{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where bioproject = \"PRJNA1034994\" and tax_phylum = \"Spirochaetota\"", "rows": [[3558175, "PRJNA1034994_P_NODE_4583_length_273_cov_2.305000_g4499_i0", "PRJNA1034994", "4583", "273", "2.305", "6.29265", "Treponema", "157", "Bacteria", "Bacteria", "499", "7.45e-137", "", "NTclustered", "gi|1807378492|gb|CP048020.1|", "69710", "g4499", "i0", "99.634", "182.139194139194", "273", "1", "100", "0", "1", "273", "2078249", "2077977", "Treponema vincentii strain OMZ 804 chromosome, complete genome", "blastn", "49724", "499", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema vincentii"], [4835602, "PRJNA1034994_P_NODE_3324_length_289_cov_1.314815_g3240_i0", "PRJNA1034994", "3324", "289", "1.314815", "3.79981535", "Treponema", "157", "Bacteria", "Bacteria", "490", "4.78e-134", "", "NTclustered", "gi|1996296230|gb|CP031393.1|", "58231", "g3240", "i0", "97.232", "193.494809688581", "289", "8", "100", "0", "1", "289", "1679582", "1679294", "Treponema medium strain ATCC 700293 chromosome, complete genome", "blastn", "55920", "490", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema medium"], [18020122, "PRJNA1034994_P_NODE_7175_length_249_cov_2.431818_g7091_i0", "PRJNA1034994", "7175", "249", "2.431818", "6.05522682", "Treponema bryantii", "163", "Bacteria", "Bacteria", "353", "5.52e-93", "", "NTclustered", "gi|2581915939|dbj|AP025286.1|", "163", "g7091", "i0", "92.4", "150.273092369478", "250", "16", "100", "3", "1", "249", "704162", "703915", "Treponema bryantii JCM 32280 DNA, complete genome", "blastn", "37418", "353", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema bryantii"], [19294029, "PRJNA1034994_P_NODE_1236_length_462_cov_1.974293_g1152_i0", "PRJNA1034994", "1236", "462", "1.974293", "9.12123366", "Treponema parvum", "138851", "Bacteria", "Bacteria", "484", "3.73e-132", "", "NTclustered", "gi|2023447176|gb|CP054142.1|", "138851", "g1152", "i0", "86.682", "194.705627705628", "443", "51", "95", "8", "25", "462", "452995", "452556", "Treponema parvum strain ATCC 700770 chromosome, complete genome", "blastn", "89954", "484", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema parvum"], [23120413, "PRJNA1034994_P_NODE_1639_length_396_cov_1.851393_g1555_i0", "PRJNA1034994", "1639", "396", "1.851393", "7.33151628", "Treponema sp.", "166", "Bacteria", "Bacteria", "508", "1.87e-139", "", "NTclustered", "gi|2189480979|gb|CP091737.1|", "166", "g1555", "i0", "89.924", "205.335858585859", "397", "37", "100", "3", "1", "396", "1474479", "1474873", "MAG: Treponema sp. isolate nC27_bin.160.fa chromosome", "blastn", "81313", "508", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema sp."], [29940544, "PRJNA1034994_P_NODE_9931_length_242_cov_0.911243_g9847_i0", "PRJNA1034994", "9931", "242", "0.911243", "2.20520806", "Treponemataceae bacterium", "2854022", "Bacteria", "Bacteria", "76.3", "1.03e-14", "", "NR", "HOT63295.1", "2854022", "g9847", "i0", "79.5", "0.545454545454545", "44", "9", "54.5", "0", "242", "111", "183", "226", "HOT63295.1 50S ribosomal protein L1 [Treponemataceae bacterium]", "diamond", "132", "76.3", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", null, "Treponemataceae bacterium"], [31203732, "PRJNA1034994_P_NODE_8335_length_246_cov_1.323699_g8251_i0", "PRJNA1034994", "8335", "246", "1.323699", "3.25629954", "Candidatus Treponema faecavium", "2838769", "Bacteria", "Bacteria", "113", "6.67e-28", "", "NR", "HIW35625.1", "2838769", "g8251", "i0", "70.4", "2.96341463414634", "81", "22", "98.8", "1", "245", "3", "66", "144", "HIW35625.1 polyprenyl synthetase family protein [Candidatus Treponema faecavium]", "diamond", "729", "113", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Candidatus Treponema faecavium"], [32311699, "PRJNA1034994_P_NODE_7999_length_247_cov_0.885057_g7915_i0", "PRJNA1034994", "7999", "247", "0.885057", "2.18609079", "Treponema lecithinolyticum", "53418", "Bacteria", "Bacteria", "80.5", "1.76e-15", "", "NR", "WP_385987346.1", "53418", "g7915", "i0", "100", "0.425101214574899", "35", "0", "42.5", "0", "107", "3", "1", "35", "WP_385987346.1 electron transport complex subunit RsxC [Treponema lecithinolyticum]", "diamond", "105", "80.5", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema lecithinolyticum"]], "truncated": false, "filtered_table_rows_count": 8, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"bioproject\" = :p0 and \"tax_phylum\" = :p1 order by rowid limit 101", "params": {"p0": "PRJNA1034994", "p1": "Spirochaetota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1034994&tax_phylum=Spirochaetota", "results": [{"value": "PRJNA1034994", "label": "PRJNA1034994", "count": 8, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_phylum=Spirochaetota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1034994&tax_phylum=Spirochaetota", "results": [{"value": "blastn", "label": "blastn", "count": 5, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1034994&tax_phylum=Spirochaetota&analysis=blastn", "selected": false}, {"value": "diamond", "label": "diamond", "count": 3, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1034994&tax_phylum=Spirochaetota&analysis=diamond", "selected": false}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1034994&tax_phylum=Spirochaetota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 8, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1034994&tax_phylum=Spirochaetota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1034994&tax_phylum=Spirochaetota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1034994&tax_phylum=Spirochaetota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 8, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1034994&tax_phylum=Spirochaetota&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1034994&tax_phylum=Spirochaetota", "results": [{"value": "Spirochaetota", "label": "Spirochaetota", "count": 8, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1034994", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 206.261872000141}