{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"diamond\", bioproject = \"PRJNA849172\" and tax_phylum = \"Methanobacteriota\"", "rows": [[18688431, "PRJNA849172_P_NODE_70955_length_268_cov_5.497436_g70595_i0", "PRJNA849172", "70955", "268", "5.497436", "14.73312848", "root", "1", "Root_unresolved", "Root_unresolved", "66.2", "2.74e-10", "", "NR", "WP_052279112.1", "2214", "g70595", "i0", "47.7", "2.95522388059702", "88", "44", "98.5", "1", "268", "5", "239", "324", "WP_052279112.1 PAS domain S-box protein [Methanosarcina acetivorans]", "diamond", "792", "66.2", "1", "Archaea", "Stenosarchaea group", "Methanobacteriati", "Methanobacteriota", "Methanomicrobia", "Methanosarcinales", "Methanosarcinaceae", "Methanosarcina", "Methanosarcina acetivorans"], [19961813, "PRJNA849172_P_NODE_146076_length_201_cov_4.500000_g145716_i0", "PRJNA849172", "146076", "201", "4.5", "9.045", "Halococcus sediminicola", "1264579", "Archaea", "Archaea", "115", "5.430000000000001e-29", "", "NR", "WP_154019981.1", "1264579", "g145716", "i0", "90.2", "0.91044776119403", "61", "6", "91", "0", "200", "18", "111", "171", "WP_154019981.1 IS630 family transposase [Halococcus sediminicola]", "diamond", "183", "115", "1", "Archaea", "Stenosarchaea group", "Methanobacteriati", "Methanobacteriota", "Halobacteria", "Halobacteriales", "Halococcaceae", "Halococcus", "Halococcus sediminicola"], [22512570, "PRJNA849172_P_NODE_24458_length_415_cov_23.581871_g24099_i0", "PRJNA849172", "24458", "415", "23.581871", "97.86476465", "Archaea", "2157", "Archaea", "Archaea", "82.4", "3.32e-15", "", "NR", "OGS43500.1", "1797977", "g24099", "i0", "39.4", "2.66746987951807", "127", "69", "86.7", "3", "411", "52", "464", "589", "OGS43500.1 MAG: hypothetical protein A3K76_00015 [Euryarchaeota archaeon RBG_13_57_23]", "diamond", "1107", "83.2", "0.990384615384615", "Archaea", null, "Methanobacteriati", "Methanobacteriota", null, null, null, null, "Euryarchaeota archaeon RBG_13_57_23"], [26905090, "PRJNA849172_P_NODE_82941_length_257_cov_2.255435_g82581_i0", "PRJNA849172", "82941", "257", "2.255435", "5.79646795", "root", "1", "Root_unresolved", "Root_unresolved", "66.6", "1.71e-10", "", "NR", "MCX8207589.1", "90426", "g82581", "i0", "36.5", "5.96498054474708", "85", "54", "99.2", "0", "257", "3", "293", "377", "MCX8207589.1 PAS domain S-box protein [Methanothrix sp.]", "diamond", "1533", "66.6", "1", "Archaea", "Stenosarchaea group", "Methanobacteriati", "Methanobacteriota", "Methanomicrobia", "Methanotrichales", "Methanotrichaceae", "Methanothrix", "Methanothrix sp."], [27023242, "PRJNA849172_P_NODE_89562_length_252_cov_1.083799_g89202_i0", "PRJNA849172", "89562", "252", "1.083799", "2.73117348", "Halococcus salifodinae", "36738", "Archaea", "Archaea", "51.6", "3.25e-5", "", "NR", "WP_241430264.1", "36738", "g89202", "i0", "60", "0.833333333333333", "35", "14", "41.7", "0", "252", "148", "954", "988", "WP_241430264.1 VWA domain-containing protein [Halococcus salifodinae]", "diamond", "210", "51.6", "1", "Archaea", "Stenosarchaea group", "Methanobacteriati", "Methanobacteriota", "Halobacteria", "Halobacteriales", "Halococcaceae", "Halococcus", "Halococcus salifodinae"], [27781522, "PRJNA849172_P_NODE_59264_length_282_cov_1.712919_g58904_i0", "PRJNA849172", "59264", "282", "1.712919", "4.83043158", "Halococcus thailandensis", "335952", "Archaea", "Archaea", "161", "5.15e-44", "", "NR", "WP_241431201.1", "335952", "g58904", "i0", "86.5", "1.8936170212766", "89", "12", "94.7", "0", "269", "3", "34", "122", "WP_241431201.1 carboxypeptidase-like regulatory domain-containing protein [Halococcus thailandensis]", "diamond", "534", "161", "1", "Archaea", "Stenosarchaea