{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where bioproject = \"PRJNA1040136\" and tax_kingdom = \"Pseudomonadati\"", "rows": [[1444408, "PRJNA1040136_S_NODE_2762_length_241_cov_0.916667_g2759_i0", "PRJNA1040136", "2762", "241", "0.916667", "2.20916747", "root", "1", "Root_unresolved", "Root_unresolved", "115", "1.29e-30", "", "NR", "WP_205637565.1", "470", "g2759", "i0", "89.1", "12.7095435684647", "64", "7", "79.7", "0", "1", "192", "89", "152", "WP_205637565.1 histone H2B family protein, partial [Acinetobacter baumannii]", "diamond", "3063", "115", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Moraxellales", "Moraxellaceae", "Acinetobacter", "Acinetobacter baumannii"], [7822346, "PRJNA1040136_S_NODE_147_length_559_cov_2.481481_g144_i0", "PRJNA1040136", "147", "559", "2.481481", "13.87147879", "Planctomycetota bacterium", "2026780", "Bacteria", "Bacteria", "54.7", "0.015", "", "NTclustered", "gi|2621706020|emb|OY764082.1|", "2026780", "g144", "i0", "96.875", "0.21824686940966", "32", "1", "6", "0", "25", "56", "522043", "522074", "MAG: Planctomycetota bacterium isolate b62d8c61-b663-4402-817f-8d709632624f genome assembly, chromosome: 1", "blastn", "122", "54.7", "1", "Bacteria", "PVC group", "Pseudomonadati", "Planctomycetota", null, null, null, null, "Planctomycetota bacterium"], [14198346, "PRJNA1040136_S_NODE_592_length_382_cov_4.200647_g589_i0", "PRJNA1040136", "592", "382", "4.200647", "16.04647154", "Flavobacterium dauae", "1563479", "Bacteria", "Bacteria", "56.5", "0.003", "", "NTclustered", "gi|2557430891|gb|CP130821.1|", "1563479", "g589", "i0", "100", "0.0785340314136126", "30", "0", "8", "0", "265", "294", "1161409", "1161438", "Flavobacterium dauae strain TCH3-2 chromosome, complete genome", "blastn", "30", "56.5", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Flavobacteriia", "Flavobacteriales", "Flavobacteriaceae", "Flavobacterium", "Flavobacterium dauae"], [15472563, "PRJNA1040136_S_NODE_1653_length_277_cov_1.073529_g1650_i0", "PRJNA1040136", "1653", "277", "1.073529", "2.97367533", "Flavobacterium ammonificans", "1751056", "Bacteria", "Bacteria", "484", "2.1199999999999996e-132", "", "NTclustered", "gi|2119752067|dbj|AP025185.1|", "1751056", "g1650", "i0", "98.195", "1.9927797833935", "277", "5", "100", "0", "1", "277", "1055518", "1055794", "Flavobacterium ammonificans SHINM13 DNA, complete genome", "blastn", "552", "484", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Flavobacteriia", "Flavobacteriales", "Flavobacteriaceae", "Flavobacterium", "Flavobacterium ammonificans"], [20570913, "PRJNA1040136_S_NODE_1517_length_284_cov_1.957346_g1514_i0", "PRJNA1040136", "1517", "284", "1.957346", "5.55886264", "Vibrio gallaecicus", "552386", "Bacteria", "Bacteria", "52.8", "0.026", "", "NTclustered", "gi|2271101991|dbj|AP025490.1|", "552386", "g1514", "i0", "100", "0.0985915492957746", "28", "0", "10", "0", "1", "28", "1609580", "1609553", "Vibrio gallaecicus CECT 7244 DNA, chromosome 1, complete sequence", "blastn", "28", "52.8", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Vibrionales", "Vibrionaceae", "Vibrio", "Vibrio gallaecicus"], [26591747, "PRJNA1040136_S_NODE_1621_length_279_cov_1.048544_g1618_i0", "PRJNA1040136", "1621", "279", "1.048544", "2.92543776", "Gallionella sp.", "2052161", "Bacteria", "Bacteria", "78.2", "1.94e-14", "", "NR", "MFA6972877.1", "2052161", "g1618", "i0", "68", "0.537634408602151", "50", "16", "53.8", "0", "278", "129", "535", "584", "MFA6972877.1 hypothetical protein [Gallionella