{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where bioproject = \"PRJNA1123309\", tax_kingdom = \"Pseudomonadati\" and tax_phylum = \"Campylobacterota\"", "rows": [[2304335, "PRJNA1123309_P_NODE_44342_length_259_cov_2.413978_g43962_i0", "PRJNA1123309", "44342", "259", "2.413978", "6.25220302", "Campylobacter", "194", "Bacteria", "Bacteria", "97.1", "1.07e-15", "", "NTclustered", "gi|2198378962|gb|CP059599.1|", "1660078", "g43962", "i0", "96.552", "4.3976833976834", "58", "2", "22", "0", "169", "226", "62475", "62532", "Campylobacter sp. RM5004 chromosome, complete genome", "blastn", "1139", "97.1", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter sp. RM5004"], [7931158, "PRJNA1123309_P_NODE_26787_length_312_cov_2.497908_g26407_i0", "PRJNA1123309", "26787", "312", "2.497908", "7.79347296", "Campylobacter gracilis", "824", "Bacteria", "Bacteria", "207", "5.88e-49", "", "NTclustered", "gi|909717139|gb|CP012196.1|", "824", "g26407", "i0", "91.892", "0.958333333333333", "148", "12", "47", "0", "4", "151", "1375119", "1374972", "Campylobacter gracilis strain ATCC 33236, complete genome", "blastn", "299", "207", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter gracilis"], [8682138, "PRJNA1123309_P_NODE_25607_length_318_cov_1.738776_g25227_i0", "PRJNA1123309", "25607", "318", "1.738776", "5.52930768", "root", "1", "Root_unresolved", "Root_unresolved", "62.1", "4.95e-5", "", "NTclustered", "gi|2523101058|gb|CP122954.1|", "210", "g25227", "i0", "100", "9.7861635220125809", "33", "0", "10", "0", "118", "150", "1143547", "1143579", "Helicobacter pylori strain BS06 chromosome, complete genome", "blastn", "3112", "62.1", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [8682246, "PRJNA1123309_P_NODE_54067_length_249_cov_0.886364_g53687_i0", "PRJNA1123309", "54067", "249", "0.886364", "2.20704636", "Campylobacter", "194", "Bacteria", "Bacteria", "424", "4.15e-114", "", "NTclustered", "gi|2093921460|gb|CP082871.1|", "76517", "g53687", "i0", "98.34", "1.93574297188755", "241", "4", "97", "0", "8", "248", "856603", "856363", "Campylobacter hominis strain FDAARGOS_1467 chromosome, complete genome", "blastn", "482", "424", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter hominis"], [11757033, "PRJNA1123309_P_NODE_5670_length_614_cov_2.892791_g5321_i0", "PRJNA1123309", "5670", "614", "2.892791", "17.76173674", "Campylobacter showae", "204", "Bacteria", "Bacteria", "1110", "0", "", "NTclustered", "gi|1483583529|emb|LT631453.1|", "204", "g5321", "i0", "99.671", "226.511400651466", "607", "2", "99", "0", "8", "614", "389897", "389291", "Campylobacter showae strain B91_SCBr genome assembly, chromosome: I", "blastn", "139078", "1110", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter showae"], [13032014, "PRJNA1123309_P_NODE_40711_length_269_cov_1.188776_g40331_i0", "PRJNA1123309", "40711", "269", "1.188776", "3.19780744", "Campylobacter rectus", "203", "Bacteria", "Bacteria", "418", "2.1099999999999997e-112", "", "NTclustered", "gi|1622745323|gb|CP012543.1|", "203", "g40331", "i0", "96.443", "253.219330855019", "253", "9", "94", "0", "1", "253", "160513", "160765", "Campylobacter rectus strain ATCC 33238, complete genome", "blastn", "68116", "418", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter rectus"], [13032119, "PRJNA1123309_P_NODE_50971_length_251_cov_0.876404_g50591_i0", "PRJNA1123309", "50971", "251", "0.876404", "2.19977404", "Campylobacter rectus", "203", "Bacteria", "Bacteria", "379", "9.189999999999998e-101", "", "NTclustered", "gi|1622745323|gb|CP012543.1|", "203", "g50591", "i0", "95.745", "8.38645418326693", "235", "10", "94", "0", "17", "251", "681900", "682134", "Campylobacter rectus strain ATCC 33238, complete genome", "blastn", "2105", "379", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter rectus"], [15581338, "PRJNA1123309_P_NODE_53453_length_249_cov_1.664773_g53073_i0", "PRJNA1123309", "53453", "249", "1.664773", "4.14528477", "Campylobacter gracilis", "824", "Bacteria", "Bacteria", "294", "3.39e-75", "", "NTclustered", "gi|909717139|gb|CP012196.1|", "824", "g53073", "i0", "88.75", "1.92771084337349", "240", "27", "96", "0", "5", "244", "2074817", "2074578", "Campylobacter gracilis strain ATCC 33236, complete genome", "blastn", "480", "294", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter gracilis"], [16331431, "PRJNA1123309_P_NODE_38833_length_273_cov_2.170000_g38453_i0", "PRJNA1123309", "38833", "273", "2.17", "5.9241", "root", "1", "Root_unresolved", "Root_unresolved", "455", "1.6300000000000002e-123", "", "NTclustered", "gi|2030387999|gb|CP068565.1|", "195", "g38453", "i0", "97.736", "319.142857142857", "265", "4", "97", "2", "1", "264", "770781", "770518", "Campylobacter