{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where bioproject = \"PRJNA1237888\", tax_kingdom = \"Pseudomonadati\" and tax_phylum = \"Nitrospirota\"", "rows": [[2897519, "PRJNA1237888_S_NODE_5423_length_177_cov_3.296875_g5373_i0", "PRJNA1237888", "5423", "177", "3.296875", "5.83546875", "Nitrospira sp.", "70125", "Bacteria", "Bacteria", "322", "1.03e-83", "", "NTclustered", "gi|2511635996|gb|CP126122.1|", "70125", "g5373", "i0", "99.435", "27.9322033898305", "177", "1", "100", "0", "1", "177", "752498", "752322", "MAG: Nitrospira sp. isolate bin_005 chromosome", "blastn", "4944", "322", "1", "Bacteria", null, "Pseudomonadati", "Nitrospirota", "Nitrospiria", "Nitrospirales", "Nitrospiraceae", "Nitrospira", "Nitrospira sp."], [10550708, "PRJNA1237888_S_NODE_3609_length_214_cov_2.787879_g3559_i0", "PRJNA1237888", "3609", "214", "2.787879", "5.96606106", "Nitrospira defluvii", "330214", "Bacteria", "Bacteria", "379", "7.609999999999999e-101", "", "NTclustered", "gi|470491451|ref|NR_077039.1|", "330214", "g3559", "i0", "98.598", "24.1214953271028", "214", "3", "100", "0", "1", "214", "1426", "1639", "Candidatus Nitrospira defluvii 23S ribosomal RNA, complete sequence", "blastn", "5162", "379", "1", "Bacteria", null, "Pseudomonadati", "Nitrospirota", "Nitrospiria", "Nitrospirales", "Nitrospiraceae", "Nitrospira", "Nitrospira defluvii"], [15077367, "PRJNA1237888_S_NODE_4532_length_193_cov_1.513889_g4482_i0", "PRJNA1237888", "4532", "193", "1.513889", "2.92180577", "Nitrospira", "1234", "Bacteria", "Bacteria", "307", "3.2200000000000003e-79", "", "NTclustered", "gi|2863125063|dbj|AP038805.1|", "70125", "g4482", "i0", "95.337", "227.20207253886", "193", "9", "100", "0", "1", "193", "2095346", "2095154", "MAG: Nitrospira sp. AFB01 DNA, complete genome", "blastn", "43850", "307", "1", "Bacteria", null, "Pseudomonadati", "Nitrospirota", "Nitrospiria", "Nitrospirales", "Nitrospiraceae", "Nitrospira", "Nitrospira sp."], [15077371, "PRJNA1237888_S_NODE_5352_length_178_cov_3.782946_g5302_i0", "PRJNA1237888", "5352", "178", "3.782946", "6.73364388", "Nitrospira", "1234", "Bacteria", "Bacteria", "289", "1.05e-73", "", "NTclustered", "gi|2511635996|gb|CP126122.1|", "70125", "g5302", "i0", "96.045", "35.6123595505618", "177", "7", "99", "0", "1", "177", "751411", "751587", "MAG: Nitrospira sp. isolate bin_005 chromosome", "blastn", "6339", "289", "1", "Bacteria", null, "Pseudomonadati", "Nitrospirota", "Nitrospiria", "Nitrospirales", "Nitrospiraceae", "Nitrospira", "Nitrospira sp."], [17627559, "PRJNA1237888_S_NODE_4094_length_202_cov_2.764706_g4044_i0", "PRJNA1237888", "4094", "202", "2.764706", "5.58470612", "Nitrospira", "1234", "Bacteria", "Bacteria", "333", "5.609999999999999e-87", "", "NTclustered", "gi|2194436381|gb|CP092080.1|", "70125", "g4044", "i0", "96.517", "236.336633663366", "201", "7", "99", "0", "2", "202", "1558967", "1558767", "MAG: Nitrospira sp. isolate UBC1 chromosome", "blastn", "47740", "333", "1", "Bacteria", null, "Pseudomonadati", "Nitrospirota", "Nitrospiria", "Nitrospirales", "Nitrospiraceae", "Nitrospira", "Nitrospira sp."], [20748187, "PRJNA1237888_S_NODE_6997_length_164_cov_0.904348_g6947_i0", "PRJNA1237888", "6997", "164", "0.904348", "1.48313072", "Nitrospira sp.", "70125", "Bacteria", "Bacteria", "281", "1.6000000000000001e-71", "", "NTclustered", "gi|2290907019|gb|CP060499.1|", "70125", "g6947", "i0", "97.561", "194.341463414634", "164", "4", "100", "0", "1", "164", "2683411", "2683248", "MAG: Nitrospira sp. isolate DH1 chromosome, complete genome", "blastn", "31872", "281", "1", "Bacteria", null, "Pseudomonadati", "Nitrospirota", "Nitrospiria", "Nitrospirales", "Nitrospiraceae", "Nitrospira", "Nitrospira sp."], [23299089, "PRJNA1237888_S_NODE_4059_length_203_cov_1.629870_g4009_i0", "PRJNA1237888", "4059", "203", "1.62987", "3.3086361", "Nitrospira defluvii", "330214", "Bacteria", "Bacteria", "370", "4.3e-98", "", "NTclustered", "gi|470491451|ref|NR_077039.1|", "330214", "g4009", "i0", "99.507", "95.3300492610837", "203", "1", "100", "0", "1", "203", "87", "289", "Candidatus Nitrospira defluvii 23S ribosomal RNA, complete sequence", "blastn", "19352", "370", "1", "Bacteria", null, "Pseudomonadati", "Nitrospirota", "Nitrospiria", "Nitrospirales", "Nitrospiraceae", "Nitrospira", "Nitrospira defluvii"]], "truncated": false, "filtered_table_rows_count": 7, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"bioproject\" = :p0 and \"tax_kingdom\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "PRJNA1237888", "p1": "Pseudomonadati", "p2": "Nitrospirota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1237888&tax_kingdom=Pseudomonadati&tax_phylum=Nitrospirota", "results": [{"value": "PRJNA1237888", "label": "PRJNA1237888", "count": 7, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_kingdom=Pseudomonadati&tax_phylum=Nitrospirota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1237888&tax_kingdom=Pseudomonadati&tax_phylum=Nitrospirota", "results": [{"value": "blastn", "label": "blastn", "count": 7, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1237888&tax_kingdom=Pseudomonadati&tax_phylum=Nitrospirota&analysis=blastn", "selected": false}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1237888&tax_kingdom=Pseudomonadati&tax_phylum=Nitrospirota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 7, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1237888&tax_kingdom=Pseudomonadati&tax_phylum=Nitrospirota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1237888&tax_kingdom=Pseudomonadati&tax_phylum=Nitrospirota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1237888&tax_kingdom=Pseudomonadati&tax_phylum=Nitrospirota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 7, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1237888&tax_phylum=Nitrospirota", "selected": true}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1237888&tax_kingdom=Pseudomonadati&tax_phylum=Nitrospirota", "results": [{"value": "Nitrospirota", "label": "Nitrospirota", "count": 7, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1237888&tax_kingdom=Pseudomonadati", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 235.25010899174958}