sp.]", "diamond", "150", "78.2", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Betaproteobacteria", "Nitrosomonadales", "Gallionellaceae", "Gallionella", "Gallionella sp."], [27667236, "PRJNA1040136_S_NODE_1664_length_276_cov_2.576355_g1661_i0", "PRJNA1040136", "1664", "276", "2.576355", "7.1107398", "Bacteroidia bacterium", "2044936", "Bacteria", "Bacteria", "178", "1.7e-52", "", "NR", "HRA60763.1", "2044936", "g1661", "i0", "96.7", "1", "92", "3", "100", "0", "276", "1", "290", "381", "HRA60763.1 phage/plasmid replication protein [Bacteroidia bacterium]", "diamond", "276", "178", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Bacteroidia", null, null, null, "Bacteroidia bacterium"], [27793461, "PRJNA1040136_S_NODE_2124_length_257_cov_1.255435_g2121_i0", "PRJNA1040136", "2124", "257", "1.255435", "3.22646795", "Chryseobacterium sp.", "1871047", "Bacteria", "Bacteria", "92.8", "1.01e-19", "", "NR", "TXI87065.1", "1871047", "g2121", "i0", "67.7", "0.75875486381323", "65", "20", "74.7", "1", "255", "64", "485", "549", "TXI87065.1 MAG: ribonucleoside-diphosphate reductase subunit alpha [Chryseobacterium sp.]", "diamond", "195", "92.8", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Flavobacteriia", "Flavobacteriales", "Weeksellaceae", "Chryseobacterium", "Chryseobacterium sp."], [28038025, "PRJNA1040136_S_NODE_1945_length_264_cov_5.031414_g1942_i0", "PRJNA1040136", "1945", "264", "5.031414", "13.28293296", "Bacteria", "2", "Bacteria", "Bacteria", "46.2", "0.00285", "", "NR", "MEM8946921.1", "2026780", "g1942", "i0", "37", "1.18181818181818", "46", "29", "52.3", "0", "61", "198", "240", "285", "MEM8946921.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase [Planctomycetota bacterium]", "diamond", "312", "46.6", "0.991416309012876", "Bacteria", "PVC group", "Pseudomonadati", "Planctomycetota", null, null, null, null, "Planctomycetota bacterium"], [29372100, "PRJNA1040136_S_NODE_1049_length_315_cov_1.409091_g1046_i0", "PRJNA1040136", "1049", "315", "1.409091", "4.43863665", "Chitinophagaceae bacterium", "1869212", "Bacteria", "Bacteria", "149", "1.49e-44", "", "NR", "MBP6625264.1", "1869212", "g1046", "i0", "98.7", "0.723809523809524", "76", "1", "72.4", "0", "258", "31", "1", "76", "MBP6625264.1 hypothetical protein [Chitinophagaceae bacterium]", "diamond", "228", "149", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Chitinophagia", "Chitinophagales", "Chitinophagaceae", null, "Chitinophagaceae bacterium"], [30098278, "PRJNA1040136_S_NODE_1432_length_290_cov_1.239631_g1429_i0", "PRJNA1040136", "1432", "290", "1.239631", "3.5949299", "Algoriphagus locisalis", "305507", "Bacteria", "Bacteria", "45.8", "0.00393", "", "NR", "WP_091698113.1", "305507", "g1429", "i0", "28", "0.962068965517241", "93", "62", "91", "2", "288", "25", "47", "139", "WP_091698113.1 hypothetical protein [Algoriphagus locisalis]", "diamond", "279", "45.8", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Cytophagia", "Cytophagales", "Cyclobacteriaceae", "Algoriphagus", "Algoriphagus locisalis"], [30161350, "PRJNA1040136_S_NODE_332_length_452_cov_6.596306_g329_i0", "PRJNA1040136", "332", "452", "6.596306", "29.81530312", "Bacteroidaceae bacterium", "2212467", "Bacteria", "Bacteria", "48.9", "0.00188", "", "NR", "MBQ5627129.1", "2212467", "g329", "i0", "33", "1.26106194690265", "97", "59", "60.4", "2", "440", "168", "208", "304", "MBQ5627129.1 5'-nucleotidase [Bacteroidaceae bacterium]", "diamond", "570", "48.9", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Bacteroidia", "Bacteroidales", "Bacteroidaceae", null, "Bacteroidaceae