{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where bioproject = \"PRJEB41113\", tax_kingdom = \"Pseudomonadati\" and tax_phylum = \"Spirochaetota\"", "rows": [[15017678, "PRJEB41113_S_NODE_11812_length_155_cov_1.974576_g11803_i0", "PRJEB41113", "11812", "155", "1.974576", "3.0605928", "Treponema", "157", "Bacteria", "Bacteria", "237", "3.2800000000000004e-58", "", "NTclustered", "gi|2265113193|gb|CP051148.1|", "69710", "g11803", "i0", "96.528", "3.69032258064516", "144", "4", "93", "1", "1", "144", "617653", "617511", "Treponema vincentii strain OMZ 861 chromosome, complete genome", "blastn", "572", "237", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema vincentii"], [16635950, "PRJEB41113_S_NODE_4254_length_192_cov_8.851613_g4245_i0", "PRJEB41113", "4254", "192", "8.851613", "16.99509696", "Treponema sp. OMZ 803", "120682", "Bacteria", "Bacteria", "353", "4.05e-93", "", "NTclustered", "gi|2265127813|gb|CP051195.1|", "120682", "g4245", "i0", "100", "27.359375", "191", "0", "99", "0", "2", "192", "1419931", "1419741", "Treponema sp. OMZ 803 strain BF2M chromosome, complete genome", "blastn", "5253", "353", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema sp. OMZ 803"], [21391954, "PRJEB41113_S_NODE_6037_length_181_cov_1.076389_g6028_i0", "PRJEB41113", "6037", "181", "1.076389", "1.94826409", "Treponema", "157", "Bacteria", "Bacteria", "335", "1.36e-87", "", "NTclustered", "gi|1996296230|gb|CP031393.1|", "58231", "g6028", "i0", "100", "11.9281767955801", "181", "0", "100", "0", "1", "181", "94711", "94531", "Treponema medium strain ATCC 700293 chromosome, complete genome", "blastn", "2159", "335", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema medium"], [27760340, "PRJEB41113_S_NODE_5504_length_184_cov_2.312925_g5495_i0", "PRJEB41113", "5504", "184", "2.312925", "4.255782", "Spirochaetota bacterium", "2202144", "Bacteria", "Bacteria", "45.1", "0.00256", "", "NR", "MFA5519240.1", "2202144", "g5495", "i0", "63.2", "0.619565217391304", "38", "14", "62", "0", "70", "183", "11", "48", "MFA5519240.1 hypothetical protein [Spirochaetota bacterium]", "diamond", "114", "45.1", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", null, null, null, null, "Spirochaetota bacterium"], [28328243, "PRJEB41113_S_NODE_4266_length_192_cov_5.509677_g4257_i0", "PRJEB41113", "4266", "192", "5.509677", "10.57857984", "Treponema sp.", "166", "Bacteria", "Bacteria", "56.2", "2.14e-8", "", "NR", "MBR1722813.1", "166", "g4257", "i0", "56.4", "0.609375", "39", "17", "60.9", "0", "71", "187", "1", "39", "MBR1722813.1 hypothetical protein [Treponema sp.]", "diamond", "117", "56.2", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema sp."], [28960074, "PRJEB41113_S_NODE_668_length_286_cov_1.333333_g659_i0", "PRJEB41113", "668", "286", "1.333333", "3.81333238", "Spirochaetota bacterium", "2202144", "Bacteria", "Bacteria", "89.4", "2.52e-19", "", "NR", "HNT13100.1", "2202144", "g659", "i0", "51.2", "0.881118881118881", "84", "41", "88.1", "0", "24", "275", "159", "242", "HNT13100.1 hypothetical protein [Spirochaetota bacterium]", "diamond", "252", "89.4", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", null, null, null, null, "Spirochaetota bacterium"], [30191317, "PRJEB41113_S_NODE_6512_length_177_cov_3.735714_g6503_i0", "PRJEB41113", "6512", "177", "3.735714", "6.61221378", "Spirochaetota bacterium", "2202144", "Bacteria", "Bacteria", "75.9", "2.39e-14", "", "NR", "MBN2323266.1", "2202144", "g6503", "i0", "70.4", "0.915254237288136", "54", "16", "91.5", "0", "2", "163", "290", "343", "MBN2323266.1 TIR domain-containing protein [Spirochaetota bacterium]", "diamond", "162", "75.9", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", null, null, null, null, "Spirochaetota bacterium"], [31107550, "PRJEB41113_S_NODE_6475_length_177_cov_8.600000_g6466_i0", "PRJEB41113", "6475", "177", "8.6", "15.222", "Spirochaetaceae bacterium", "1898206", "Bacteria", "Bacteria", "55.5", "4.75e-7", "", "NR", "MBQ5781549.1", "1898206", "g6466", "i0", "92.9", "1.42372881355932", "28", "2", "47.5", "0", "89", "172", "1", "28", "MBQ5781549.1 ATP-binding protein [Spirochaetaceae bacterium]", "diamond", "252", "55.5", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Spirochaetaceae", null, "Spirochaetaceae bacterium"], [31170651, "PRJEB41113_S_NODE_7875_length_169_cov_3.363636_g7866_i0", "PRJEB41113", "7875", "169", "3.363636", "5.68454484", "uncultured Treponema sp.", "162155", "Bacteria", "Bacteria", "56.2", "2.83e-8", "", "NR", "WP_315450830.1", "162155", "g7866", "i0", "91.2", "0.603550295857988", "34", "3", "60.4", "0", "169", "68", "29", "62", "WP_315450830.1 hypothetical protein, partial [uncultured Treponema sp.]", "diamond", "102", "56.2", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "uncultured Treponema sp."]], "truncated": false, "filtered_table_rows_count": 9, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"bioproject\" = :p0 and \"tax_kingdom\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "PRJEB41113", "p1": "Pseudomonadati", "p2": "Spirochaetota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota", "results": [{"value": "PRJEB41113", "label": "PRJEB41113", "count": 9, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota", "results": [{"value": "diamond", "label": "diamond", "count": 6, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota&analysis=diamond", "selected": false}, {"value": "blastn", "label": "blastn", "count": 3, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota&analysis=blastn", "selected": false}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 9, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 9, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_phylum=Spirochaetota", "selected": true}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_kingdom=Pseudomonadati&tax_phylum=Spirochaetota", "results": [{"value": "Spirochaetota", "label": "Spirochaetota", "count": 9, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_kingdom=Pseudomonadati", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 222.63809900323395}