{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where bioproject = \"PRJNA1144090\", tax_kingdom = \"Pseudomonadati\" and tax_phylum = \"Campylobacterota\"", "rows": [[1561700, "PRJNA1144090_P_NODE_19382_length_618_cov_394.095413_g18858_i0", "PRJNA1144090", "19382", "618", "394.095413", "2435.50965234", "Arcobacter iocasae", "2906515", "Bacteria", "Bacteria", "54.7", "0.017", "", "NTclustered", "gi|2809047151|gb|CP090177.1|", "2906515", "g18858", "i0", "100", "0.0469255663430421", "29", "0", "5", "0", "96", "124", "1017122", "1017150", "Arcobacter sp. KX21116 chromosome, complete genome", "blastn", "29", "54.7", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Arcobacteraceae", "Arcobacter", "Arcobacter iocasae"], [1562425, "PRJNA1144090_P_NODE_85242_length_272_cov_3.773869_g84707_i0", "PRJNA1144090", "85242", "272", "3.773869", "10.26492368", "Malaciobacter canalis", "1912871", "Bacteria", "Bacteria", "54.7", "0.007", "", "NTclustered", "gi|2851193446|gb|CP085223.1|", "1912871", "g84707", "i0", "100", "0.341911764705882", "29", "0", "11", "0", "173", "201", "2090370", "2090398", "Malaciobacter canalis strain ADH2-947 chromosome, complete genome", "blastn", "93", "54.7", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Arcobacteraceae", "Malaciobacter", "Malaciobacter canalis"], [5390030, "PRJNA1144090_P_NODE_104165_length_248_cov_0.880000_g103630_i0", "PRJNA1144090", "104165", "248", "0.88", "2.1824", "Campylobacter concisus", "199", "Bacteria", "Bacteria", "442", "1.1399999999999995e-119", "", "NTclustered", "gi|1938728373|gb|CP049272.1|", "199", "g103630", "i0", "98.79", "7.01209677419355", "248", "3", "100", "0", "1", "248", "633959", "633712", "Campylobacter concisus strain P27CDO-S2 chromosome, complete genome", "blastn", "1739", "442", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter concisus"], [6135885, "PRJNA1144090_P_NODE_68825_length_305_cov_1.818966_g68290_i0", "PRJNA1144090", "68825", "305", "1.818966", "5.5478463", "Campylobacter", "194", "Bacteria", "Bacteria", "54.7", "0.008", "", "NTclustered", "gi|1940031893|gb|CP065357.1|", "1813019", "g68290", "i0", "100", "0.852459016393443", "29", "0", "10", "0", "272", "300", "233094", "233066", "Campylobacter hepaticus strain UF2019SK1 chromosome, complete genome", "blastn", "260", "54.7", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter hepaticus"], [8686079, "PRJNA1144090_P_NODE_117587_length_238_cov_2.333333_g117052_i0", "PRJNA1144090", "117587", "238", "2.333333", "5.55333254", "Aliarcobacter", "2321111", "Bacteria", "Bacteria", "438", "1.4e-118", "", "NTclustered", "gi|1231709647|emb|LT906455.1|", "28197", "g117052", "i0", "100", "423.218487394958", "237", "0", "99", "0", "1", "237", "852321", "852557", "Arcobacter butzleri strain NCTC12481 genome assembly, chromosome: 1", "blastn", "100726", "438", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Arcobacteraceae", "Aliarcobacter", "Aliarcobacter butzleri"], [12511742, "PRJNA1144090_P_NODE_82570_length_277_cov_1.509804_g82035_i0", "PRJNA1144090", "82570", "277", "1.509804", "4.18215708", "Arcobacteraceae", "2808963", "Bacteria", "Bacteria", "512", "9.73e-141", "", "NTclustered", "gi|1231709647|emb|LT906455.1|", "28197", "g82035", "i0", "100", "384.361010830325", "277", "0", "100", "0", "1", "277", "851949", "851673", "Arcobacter butzleri strain NCTC12481 genome assembly, chromosome: 1", "blastn", "106468", "512", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Arcobacteraceae", "Aliarcobacter", "Aliarcobacter butzleri"], [15060710, "PRJNA1144090_P_NODE_40052_length_408_cov_1.367164_g39517_i0", "PRJNA1144090", "40052", "408", "1.367164", "5.57802912", "Aliarcobacter", "2321111", "Bacteria", "Bacteria", "54.7", "0.011", "", "NTclustered", "gi|1231709647|emb|LT906455.1|", "28197", "g39517", "i0", "100", "0.142156862745098", "29", "0", "7", "0", "5", "33", "1821349", "1821377", "Arcobacter butzleri strain NCTC12481 genome assembly, chromosome: 1", "blastn", "58", "54.7", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Arcobacteraceae", "Aliarcobacter", "Aliarcobacter butzleri"], [22709894, "PRJNA1144090_P_NODE_33638_length_450_cov_1.599469_g33103_i0", "PRJNA1144090", "33638", "450", "1.599469", "7.1976105", "Aliarcobacter", "2321111", "Bacteria", "Bacteria", "832", "0", "", "NTclustered", "gi|1231709647|emb|LT906455.1|", "28197", "g33103", "i0", "100", "379.686666666667", "450", "0", "100", "0", "1", "450", "851573", "851124", "Arcobacter