{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where bioproject = \"PRJEB41113\", tax_clade = \"core chlorophytes\" and tax_phylum = \"Chlorophyta\"", "rows": [[59116, "PRJEB41113_S_NODE_1481_length_241_cov_5.784314_g1472_i0", "PRJEB41113", "1481", "241", "5.784314", "13.94019674", "Trebouxia aggregata", "160068", "Plants", "Plants", "422", "1.44e-113", "", "NTclustered", "gi|162134383|gb|EU123994.1|", "160068", "g1472", "i0", "98.333", "13.1825726141079", "240", "4", "99", "0", "2", "241", "6238", "6477", "Trebouxia aggregata strain SAG 219-1d tRNA-Trp (trnW(cca)) gene, complete sequence; and probable transport protein (cysA) and beta subunit of acetyl-CoA carboxylase (accD) genes, complete cds; chloroplast", "blastn", "3177", "422", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Trebouxiophyceae", "Trebouxiales", "Trebouxiaceae", "Trebouxia", "Trebouxia aggregata"], [59127, "PRJEB41113_S_NODE_2721_length_212_cov_1.982857_g2712_i0", "PRJEB41113", "2721", "212", "1.982857", "4.20365684", "Sykidion marinum", "44573", "Plants", "Plants", "285", "1.69e-72", "", "NTclustered", "gi|1197510977|ref|NC_034710.1|", "44573", "g2712", "i0", "91.429", "1.48584905660377", "210", "15", "98", "3", "3", "210", "98034", "97826", "Pseudoneochloris marina culture UTEX:1445 chloroplast, complete genome", "blastn", "315", "285", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Ulvophyceae", "Sykidiales", "Sykidiacaeae", "Sykidion", "Sykidion marinum"], [2265103, "PRJEB41113_S_NODE_12962_length_153_cov_2.637931_g12953_i0", "PRJEB41113", "12962", "153", "2.637931", "4.03603443", "Jaagichlorella", "2304164", "Plants", "Plants", "283", "4.0799999999999995e-72", "", "NTclustered", "gi|694226588|gb|KM116462.1|", "31301", "g12953", "i0", "100", "98.5490196078431", "153", "0", "100", "0", "1", "153", "2699", "2547", "Heterochlorella luteoviridis strain SAG 2213 18S ribosomal RNA gene, partial sequence; 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exon 2,; tRNA-Gly (trnG-GCC) and tRNA-Met (trnM-CAU) genes, complete sequence; ATP-dependent Clp protease proteolytic subunit (clpP) gene, complete cds; tRNA-Leu (trnL-UAG) gene, complete sequence; photochlorophyllide reductase subunit L (chlL) gene, complete cds; tRNA-Gly (trnG-UCC) and tRNA-Trp (trnW-CCA) genes, complete sequence; photosystem II protein K (psbK) gene, complete cds; tRNA-Cys (trnC-GCA) gene, complete sequence; protochlorophyllide reductase subunit B (chlB), D1 reaction center protein of photosystem II (psbA), ribosomal protein S2 (rps2), and ribosomal protein S18 (rps18) genes, complete cds; exon 3,; tRNA-Lys (trnK-UUU), tRNA-Ser (trnS-GCU), and tRNA-Met (trnM-CAU) genes, complete sequence; beta'' subunit of RNA polymerase (rpoC2), ribosomal protein S3 (rps3), cytochrome b6/f complex subunit V (petG), photosystem II protein L (psbL), photosystem II protein VI (psbF), ATP synthase CF0 C subunit (atpH), ATP synthase CF0 B subunit (atpF), P700 apoprotein A2 of photosystem I (psaB), CF1 alpha subunit of ATP synthase (atpA), and photosystem II protein I (psbI) genes, complete cds; tRNA-Ser (trnS-UGA) gene, complete sequence; ribosomal protein L20 (rpl20) gene, complete cds; ribosomal protein L32 (rpl32) gene, partial cds; tRNA-Val (trnV-UAC), tRNA-Pro (trnP-UGG), and tRNA-His (trnH-GUG) genes, complete sequence; CP43 chlorophyll apoprotein of photosystem II (psbC), hypothetical protein, beta' subunit of RNA polymerase (rpoC1), apocytochrome f of cytochrome b6/f complex (petA), and cytochrome b6/f complex subunit 4 (petD) genes, complete cds; tRNA-Arg (trnR-UCU) and tRNA-Thr (trnT-UGU) genes, complete sequence; hypothetical protein, hypothetical trimeric dUTPase, D2 reaction center protein of photosystem II (psbD), and elongation factor Tu (tufA) genes, complete cds; tRNA-Glu (trnE-UUC), tRNA-Met (trnM-CAU), and tRNA-Asn (trnN-GUU) genes, complete sequence; subunit VI of cytochrome b6/f complex (petL) gene, complete cds; subunit VII of photosystem I (psaC) gene, exon 2 and partial cds; tRNA-Phe (trnF-GAA) gene, complete sequence; ribosomal protein L36 (rpl36) and cytochrome b6 (petB) genes, complete cds; 16S small subunit ribosomal RNA (rrs) gene, complete sequence; hypothetical protein (rrs) gene, complete cds; and tRNA-Ile (trnI-GAU), tRNA-Ala (trnA-UGC), large subunit ribosomal RNA (rrL), and 5S ribosomal RNA (rrn5) genes, complete sequence; chloroplast", "blastn", "7490", "289", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Chlorophyceae", "Chlamydomonadales", "Chlorococcaceae", "Borodinellopsis", "Borodinellopsis texensis"], [5161395, "PRJEB41113_S_NODE_14585_length_151_cov_2.561404_g14576_i0", "PRJEB41113", "14585", "151", "2.561404", "3.86772004", "Coccomyxa subellipsoidea", "248742", "Plants", "Plants", "58.4", "2.65e-4", "", "NTclustered", "gi|1870286304|gb|AC279733.1|", "574566", "g14576", "i0", "92.5", "0.754966887417219", "40", "3", "26", "0", "112", "151", "6030", "5991", "Coccomyxa subellipsoidea C-169 clone FAHX245-O08, complete sequence", "blastn", "114", "58.4", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Trebouxiophyceae", null, "Coccomyxaceae", "Coccomyxa", "Coccomyxa subellipsoidea"], [8986226, "PRJEB41113_S_NODE_15308_length_150_cov_2.522124_g15299_i0", "PRJEB41113", "15308", "150", "2.522124", "3.783186", "Stichococcus bacillaris", "37433", "Plants", "Plants", "278", "1.85e-70", "", "NTclustered", "gi|723457333|ref|NC_025527.1|", "37433", "g15299", "i0", "100", "1", "150", "0", "100", "0", "1", "150", "76582", "76433", "Stichococcus bacillaris culture-collection UTEX:176 chloroplast, complete genome", "blastn", "150", "278", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Trebouxiophyceae", "Prasiolales", "Stichococcaceae", "Stichococcus", "Stichococcus bacillaris"], [10261980, "PRJEB41113_S_NODE_6509_length_177_cov_3.928571_g6500_i0", "PRJEB41113", "6509", "177", "3.928571", "6.95357067", "Ulva compressa", "63659", "Plants", "Plants", "156", "1.11e-33", "", "NTclustered", "gi|2043344467|gb|MW353781.1|", "63659", "g6500", "i0", "84.472", "103.378531073446", "161", "22", "91", "3", "6", "166", "69521", "69364", "Ulva compressa isolate Uco3 plastid, complete genome", "blastn", "18298", "156", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Ulvophyceae", "Ulvales", "Ulvaceae", "Ulva", "Ulva compressa"], [11537293, "PRJEB41113_S_NODE_12170_length_154_cov_8.666667_g12161_i0", "PRJEB41113", "12170", "154", "8.666667", "13.34666718", "Chloroidium sp. KL-2023a", "3031248", "Plants", "Plants", "224", "2.5299999999999994e-54", "", "NTclustered", "gi|2450595352|gb|ON986219.1|", "3031248", "g12161", "i0", "96.992", "8.7012987012987", "133", "4", "86", "0", "3", "135", "219933", "220065", "Chloroidium sp. KL-2023a clone 2023 chloroplast, complete genome", "blastn", "1340", "224", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Trebouxiophyceae", "Watanabeales", "Watanabeaceae", "Chloroidium", "Chloroidium sp. KL-2023a"], [19184627, "PRJEB41113_S_NODE_1736_length_234_cov_2.137056_g1727_i0", "PRJEB41113", "1736", "234", "2.137056", "5.00071104", "Coccomyxa subellipsoidea C-169", "574566", "Plants", "Plants", "105", "2.64e-24", "", "NR", "XP_005643606.1", "574566", "g1727", "i0", "66.3", "1.02564102564103", "80", "24", "98.7", "1", "231", "1", "527", "606", "XP_005643606.1 vacuolar ATP synthase, subunit A [Coccomyxa subellipsoidea C-169]", "diamond", "240", "105", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Trebouxiophyceae", null, "Coccomyxaceae", "Coccomyxa", "Coccomyxa subellipsoidea"], [20459946, "PRJEB41113_S_NODE_11697_length_155_cov_4.220339_g11688_i0", "PRJEB41113", "11697", "155", "4.220339", "6.54152545", "Pseudochlorella