bacterium"], [32121776, "PRJNA1040136_S_NODE_258_length_482_cov_2.823961_g255_i0", "PRJNA1040136", "258", "482", "2.823961", "13.61149202", "Pseudomonadota bacterium", "1977087", "Bacteria", "Bacteria", "65.1", "9.07e-10", "", "NR", "NBP02836.1", "1977087", "g255", "i0", "37.4", "0.566390041493776", "91", "47", "53.5", "2", "8", "265", "57", "142", "NBP02836.1 hypothetical protein [Pseudomonadota bacterium]", "diamond", "273", "65.1", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", null, null, null, null, "Pseudomonadota bacterium"], [32248480, "PRJNA1040136_S_NODE_498_length_404_cov_2.948640_g495_i0", "PRJNA1040136", "498", "404", "2.94864", "11.9125056", "Bacteroidia bacterium", "2044936", "Bacteria", "Bacteria", "50.4", "3.84e-4", "", "NR", "HRA60763.1", "2044936", "g495", "i0", "88.9", "0.200495049504951", "27", "3", "20", "0", "99", "19", "1", "27", "HRA60763.1 phage/plasmid replication protein [Bacteroidia bacterium]", "diamond", "81", "50.4", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Bacteroidia", null, null, null, "Bacteroidia bacterium"]], "truncated": false, "filtered_table_rows_count": 14, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"bioproject\" = :p0 and \"tax_kingdom\" = :p1 order by rowid limit 101", "params": {"p0": "PRJNA1040136", "p1": "Pseudomonadati"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1040136&tax_kingdom=Pseudomonadati", "results": [{"value": "PRJNA1040136", "label": "PRJNA1040136", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_kingdom=Pseudomonadati", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1040136&tax_kingdom=Pseudomonadati", "results": [{"value": "diamond", "label": "diamond", "count": 10, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1040136&tax_kingdom=Pseudomonadati&analysis=diamond", "selected": false}, {"value": "blastn", "label": "blastn", "count": 4, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1040136&tax_kingdom=Pseudomonadati&analysis=blastn", "selected": false}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1040136&tax_kingdom=Pseudomonadati", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1040136&tax_kingdom=Pseudomonadati&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1040136&tax_kingdom=Pseudomonadati", "results": [{"value": "FCB group", "label": "FCB group", "count": 8, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1040136&tax_kingdom=Pseudomonadati&tax_clade=FCB+group", "selected": false}, {"value": "PVC group", "label": "PVC group", "count": 2, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1040136&tax_kingdom=Pseudomonadati&tax_clade=PVC+group", "selected": false}], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1040136&tax_kingdom=Pseudomonadati", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1040136", "selected": true}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1040136&tax_kingdom=Pseudomonadati", "results": [{"value": "Bacteroidota", "label": "Bacteroidota", "count": 8, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1040136&tax_kingdom=Pseudomonadati&tax_phylum=Bacteroidota", "selected": false}, {"value": "Pseudomonadota", "label": "Pseudomonadota", "count": 4, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1040136&tax_kingdom=Pseudomonadati&tax_phylum=Pseudomonadota", "selected": false}, {"value": "Planctomycetota", "label": "Planctomycetota", "count": 2, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1040136&tax_kingdom=Pseudomonadati&tax_phylum=Planctomycetota", "selected": false}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 344.91573699051514}