coli strain CC19DZ036 chromosome, complete genome", "blastn", "87126", "455", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter coli"], [16855671, "PRJNA1123309_P_NODE_48734_length_252_cov_0.871508_g48354_i0", "PRJNA1123309", "48734", "252", "0.871508", "2.19620016", "Campylobacter gracilis", "824", "Bacteria", "Bacteria", "374", "4.2899999999999985e-99", "", "NTclustered", "gi|909717139|gb|CP012196.1|", "824", "g48354", "i0", "95.319", "1.86507936507937", "235", "11", "93", "0", "1", "235", "408977", "409211", "Campylobacter gracilis strain ATCC 33236, complete genome", "blastn", "470", "374", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter gracilis"], [18880610, "PRJNA1123309_P_NODE_41955_length_266_cov_1.015544_g41575_i0", "PRJNA1123309", "41955", "266", "1.015544", "2.70134704", "Campylobacter", "194", "Bacteria", "Bacteria", "449", "7.38e-122", "", "NTclustered", "gi|397310297|gb|JQ228546.1|", "204", "g41575", "i0", "98.077", "114.34962406015", "260", "1", "96", "2", "11", "266", "1051", "1310", "Campylobacter showae strain WAL 18658 16S ribosomal RNA gene, partial sequence", "blastn", "30417", "449", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter showae"], [23230453, "PRJNA1123309_P_NODE_22479_length_336_cov_3.752852_g22100_i0", "PRJNA1123309", "22479", "336", "3.752852", "12.60958272", "Campylobacter showae", "204", "Bacteria", "Bacteria", "603", "6.979999999999997e-168", "", "NTclustered", "gi|1483583529|emb|LT631453.1|", "204", "g22100", "i0", "99.398", "225.279761904762", "332", "2", "99", "0", "5", "336", "390423", "390092", "Campylobacter showae strain B91_SCBr genome assembly, chromosome: I", "blastn", "75694", "603", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter showae"], [24504180, "PRJNA1123309_P_NODE_28560_length_303_cov_4.352174_g28180_i0", "PRJNA1123309", "28560", "303", "4.352174", "13.18708722", "Campylobacter showae", "204", "Bacteria", "Bacteria", "532", "8.269999999999998e-147", "", "NTclustered", "gi|1483583529|emb|LT631453.1|", "204", "g28180", "i0", "100", "236.23102310231", "288", "0", "95", "0", "6", "293", "390519", "390806", "Campylobacter showae strain B91_SCBr genome assembly, chromosome: I", "blastn", "71578", "532", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter showae"], [28965142, "PRJNA1123309_P_NODE_64588_length_243_cov_0.917647_g64208_i0", "PRJNA1123309", "64588", "243", "0.917647", "2.22988221", "Campylobacterota bacterium", "2026809", "Bacteria", "Bacteria", "43.9", "0.0135", "", "NR", "MCL4431196.1", "2026809", "g64208", "i0", "41.2", "0.62962962962963", "51", "30", "63", "0", "71", "223", "2", "52", "MCL4431196.1 hypothetical protein [Campylobacterota bacterium]", "diamond", "153", "43.9", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", null, null, null, null, "Campylobacterota bacterium"]], "truncated": false, "filtered_table_rows_count": 14, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"bioproject\" = :p0 and \"tax_kingdom\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "PRJNA1123309", "p1": "Pseudomonadati", "p2": "Campylobacterota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1123309&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "PRJNA1123309", "label": "PRJNA1123309", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1123309&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "blastn", "label": "blastn", "count": 13, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1123309&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota&analysis=blastn", "selected": false}, {"value": "diamond", "label": "diamond", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1123309&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota&analysis=diamond", "selected": false}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1123309&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1123309&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1123309&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1123309&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1123309&tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1123309&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "Campylobacterota", "label": "Campylobacterota", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1123309&tax_kingdom=Pseudomonadati", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 425.83311098860577}