butzleri strain NCTC12481 genome assembly, chromosome: 1", "blastn", "170859", "832", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Arcobacteraceae", "Aliarcobacter", "Aliarcobacter butzleri"], [23240065, "PRJNA1144090_P_NODE_79019_length_283_cov_3.233333_g78484_i0", "PRJNA1144090", "79019", "283", "3.233333", "9.15033239", "Arcobacter peruensis", "2320140", "Bacteria", "Bacteria", "52.8", "0.026", "", "NTclustered", "gi|1509188976|gb|CP032363.1|", "2320140", "g78484", "i0", "100", "0.0989399293286219", "28", "0", "10", "0", "188", "215", "1851250", "1851277", "Arcobacter peruensis strain PSE-93 chromosome", "blastn", "28", "52.8", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Arcobacteraceae", "Arcobacter", "Arcobacter peruensis"], [23985332, "PRJNA1144090_P_NODE_83439_length_275_cov_3.811881_g82904_i0", "PRJNA1144090", "83439", "275", "3.811881", "10.48267275", "Aliarcobacter", "2321111", "Bacteria", "Bacteria", "503", "5.809999999999998e-138", "", "NTclustered", "gi|1231709647|emb|LT906455.1|", "28197", "g82904", "i0", "100", "400.472727272727", "272", "0", "100", "0", "1", "272", "849691", "849962", "Arcobacter butzleri strain NCTC12481 genome assembly, chromosome: 1", "blastn", "110130", "503", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Arcobacteraceae", "Aliarcobacter", "Aliarcobacter butzleri"], [26901415, "PRJNA1144090_P_NODE_92621_length_260_cov_2.614973_g92086_i0", "PRJNA1144090", "92621", "260", "2.614973", "6.7989298", "Pseudomonadati", "3379134", "Bacteria", "Bacteria", "52.8", "1.26e-5", "", "NR", "WP_300827129.1", "209", "g92086", "i0", "53.8", "6.04615384615385", "65", "22", "72.7", "2", "6", "194", "155", "213", "WP_300827129.1 MULTISPECIES: hypothetical protein [Helicobacter]", "diamond", "1572", "52.8", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", null], [27070460, "PRJNA1144090_P_NODE_5022_length_1272_cov_2.276063_g4738_i0", "PRJNA1144090", "5022", "1272", "2.276063", "28.95152136", "Campylobacterota bacterium", "2026809", "Bacteria", "Bacteria", "52", "0.00215", "", "NR", "MEA2027678.1", "2026809", "g4738", "i0", "31.5", "0.474056603773585", "111", "68", "24.5", "3", "959", "1270", "18", "127", "MEA2027678.1 caspase family protein [Campylobacterota bacterium]", "diamond", "603", "52", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", null, null, null, null, "Campylobacterota bacterium"], [28144605, "PRJNA1144090_P_NODE_91085_length_263_cov_1.505263_g90550_i0", "PRJNA1144090", "91085", "263", "1.505263", "3.95884169", "Campylobacterota bacterium", "2026809", "Bacteria", "Bacteria", "62.4", "5.79e-9", "", "NR", "MCB9492830.1", "2026809", "g90550", "i0", "44.9", "0.889733840304182", "78", "31", "89", "2", "236", "3", "813", "878", "MCB9492830.1 hypothetical protein [Campylobacterota bacterium]", "diamond", "234", "62.4", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", null, null, null, null, "Campylobacterota bacterium"], [28365194, "PRJNA1144090_P_NODE_6446_length_1126_cov_8.470085_g6116_i0", "PRJNA1144090", "6446", "1126", "8.470085", "95.3731571", "Campylobacterota bacterium", "2026809", "Bacteria", "Bacteria", "161", "1.9199999999999998e-42", "", "NR", "MEA3353466.1", "2026809", "g6116", "i0", "33.9", "0.967140319715808", "363", "176", "93.5", "16", "1057", "5", "3", "313", "MEA3353466.1 DUF2235 domain-containing protein [Campylobacterota bacterium]", "diamond", "1089", "161", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", null, null, null, null, "Campylobacterota bacterium"], [29627889, "PRJNA1144090_P_NODE_71150_length_300_cov_1.321586_g70615_i0", "PRJNA1144090", "71150", "300", "1.321586", "3.964758", "Campylobacterota bacterium", "2026809", "Bacteria", "Bacteria", "42.4", "0.041", "", "NR", "MDQ1339672.1", "2026809", "g70615", "i0", "42.1", "0.57", "57", "30", "57", "1", "182", "12", "16", "69", "MDQ1339672.1 hypothetical protein [Campylobacterota bacterium]", "diamond", "171", "42.4", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", null, null, null, null, "Campylobacterota bacterium"], [30355369, "PRJNA1144090_P_NODE_51312_length_356_cov_1.632509_g50777_i0", "PRJNA1144090", "51312", "356", "1.632509", "5.81173204", "Campylobacter