI26614.1", "28185", "g13850", "i0", "78.3", "1.2", "23", "5", "41.8", "0", "97", "165", "2", "24", "MAI26614.1 deoxycytidylate deaminase [Spirochaeta sp.]", "diamond", "198", "44.7", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Spirochaetaceae", "Spirochaeta", "Spirochaeta sp."]], "truncated": false, "filtered_table_rows_count": 15, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"bioproject\" = :p0 and \"tax_kingdom\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "PRJNA358009", "p1": "Pseudomonadati", "p2": "Spirochaetota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota", "results": [{"value": "PRJNA358009", "label": "PRJNA358009", "count": 15, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota", "results": [{"value": "blastn", "label": "blastn", "count": 10, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota&analysis=blastn", "selected": false}, {"value": "diamond", "label": "diamond", "count": 5, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota&analysis=diamond", "selected": false}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 15, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 15, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_phylum=Spirochaetota", "selected": true}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota", "results": [{"value": "Spirochaetota", "label": "Spirochaetota", "count": 15, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA358009&tax_kingdom=Pseudomonadati", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 543.0973980110139}