signiensis", "173497", "Plants", "Plants", "226", "7.1e-55", "", "NTclustered", "gi|2724824453|gb|PP746560.1|", "173497", "g11688", "i0", "95.714", "5.89677419354839", "140", "6", "90", "0", "16", "155", "30083", "29944", "Pseudochlorella signiensis culture SAG:7.90 mitochondrion, complete genome", "blastn", "914", "226", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Trebouxiophyceae", "Chlorellales", "Chlorellaceae", "Pseudochlorella", "Pseudochlorella signiensis"], [20459970, "PRJEB41113_S_NODE_2057_length_225_cov_4.500000_g2048_i0", "PRJEB41113", "2057", "225", "4.5", "10.125", "Diplosphaera sundellii", "3135960", "Plants", "Plants", "174", "4.09e-39", "", "NTclustered", "gi|2878821371|gb|PQ563290.1|", "3135960", "g2048", "i0", "89.286", "54.92", "140", "13", "62", "2", "1", "139", "8174", "8312", "Diplosphaera sundellii mitochondrion, complete genome", "blastn", "12357", "174", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Trebouxiophyceae", "Prasiolales", "Stichococcaceae", "Diplosphaera", "Diplosphaera sundellii"], [22666756, "PRJEB41113_S_NODE_5318_length_185_cov_3.736486_g5309_i0", "PRJEB41113", "5318", "185", "3.736486", "6.9124991", "Trebouxia", "13786", "Plants", "Plants", "289", "1.11e-73", "", "NTclustered", "gi|1750939486|gb|MH917293.1|", "1825957", "g5309", "i0", "100", "90.3297297297297", "156", "0", "84", "0", "19", "174", "19304", "19149", "Trebouxia sp. TR9 mitochondrion, complete genome", "blastn", "16711", "289", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Trebouxiophyceae", "Trebouxiales", "Trebouxiaceae", "Trebouxia", "Trebouxia lynnae"], [23011149, "PRJEB41113_S_NODE_959_length_264_cov_8.136564_g950_i0", "PRJEB41113", "959", "264", "8.136564", "21.48052896", "Nannochloris normandinae", "926285", "Plants", "Plants", "453", "5.66e-123", "", "NTclustered", "gi|922575245|gb|JQ921007.1|", "926285", "g950", "i0", "97.736", "96.7537878787879", "265", "3", "99", "3", "2", "264", "565", "828", "Nannochloris normandinae strain SAG 9.82 23S large subunit ribosomal RNA gene, partial sequence; chloroplast", "blastn", "25543", "453", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Trebouxiophyceae", "Chlorellales", "Chlorellaceae", "Nannochloris", "Nannochloris normandinae"], [27437885, "PRJEB41113_S_NODE_2043_length_225_cov_13.265957_g2034_i0", "PRJEB41113", "2043", "225", "13.265957", "29.84840325", "Eukaryota", "2759", "Plants", "Plants", "67.4", "1.14e-11", "", "NR", "XP_011399104.1", "3075", "g2034", "i0", "87.5", "14.9333333333333", "32", "4", "42.7", "0", "2", "97", "145", "176", "XP_011399104.1 40S ribosomal protein S9-1 [Auxenochlorella protothecoides]", "diamond", "3360", "67.4", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Trebouxiophyceae", "Chlorellales", "Chlorellaceae", "Auxenochlorella", "Auxenochlorella protothecoides"], [28321656, "PRJEB41113_S_NODE_13826_length_152_cov_1.991304_g13817_i0", "PRJEB41113", "13826", "152", "1.991304", "3.02678208", "root", "1", "Root_unresolved", "Root_unresolved", "40.8", "0.0162", "", "NR", "BBD21622.1", "1449749", "g13817", "i0", "47.8", "1.69736842105263", "46", "24", "90.8", "0", "146", "9", "2", "47", "BBD21622.1 30S ribosomal protein S14 [Poropsis sp. ID1_4]", "diamond", "258", "40.8", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Ulvophyceae", "Bryopsidales", null, "Poropsis", "Poropsis sp. ID1_4"], [29907212, "PRJEB41113_S_NODE_8231_length_167_cov_2.907692_g8222_i0", "PRJEB41113", "8231", "167", "2.907692", "4.85584564", "Scenedesmus sp. NREL 46B-D3", "2650976", "Plants", "Plants", "72.8", "1.24e-14", "", "NR", "KAF6258266.1", "2650976", "g8222", "i0", "65.5", "0.988023952095808", "55", "19", "98.8", "0", "165", "1", "57", "111", "KAF6258266.1 ribosomal protein L14 component of cytosolic 80S ribosome and 60S large subunit [Scenedesmus sp. NREL 46B-D3]", "diamond", "165", "72.8", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Chlorophyceae", "Sphaeropleales", "Scenedesmaceae", "Scenedesmus", "Scenedesmus sp. NREL 46B-D3"], [30002021, "PRJEB41113_S_NODE_9611_length_161_cov_2.806452_g9602_i0", "PRJEB41113", "9611", "161", "2.806452", "4.51838772", "Chlamydomonas eustigma", "1157962", "Plants", "Plants", "48.5", "8.05e-5", "", "NR", "GAX80709.1", "1157962", "g9602", "i0", "63.9", "0.670807453416149", "36", "13", "67.1", "0", "160", "53", "175", "210", "GAX80709.1 hypothetical protein CEUSTIGMA_g8144.t1 [Chlamydomonas eustigma]", "diamond", "108", "48.5", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Chlorophyceae", "Chlamydomonadales", "Chlamydomonadaceae", "Chlamydomonas", "Chlamydomonas eustigma"], [31834904, "PRJEB41113_S_NODE_3577_length_200_cov_1.944785_g3568_i0", "PRJEB41113", "3577", "200", "1.944785", "3.88957", "Rhexinema sarcinoideum", "43261", "Plants", "Plants", "45.8", "0.00173", "", "NR", "AOC61498.1", "43261", "g3568", "i0", "44.6", "1.935", "65", "25", "97.5", "2", "1", "195", "501", "554", "AOC61498.1 NADH dehydrogenase subunit 2 [Rhexinema sarcinoideum]", "diamond", "387", "45.8", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Ulvophyceae", "Ulotrichales", "Helicodictyaceae", "Rhexinema", "Rhexinema sarcinoideum"], [32625684, "PRJEB41113_S_NODE_2500_length_216_cov_2.860335_g2491_i0", "PRJEB41113", "2500", "216", "2.860335", "6.1783236", "Trebouxia sp. 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C0009 RCD-2024"]], "truncated": false, "filtered_table_rows_count": 19, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"bioproject\" = :p0 and \"tax_clade\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "PRJEB41113", "p1": "core chlorophytes", "p2": "Chlorophyta"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_clade=core+chlorophytes&tax_phylum=Chlorophyta", "results": [{"value": "PRJEB41113", "label": "PRJEB41113", "count": 19, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?tax_clade=core+chlorophytes&tax_phylum=Chlorophyta", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_clade=core+chlorophytes&tax_phylum=Chlorophyta", "results": [{"value": "blastn", "label": "blastn", "count": 12, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_clade=core+chlorophytes&tax_phylum=Chlorophyta&analysis=blastn", "selected": false}, {"value": "diamond", "label": "diamond", "count": 7, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_clade=core+chlorophytes&tax_phylum=Chlorophyta&analysis=diamond", "selected": false}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_clade=core+chlorophytes&tax_phylum=Chlorophyta", "results": [{"value": "Eukaryota", "label": "Eukaryota", "count": 19, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_clade=core+chlorophytes&tax_phylum=Chlorophyta&tax_superkingdom=Eukaryota", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_clade=core+chlorophytes&tax_phylum=Chlorophyta", "results": [{"value": "core chlorophytes", "label": "core chlorophytes", "count": 19, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_phylum=Chlorophyta", "selected": true}], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_clade=core+chlorophytes&tax_phylum=Chlorophyta", "results": [{"value": "Viridiplantae", "label": "Viridiplantae", "count": 19, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_clade=core+chlorophytes&tax_phylum=Chlorophyta&tax_kingdom=Viridiplantae", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_clade=core+chlorophytes&tax_phylum=Chlorophyta", "results": [{"value": "Chlorophyta", "label": "Chlorophyta", "count": 19, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJEB41113&tax_clade=core+chlorophytes", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 183.95185499684885}