{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where bioproject = \"PRJNA1031674\", tax_kingdom = \"Pseudomonadati\" and tax_phylum = \"Campylobacterota\"", "rows": [[6109913, "PRJNA1031674_P_NODE_11265_length_289_cov_1.425926_g11054_i0", "PRJNA1031674", "11265", "289", "1.425926", "4.12092614", "Campylobacterales", "213849", "Bacteria", "Bacteria", "529", "1.01e-145", "", "NTclustered", "gi|385731235|gb|JQ743035.1|", "196", "g11054", "i0", "99.655", "140.9723183391", "290", "0", "100", "1", "1", "289", "1383", "1094", "Campylobacter fetus strain campy-a11 16S ribosomal RNA gene, partial sequence", "blastn", "40741", "534", "0.99063670411985", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter fetus"], [6109976, "PRJNA1031674_P_NODE_1745_length_569_cov_1.937500_g1538_i0", "PRJNA1031674", "1745", "569", "1.9375", "11.024375", "root", "1", "Root_unresolved", "Root_unresolved", "1051", "0", "", "NTclustered", "gi|1226876681|gb|CP022559.1|", "197", "g1538", "i0", "100", "100", "569", "0", "100", "0", "1", "569", "698321", "698889", "Campylobacter jejuni strain 11168H/araE chromosome, complete genome", "blastn", "56900", "1051", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter jejuni"], [9935045, "PRJNA1031674_P_NODE_5268_length_368_cov_2.088136_g5058_i0", "PRJNA1031674", "5268", "368", "2.088136", "7.68434048", "Aliarcobacter", "2321111", "Bacteria", "Bacteria", "680", "0", "", "NTclustered", "gi|1231709647|emb|LT906455.1|", "28197", "g5058", "i0", "100", "388.891304347826", "368", "0", "100", "0", "1", "368", "851653", "852020", "Arcobacter butzleri strain NCTC12481 genome assembly, chromosome: 1", "blastn", "143112", "680", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Arcobacteraceae", "Aliarcobacter", "Aliarcobacter butzleri"], [10369998, "PRJNA1031674_P_NODE_26189_length_244_cov_0.900585_g25978_i0", "PRJNA1031674", "26189", "244", "0.900585", "2.1974274", "Campylobacter showae", "204", "Bacteria", "Bacteria", "361", "3.219999999999999e-95", "", "NTclustered", "gi|1483583525|emb|LT631449.1|", "204", "g25978", "i0", "94.093", "12.7540983606557", "237", "14", "97", "0", "8", "244", "1336423", "1336187", "Campylobacter showae strain 129_VTPPs genome assembly, chromosome: I", "blastn", "3112", "361", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter showae"], [20567916, "PRJNA1031674_P_NODE_25857_length_245_cov_0.866279_g25646_i0", "PRJNA1031674", "25857", "245", "0.866279", "2.12238355", "Campylobacter showae", "204", "Bacteria", "Bacteria", "375", "1.16e-99", "", "NTclustered", "gi|1622747600|gb|CP012544.1|", "204", "g25646", "i0", "94.286", "13.0285714285714", "245", "14", "100", "0", "1", "245", "515447", "515203", "Campylobacter showae strain ATCC 51146 chromosome, complete genome", "blastn", "3192", "375", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter showae"], [26782051, "PRJNA1031674_P_NODE_10261_length_294_cov_1.742081_g10050_i0", "PRJNA1031674", "10261", "294", "1.742081", "5.12171814", "Campylobacter coli", "195", "Bacteria", "Bacteria", "197", "2.8300000000000007e-59", "", "NR", "WP_402370334.1", "195", "g10050", "i0", "99", "0.989795918367347", "97", "1", "99", "0", "293", "3", "278", "374", "WP_402370334.1 protein rep [Campylobacter coli]", "diamond", "291", "197", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter coli"], [27161263, "PRJNA1031674_P_NODE_23442_length_249_cov_0.875000_g23231_i0", "PRJNA1031674", "23442", "249", "0.875", "2.17875", "Campylobacter jejuni", "197", "Bacteria", "Bacteria", "84", "3.25e-19", "", "NR", "WP_240371287.1", "197", "g23231", "i0", "97.4", "0.457831325301205", "38", "1", "45.8", "0", "115", "2", "1", "38", "WP_240371287.1 hypothetical protein, partial [Campylobacter jejuni]", "diamond", "114", "84", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter jejuni"], [28014472, "PRJNA1031674_P_NODE_17785_length_267_cov_2.134021_g17574_i0", "PRJNA1031674", "17785", "267", "2.134021", "5.69783607", "Campylobacter lari", "201", "Bacteria", "Bacteria", "137", "1.34e-39", "", "NR", "MCH3719200.1", "201", "g17574", "i0", "100", "0.842696629213483", "75", "0", "84.3", "0", "42", "266", "1", "75", "MCH3719200.1 Ig-like domain-containing protein [Campylobacter lari]", "diamond", "225", "137", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter lari"], [28140839, "PRJNA1031674_P_NODE_10725_length_291_cov_1.756881_g10514_i0", "PRJNA1031674", "10725", "291", "1.756881", "5.11252371", "Campylobacter lari", "201", "Bacteria", "Bacteria", "60.1", "1.36e-9", "", "NR", "WP_240388828.1", "201", "g10514", "i0", "100", "0.319587628865979", "31", "0", "32", "0", "3", "95", "42", "72", "WP_240388828.1 hypothetical protein, partial [Campylobacter lari]", "diamond", "93", "60.1", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter lari"], [30912001, "PRJNA1031674_P_NODE_18814_length_263_cov_2.205263_g18603_i0", "PRJNA1031674", "18814", "263", "2.205263", "5.79984169", "Pseudomonadati", "3379134", "Bacteria", "Bacteria", "117", "7.369999999999998e-32", "", "NR", "MCH3719218.1", "201", "g18603", "i0", "100", "1.36882129277567", "60", "0", "68.4", "0", "262", "83", "45", "104", "MCH3719218.1 hypothetical protein [Campylobacter lari]", "diamond", "360", "117", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter lari"]], "truncated": false, "filtered_table_rows_count": 10, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"bioproject\" = :p0 and \"tax_kingdom\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "PRJNA1031674", "p1": "Pseudomonadati", "p2": "Campylobacterota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1031674&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "PRJNA1031674", "label": "PRJNA1031674", "count": 10, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1031674&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "blastn", "label": "blastn", "count": 5, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1031674&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota&analysis=blastn", "selected": false}, {"value": "diamond", "label": "diamond", "count": 5, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1031674&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota&analysis=diamond", "selected": false}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1031674&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 10, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1031674&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1031674&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1031674&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 10, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1031674&tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJNA1031674&tax_kingdom=Pseudomonadati&tax_phylum=Campylobacterota", "results": [{"value": "Campylobacterota", "label": "Campylobacterota", "count": 10, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1031674&tax_kingdom=Pseudomonadati", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 390.4690860072151}