coli", "195", "Bacteria", "Bacteria", "130", "1.01e-36", "", "NR", "WP_402370336.1", "195", "g50777", "i0", "100", "0.530898876404494", "63", "0", "53.1", "0", "355", "167", "37", "99", "WP_402370336.1 hypothetical protein [Campylobacter coli]", "diamond", "189", "130", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter coli"], [31144246, "PRJNA1144090_P_NODE_108815_length_245_cov_1.581395_g108280_i0", "PRJNA1144090", "108815", "245", "1.581395", "3.87441775", "Campylobacter coli", "195", "Bacteria", "Bacteria", "77.8", "1.05e-16", "", "NR", "WP_402370331.1", "195", "g108280", "i0", "100", "0.46530612244898", "38", "0", "46.5", "0", "131", "244", "1", "38", "WP_402370331.1 hypothetical protein [Campylobacter coli]", "diamond", "114", "77.8", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter coli"], [31492782, "PRJNA1144090_P_NODE_58556_length_332_cov_1.212355_g58021_i0", "PRJNA1144090", "58556", "332", "1.212355", "4.0250186", "Nitratifractor sp.", "2268144", "Bacteria", "Bacteria", "44.3", "0.00896", "", "NR", "HGZ70199.1", "2268144", "g58021", "i0", "33.7", "0.75", "83", "39", "64.2", "3", "308", "96", "35", "113", "HGZ70199.1 hypothetical protein [Nitratifractor sp.]", "diamond", "249", "44.3", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Sulfurovaceae", "Nitratifractor", "Nitratifractor sp."], [31714042, "PRJNA1144090_P_NODE_75157_length_291_cov_2.119266_g74622_i0", "PRJNA1144090", "75157", "291", "2.119266", "6.16706406", "Campylobacter coli", "195", "Bacteria", "Bacteria", "197", "3.99e-59", "", "NR", "WP_402370334.1", "195", "g74622", "i0", "100", "1", "97", "0", "100", "0", "291", "1", "259", "355", "WP_402370334.1 protein rep [Campylobacter coli]", "diamond", "291", "197", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter coli"], [31797624, "PRJNA1144090_P_NODE_81517_length_279_cov_1.495146_g80982_i0", "PRJNA1144090", "81517", "279", "1.495146", "4.17145734", "Bacteria", "2", "Bacteria", "Bacteria", "51.2", "2.71e-6", "", "NR", "GAA9125269.1", "210", "g80982", "i0", "69", "2.53763440860215", "29", "9", "31.2", "0", "271", "185", "4", "32", "GAA9125269.1 hypothetical protein Kyoto190A_0810 [Helicobacter pylori]", "diamond", "708", "51.2", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [32882945, "PRJNA1144090_P_NODE_53440_length_348_cov_2.240000_g52905_i0", "PRJNA1144090", "53440", "348", "2.24", "7.7952", "Helicobacter marmotae", "152490", "Bacteria", "Bacteria", "48.5", "0.00116", "", "NR", "WP_104699558.1", "152490", "g52905", "i0", "31.6", "0.681034482758621", "79", "52", "68.1", "1", "2", "238", "192", "268", "WP_104699558.1 DNA polymerase I [Helicobacter marmotae]", "diamond", "237", "48.5", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter marmotae"]], "truncated": false, "filtered_table_rows_count": 21, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"bioproject\" = :p0 and \"tax_kingdom\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "PRJNA1144090", "p1": "Pseudomonadati", "p2": "Campylobacterota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1144090&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "PRJNA1144090", "label": "PRJNA1144090", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1144090&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "diamond", "label": "diamond", "count": 11, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1144090&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota&analysis=diamond", "selected": false}, {"value": "blastn", "label": "blastn", "count": 10, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1144090&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota&analysis=blastn", "selected": false}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1144090&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1144090&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1144090&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1144090&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1144090&tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1144090&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "Campylobacterota", "label": "Campylobacterota", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1144090&tax_kingdom=Pseudomonadati", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 439.0825849986868}