{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where bioproject = \"PRJNA312615\" and tax_phylum = \"Campylobacterota\"", "rows": [[13817666, "PRJNA312615_P_NODE_8871_length_414_cov_2.306849_g8721_i0", "PRJNA312615", "8871", "414", "2.306849", "9.55035486", "Pseudomonadati", "3379134", "Bacteria", "Bacteria", "765", "0", "", "NTclustered", "gi|972494020|gb|CP010483.1|", "197", "g8721", "i0", "100", "81.8864734299517", "414", "0", "100", "0", "1", "414", "1633570", "1633157", "Campylobacter jejuni strain CJ677CC535, complete genome", "blastn", "33901", "765", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter jejuni"], [18229366, "PRJNA312615_P_NODE_10115_length_389_cov_10.558824_g9965_i0", "PRJNA312615", "10115", "389", "10.558824", "41.07382536", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "66.6", "3.3e-11", "", "NR", "GAA6899797.1", "210", "g9965", "i0", "64.8", "0.416452442159383", "54", "19", "41.6", "0", "2", "163", "64", "117", "GAA6899797.1 hypothetical protein Kyoto207A_1280 [Helicobacter pylori]", "diamond", "162", "66.6", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [28558747, "PRJNA312615_P_NODE_50767_length_168_cov_0.857143_g50616_i0", "PRJNA312615", "50767", "168", "0.857143", "1.44000024", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "48.9", "1.69e-5", "", "NR", "GAA8778224.1", "210", "g50616", "i0", "62.5", "1.26785714285714", "40", "15", "71.4", "0", "158", "39", "41", "80", "GAA8778224.1 hypothetical protein BTM122_15710 [Helicobacter pylori]", "diamond", "213", "48.9", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [28937570, "PRJNA312615_P_NODE_21568_length_262_cov_2.469484_g21417_i0", "PRJNA312615", "21568", "262", "2.469484", "6.47004808", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "44.3", "9e-4", "", "NR", "GAA6795260.1", "210", "g21417", "i0", "79.2", "0.274809160305344", "24", "5", "27.5", "0", "168", "239", "12", "35", "GAA6795260.1 hypothetical protein Kyoto200A_0190 [Helicobacter pylori]", "diamond", "72", "44.3", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [29631799, "PRJNA312615_P_NODE_37810_length_200_cov_0.801325_g37659_i0", "PRJNA312615", "37810", "200", "0.801325", "1.60265", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "41.6", "0.00765", "", "NR", "GAA8688029.1", "210", "g37659", "i0", "65.7", "0.525", "35", "10", "49.5", "1", "154", "56", "1", "35", "GAA8688029.1 hypothetical protein Kyoto145A_1790 [Helicobacter pylori]", "diamond", "105", "41.6", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [30042630, "PRJNA312615_P_NODE_31231_length_219_cov_1.082353_g31080_i0", "PRJNA312615", "31231", "219", "1.082353", "2.37035307", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "51.2", "2.26e-6", "", "NR", "GAA6981306.1", "210", "g31080", "i0", "46.7", "0.821917808219178", "60", "32", "82.2", "0", "1", "180", "4", "63", "GAA6981306.1 hypothetical protein Kyoto211A_3600 [Helicobacter pylori]", "diamond", "180", "51.2", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [30168843, "PRJNA312615_P_NODE_46132_length_179_cov_0.946154_g45981_i0", "PRJNA312615", "46132", "179", "0.946154", "1.69361566", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "44.7", "2.24e-4", "", "NR", "GAA6795719.1", "210", "g45981", "i0", "53.1", "0.536312849162011", "32", "15", "53.6", "0", "84", "179", "1", "32", "GAA6795719.1 hypothetical protein Kyoto200A_0590 [Helicobacter pylori]", "diamond", "96", "44.7", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [30913465, "PRJNA312615_P_NODE_57094_length_163_cov_0.868421_g56943_i0", "PRJNA312615", "57094", "163", "0.868421", "1.41552623", "Pseudomonadati", "3379134", "Bacteria", "Bacteria", "50.1", "1.29e-6", "", "NR", "GAA8908969.1", "210", "g56943", "i0", "65.7", "1.84049079754601", "35", "12", "64.4", "0", "156", "52", "8", "42", "GAA8908969.1 hypothetical protein Kyoto166A_1580 [Helicobacter pylori]", "diamond", "300", "50.1", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [31022165, "PRJNA312615_P_NODE_1675_length_824_cov_3.054194_g1560_i0", "PRJNA312615", "1675", "824", "3.054194", "25.16655856", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "78.2", "3.5e-14", "", "NR", "GAA6899797.1", "210", "g1560", "i0", "55.7", "0.254854368932039", "70", "31", "25.5", "0", "319", "528", "27", "96", "GAA6899797.1 hypothetical protein Kyoto207A_1280 [Helicobacter pylori]", "diamond", "210", "78.2", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [31179783, "PRJNA312615_P_NODE_39175_length_196_cov_1.231293_g39024_i0", "PRJNA312615", "39175", "196", "1.231293", "2.41333428", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "53.9", "2.79e-7", "", "NR", "GAA9037147.1", "210", "g39024", "i0", "65.9", "2.02040816326531", "44", "15", "67.3", "0", "196", "65", "8", "51", "GAA9037147.1 hypothetical protein Kyoto184A_00210 [Helicobacter