{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"diamond\", bioproject = \"PRJNA929952\" and tax_phylum = \"Pseudomonadota\"", "rows": [[3460067, "PRJNA929952_P_NODE_6743_length_472_cov_3.309255_g4348_i1", "PRJNA929952", "6743", "472", "3.309255", "15.6196836", "Neisseriales", "206351", "Bacteria", "Bacteria", "100", "1.0100000000000002e-21", "", "NR", "WP_022653425.1", "190", "g4348", "i1", "47.6", "1.29661016949153", "103", "44", "65.5", "3", "345", "37", "264", "356", "WP_022653425.1 porin [Aquaspirillum serpens]", "diamond", "612", "100", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Betaproteobacteria", "Neisseriales", "Aquaspirillaceae", "Aquaspirillum", "Aquaspirillum serpens"], [3460073, "PRJNA929952_P_NODE_8683_length_403_cov_5.050802_g7423_i0", "PRJNA929952", "8683", "403", "5.050802", "20.35473206", "Ectopseudomonas mendocina", "300", "Bacteria", "Bacteria", "179", "1.0299999999999995e-55", "", 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"327", "181", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Aeromonadales", "Aeromonadaceae", "Aeromonas", null], [28730341, "PRJNA929952_P_NODE_9347_length_385_cov_3.398876_g8073_i0", "PRJNA929952", "9347", "385", "3.398876", "13.0856726", "Aeromonas", "642", "Bacteria", "Bacteria", "104", "6.270000000000001e-27", "", "NR", "WP_193861208.1", "642", "g8073", "i0", "100", "0.405194805194805", "52", "0", "40.5", "0", "196", "351", "1", "52", "WP_193861208.1 MULTISPECIES: hypothetical protein [Aeromonas]", "diamond", "156", "104", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Aeromonadales", "Aeromonadaceae", "Aeromonas", null], [28761773, "PRJNA929952_P_NODE_10367_length_356_cov_4.428135_g9079_i0", "PRJNA929952", "10367", "356", "4.428135", "15.7641606", "Aeromonas veronii", "654", "Bacteria", "Bacteria", "197", "5.61e-63", "", "NR", "WP_193861193.1", "654", "g9079", "i0", "92.5", "0.901685393258427", "107", "8", 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"130", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Aeromonadales", "Aeromonadaceae", "Aeromonas", null], [31605222, "PRJNA929952_P_NODE_10156_length_362_cov_2.801802_g8873_i0", "PRJNA929952", "10156", "362", "2.801802", "10.14252324", "Aeromonas", "642", "Bacteria", "Bacteria", "225", "8.67e-74", "", "NR", "WP_362781805.1", "642", "g8873", "i0", "100", "0.994475138121547", "120", "0", "99.4", "0", "1", "360", "11", "130", "WP_362781805.1 MULTISPECIES: H-NS family nucleoid-associated regulatory protein [Aeromonas]", "diamond", "360", "225", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Aeromonadales", "Aeromonadaceae", "Aeromonas", null], [31636710, "PRJNA929952_P_NODE_23896_length_159_cov_1.861538_g22602_i0", "PRJNA929952", "23896", "159", "1.861538", "2.95984542", "Aeromonas veronii", "654", "Bacteria", "Bacteria", "117", "9.44e-31", "", "NR", "WP_236349790.1", "654", "g22602", "i0", "100", "3", "53", "0", "100", "0", "159", "1", "79", "131", "WP_236349790.1 hypothetical protein [Aeromonas veronii]", "diamond", "477", "117", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Aeromonadales", "Aeromonadaceae", "Aeromonas", "Aeromonas veronii"], [31858097, "PRJNA929952_P_NODE_6397_length_486_cov_9.328228_g5255_i0", "PRJNA929952", "6397", "486", "9.328228", "45.33518808", "Sphingomicrobium sp.", "1940456", "Bacteria", "Bacteria", "45.4", "0.0379", "", "NR", "HVL78714.1", "1940456", "g5255", "i0", "33.3", "0.666666666666667", "108", "57", "61.1", "3", "78", "374", "53", "154", "HVL78714.1 FecR domain-containing protein [Sphingomicrobium sp.]", "diamond", "324", "45.4", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Alphaproteobacteria", "Sphingomonadales", "Sphingomonadaceae", "Sphingomicrobium", "Sphingomicrobium sp."], [31953036, "PRJNA929952_P_NODE_24157_length_156_cov_2.803150_g22863_i0", "PRJNA929952", "24157", "156", "2.80315", "4.372914", "Klebsiella