{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"diamond\", bioproject = \"PRJNA900028\" and tax_phylum = \"Campylobacterota\"", "rows": [[23827037, "PRJNA900028_P_NODE_15819_length_294_cov_1.355102_g15070_i0", "PRJNA900028", "15819", "294", "1.355102", "3.98399988", "Bacteria", "2", "Bacteria", "Bacteria", "134", "8.819999999999999e-37", "", "NR", "WP_285658688.1", "56877", "g15070", "i0", "80.9", "5.44897959183673", "89", "17", "90.8", "0", "269", "3", "47", "135", "WP_285658688.1 sensor histidine kinase, partial [Helicobacter bizzozeronii]", "diamond", "1602", "134", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter bizzozeronii"], [26683480, "PRJNA900028_P_NODE_6481_length_423_cov_1.620321_g5736_i0", "PRJNA900028", "6481", "423", "1.620321", "6.85395783", "Bacteria", "2", "Bacteria", "Bacteria", "229", 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"196", "MDO9305623.1 response regulator [Sulfuricurvum sp.]", "diamond", "2577", "94.7", "0.996832101372756", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Sulfurimonadaceae", "Sulfuricurvum", "Sulfuricurvum sp."], [31200435, "PRJNA900028_P_NODE_93755_length_179_cov_0.984615_g93006_i0", "PRJNA900028", "93755", "179", "0.984615", "1.76246085", "root", "1", "Root_unresolved", "Root_unresolved", "54.3", "2.97e-7", "", "NR", "GAA8684133.1", "210", "g93006", "i0", "86.2", "4.29050279329609", "29", "4", "48.6", "0", "102", "16", "8", "36", "GAA8684133.1 hypothetical protein Kyoto145A_0980 [Helicobacter pylori]", "diamond", "768", "54.7", "0.992687385740402", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [31699331, "PRJNA900028_P_NODE_199497_length_151_cov_2.980392_g198748_i0", "PRJNA900028", "199497", "151", "2.980392", "4.50039192", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "42.7", "0.00276", "", "NR", "GAA9129177.1", "210", "g198748", "i0", "77.3", "1.74834437086093", "22", "5", "43.7", "0", "3", "68", "41", "62", "GAA9129177.1 hypothetical protein Kyoto190A_1890 [Helicobacter pylori]", "diamond", "264", "42.7", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [31825635, "PRJNA900028_P_NODE_166277_length_163_cov_0.894737_g165528_i0", "PRJNA900028", "166277", "163", "0.894737", "1.45842131", "Campylobacter rectus", "203", "Bacteria", "Bacteria", "107", "4.47e-26", "", "NR", "WP_314701695.1", "203", "g165528", "i0", "100", "0.975460122699387", "53", "0", "97.5", "0", "3", "161", "131", "183", "WP_314701695.1 RAMP superfamily CRISPR-associated protein [Campylobacter rectus]", "diamond", "159", "107", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter rectus"], [32742655, "PRJNA900028_P_NODE_23340_length_259_cov_0.838095_g22591_i0", "PRJNA900028", "23340", "259", "0.838095", "2.17066605", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "70.1", "1.11e-13", "", "NR", "GAA9176533.1", "210", "g22591", "i0", "66.7", "1.06563706563707", "48", "16", "55.6", "0", "1", "144", "8", "55", "GAA9176533.1 hypothetical protein Kyoto193A_0850 [Helicobacter pylori]", "diamond", "276", "70.1", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [32773920, "PRJNA900028_P_NODE_61620_length_195_cov_1.746575_g60871_i0", "PRJNA900028", "61620", "195", "1.746575", "3.40582125", "Campylobacter ureolyticus", "827", "Bacteria", "Bacteria", "77.8", "1.48e-15", "", "NR", "WP_016646089.1", "827", "g60871", "i0", "100", "0.569230769230769", "37", "0", "56.9", "0", "1", "111", "191", "227", "WP_016646089.1 molecular chaperone TorD family protein [Campylobacter ureolyticus]", "diamond", "111", "77.8", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter ureolyticus"]], "truncated": false, "filtered_table_rows_count": 23, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "diamond", "p1": "PRJNA900028", "p2": "Campylobacterota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA900028&tax_phylum=Campylobacterota", "results": [{"value": "PRJNA900028", "label": "PRJNA900028", "count": 23, 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"http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA900028&tax_phylum=Campylobacterota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA900028&tax_phylum=Campylobacterota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA900028&tax_phylum=Campylobacterota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 23, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA900028&tax_phylum=Campylobacterota&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA900028&tax_phylum=Campylobacterota", "results": [{"value": "Campylobacterota", "label": "Campylobacterota", "count": 23, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA900028", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 216.2965050083585}