pylori]", "diamond", "396", "53.9", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [31243286, "PRJNA312615_P_NODE_54555_length_165_cov_0.862069_g54404_i0", "PRJNA312615", "54555", "165", "0.862069", "1.42241385", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "39.7", "0.0473", "", "NR", "GAA9125671.1", "210", "g54404", "i0", "70.8", "0.436363636363636", "24", "7", "43.6", "0", "8", "79", "17", "40", "GAA9125671.1 hypothetical protein Kyoto190A_0950 [Helicobacter pylori]", "diamond", "72", "39.7", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [31370095, "PRJNA312615_P_NODE_29896_length_224_cov_0.874286_g29745_i0", "PRJNA312615", "29896", "224", "0.874286", "1.95840064", "Campylobacter jejuni", "197", "Bacteria", "Bacteria", "75.5", "5.9e-16", "", "NR", "WP_214283297.1", "197", "g29745", "i0", "73.5", "0.65625", "49", "13", "65.6", "0", "3", "149", "21", "69", "WP_214283297.1 hypothetical protein, partial [Campylobacter jejuni]", "diamond", "147", "75.5", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter jejuni"], [31766909, "PRJNA312615_P_NODE_14317_length_325_cov_1.108696_g14166_i0", "PRJNA312615", "14317", "325", "1.108696", "3.603262", "Bacteria", "2", "Bacteria", "Bacteria", "132", "1.89e-35", "", "NR", "WP_227574815.1", "195", "g14166", "i0", "61.3", "23.4461538461538", "106", "41", "97.8", "0", "8", "325", "98", "203", "WP_227574815.1 AAA family ATPase, partial [Campylobacter coli]", "diamond", "7620", "132", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter coli"], [31907551, "PRJNA312615_P_NODE_25377_length_243_cov_0.969072_g25226_i0", "PRJNA312615", "25377", "243", "0.969072", "2.35484496", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "44.7", "8.24e-4", "", "NR", "GAA8685368.1", "210", "g25226", "i0", "42.4", "0.728395061728395", "59", "34", "72.8", "0", "187", "11", "11", "69", "GAA8685368.1 hypothetical protein Kyoto145A_1250 [Helicobacter pylori]", "diamond", "177", "44.7", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [31939095, "PRJNA312615_P_NODE_54357_length_165_cov_0.879310_g54206_i0", "PRJNA312615", "54357", "165", "0.87931", "1.4508615", "Campylobacter jejuni", "197", "Bacteria", "Bacteria", "65.5", "2.19e-12", "", "NR", "MDN2757921.1", "197", "g54206", "i0", "71.4", "0.890909090909091", "49", "13", "87.3", "1", "22", "165", "1", "49", "MDN2757921.1 hypothetical protein [Campylobacter jejuni]", "diamond", "147", "65.5", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter jejuni"], [32256015, "PRJNA312615_P_NODE_4398_length_567_cov_3.816602_g4255_i0", "PRJNA312615", "4398", "567", "3.816602", "21.64013334", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "94", "4.46e-21", "", "NR", "GAA6899797.1", "210", "g4255", "i0", "57.3", "0.470899470899471", "89", "38", "47.1", "0", "75", "341", "27", "115", "GAA6899797.1 hypothetical protein Kyoto207A_1280 [Helicobacter pylori]", "diamond", "267", "94", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [32382231, "PRJNA312615_P_NODE_18699_length_282_cov_1.489270_g18548_i0", "PRJNA312615", "18699", "282", "1.48927", "4.1997414", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "101", "2.36e-24", "", "NR", "GAB0054170.1", "210", "g18548", "i0", "57", "8.23404255319149", "86", "37", "91.5", "0", "1", "258", "32", "117", "GAB0054170.1 hypothetical protein YGH029_14930 [Helicobacter pylori]", "diamond", "2322", "102", "0.990196078431373", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"]], "truncated": false, "filtered_table_rows_count": 17, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"bioproject\" = :p0 and \"tax_phylum\" = :p1 order by rowid limit 101", "params": {"p0": "PRJNA312615", "p1": "Campylobacterota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA312615&tax_phylum=Campylobacterota", "results": [{"value": "PRJNA312615", "label": "PRJNA312615", "count": 17, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA312615&tax_phylum=Campylobacterota", "results": [{"value": "diamond", "label": "diamond", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA312615&tax_phylum=Campylobacterota&analysis=diamond", "selected": false}, {"value": "blastn", "label": "blastn", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA312615&tax_phylum=Campylobacterota&analysis=blastn", "selected": false}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA312615&tax_phylum=Campylobacterota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 17, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA312615&tax_phylum=Campylobacterota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA312615&tax_phylum=Campylobacterota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA312615&tax_phylum=Campylobacterota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 17, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA312615&tax_phylum=Campylobacterota&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA312615&tax_phylum=Campylobacterota", "results": [{"value": "Campylobacterota", "label": "Campylobacterota", "count": 17, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA312615", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 363.1475989968749}