pneumoniae", "573", "Bacteria", "Bacteria", "48.5", "8.18e-6", "", "NR", "WP_416515521.1", "573", "g22863", "i0", "63.9", "0.692307692307692", "36", "13", "69.2", "0", "108", "1", "25", "60", "WP_416515521.1 hypothetical protein, partial [Klebsiella pneumoniae]", "diamond", "108", "48.5", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Enterobacterales", "Enterobacteriaceae", "Klebsiella", "Klebsiella pneumoniae"], [31953038, "PRJNA929952_P_NODE_6777_length_471_cov_2.110860_g5601_i0", "PRJNA929952", "6777", "471", "2.11086", "9.9421506", "Aeromonas", "642", "Bacteria", "Bacteria", "140", "4.68e-37", "", "NR", "WP_319895168.1", "642", "g5601", "i0", "51.4", "1.11464968152866", "175", "57", "100", "3", "471", "1", "131", "295", "WP_319895168.1 MULTISPECIES: replication initiation protein [Aeromonas]", "diamond", "525", "140", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Aeromonadales", "Aeromonadaceae", "Aeromonas", null], [32174796, "PRJNA929952_P_NODE_6098_length_500_cov_7.861996_g4984_i0", "PRJNA929952", "6098", "500", "7.861996", "39.30998", "Aeromonas veronii", "654", "Bacteria", "Bacteria", "284", "6.249999999999998e-96", "", "NR", "WP_199416285.1", "654", "g4984", "i0", "98.7", "0.918", "153", "2", "91.8", "0", "484", "26", "1", "153", "WP_199416285.1 hypothetical protein [Aeromonas veronii]", "diamond", "459", "284", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Aeromonadales", "Aeromonadaceae", "Aeromonas", "Aeromonas veronii"], [32427786, "PRJNA929952_P_NODE_14599_length_273_cov_1.799180_g13305_i0", "PRJNA929952", "14599", "273", "1.79918", "4.9117614", "Aeromonas caviae", "648", "Bacteria", "Bacteria", "78.6", "9.18e-15", "", "NR", "WP_301480134.1", "648", "g13305", "i0", "97.4", "0.417582417582418", "38", "1", "41.8", "0", "1", "114", "305", "342", "WP_301480134.1 type II secretion system F family protein [Aeromonas caviae]", "diamond", "114", "78.6", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Aeromonadales", "Aeromonadaceae", "Aeromonas", "Aeromonas caviae"], [32837635, "PRJNA929952_P_NODE_10260_length_359_cov_3.748485_g8976_i0", "PRJNA929952", "10260", "359", "3.748485", "13.45706115", "Shewanella sp. SNU WT4", "2590015", "Bacteria", "Bacteria", "46.6", "2.51e-4", "", "NR", "WP_276613173.1", "2590015", "g8976", "i0", "63.3", "0.250696378830084", "30", "11", "25.1", "0", "93", "4", "8", "37", "WP_276613173.1 hypothetical protein [Shewanella sp. SNU WT4]", "diamond", "90", "46.6", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Alteromonadales", "Shewanellaceae", "Shewanella", "Shewanella sp. SNU WT4"]], "truncated": false, "filtered_table_rows_count": 25, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "diamond", "p1": "PRJNA929952", "p2": "Pseudomonadota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA929952&tax_phylum=Pseudomonadota", "results": [{"value": "PRJNA929952", "label": "PRJNA929952", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&tax_phylum=Pseudomonadota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA929952&tax_phylum=Pseudomonadota", "results": [{"value": "diamond", "label": "diamond", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA929952&tax_phylum=Pseudomonadota", "selected": true}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA929952&tax_phylum=Pseudomonadota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA929952&tax_phylum=Pseudomonadota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA929952&tax_phylum=Pseudomonadota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA929952&tax_phylum=Pseudomonadota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA929952&tax_phylum=Pseudomonadota&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA929952&tax_phylum=Pseudomonadota", "results": [{"value": "Pseudomonadota", "label": "Pseudomonadota", "count": 25, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA929952", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 291.67438000013135}