group", "Methanobacteriati", "Methanobacteriota", "Halobacteria", "Halobacteriales", "Halococcaceae", "Halococcus", "Halococcus thailandensis"], [27947631, "PRJNA849172_P_NODE_114505_length_236_cov_6.453988_g114145_i0", "PRJNA849172", "114505", "236", "6.453988", "15.23141168", "Halococcus", "2249", "Archaea", "Archaea", "54.7", "6.69e-7", "", "NR", "PSQ64376.1", "1919209", "g114145", "i0", "73.2", "4.71610169491525", "41", "11", "52.1", "0", "8", "130", "129", "169", "PSQ64376.1 MAG: TspO protein [Halobacteriales archaeon SW_9_67_24]", "diamond", "1113", "55.1", "0.992740471869329", "Archaea", "Stenosarchaea group", "Methanobacteriati", "Methanobacteriota", "Halobacteria", "Halobacteriales", null, null, "Halobacteriales archaeon SW_9_67_24"], [28547751, "PRJNA849172_P_NODE_69827_length_270_cov_1.467005_g69467_i0", "PRJNA849172", "69827", "270", "1.467005", "3.9609135", "Methanomada group", "2283794", "Archaea", "Archaea", "52.8", "3.63e-6", "", "NR", "MEN6292523.1", "2164", "g69467", "i0", "37.1", "1.33333333333333", "62", "39", "68.9", "0", "83", "268", "1", "62", "MEN6292523.1 hypothetical protein [Methanobacterium sp.]", "diamond", "360", "53.1", "0.994350282485876", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobacterium", "Methanobacterium sp."], [29233894, "PRJNA849172_P_NODE_34889_length_348_cov_3.323636_g34530_i0", "PRJNA849172", "34889", "348", "3.323636", "11.56625328", "Methanobacteriota archaeon", "2026739", "Archaea", "Archaea", "94", "1.3e-19", "", "NR", "MAD73129.1", "2026739", "g34530", "i0", "90.4", "0.448275862068966", "52", "5", "44.8", "0", "158", "3", "396", "447", "MAD73129.1 hypothetical protein [Methanobacteriota archaeon]", "diamond", "156", "94", "1", "Archaea", null, "Methanobacteriati", "Methanobacteriota", null, null, null, null, "Methanobacteriota archaeon"], [29589093, "PRJNA849172_P_NODE_101370_length_245_cov_3.953488_g101010_i0", "PRJNA849172", "101370", "245", "3.953488", "9.6860456", "root", "1", "Root_unresolved", "Root_unresolved", "56.6", "5.04e-7", "", "NR", "WP_292345499.1", "1811680", "g101010", "i0", "70", "3.64897959183673", "50", "14", "61.2", "1", "231", "82", "215", "263", "WP_292345499.1 PKD domain-containing protein [Methanoregula sp. PtaB.Bin085]", "diamond", "894", "56.6", "1", "Archaea", "Stenosarchaea group", "Methanobacteriati", "Methanobacteriota", "Methanomicrobia", "Methanomicrobiales", "Methanoregulaceae", "Methanoregula", "Methanoregula sp. PtaB.Bin085"], [30497302, "PRJNA849172_P_NODE_55553_length_287_cov_1.448598_g55193_i0", "PRJNA849172", "55553", "287", "1.448598", "4.15747626", "Methanosarcina sp.", "2213", "Archaea", "Archaea", "141", "1.96e-40", "", "NR", "HET8689243.1", "2213", "g55193", "i0", "71.3", "0.982578397212544", "94", "27", "98.3", "0", "287", "6", "68", "161", "HET8689243.1 hypothetical protein [Methanosarcina sp.]", "diamond", "282", "141", "1", "Archaea", "Stenosarchaea group", "Methanobacteriati", "Methanobacteriota", "Methanomicrobia", "Methanosarcinales", "Methanosarcinaceae", "Methanosarcina", "Methanosarcina sp."], [30663480, "PRJNA849172_P_NODE_93333_length_250_cov_0.875706_g92973_i0", "PRJNA849172", "93333", "250", "0.875706", "2.189265", "root", "1", "Root_unresolved", "Root_unresolved", "117", "6.28e-30", "", "NR", "MBR3140321.1", "66852", "g92973", "i0", "67.5", "15.936", "83", "27", "99.6", "0", "2", "250", "155", "237", "MBR3140321.1 glucose-1-phosphate thymidylyltransferase RfbA [Methanobrevibacter sp.]", "diamond", "3984", "118", "0.991525423728814", "Archaea", "Methanomada group", "Methanobacteriati", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "Methanobrevibacter sp."], [31517087, "PRJNA849172_P_NODE_82996_length_257_cov_2.108696_g82636_i0", "PRJNA849172", "82996", "257", "2.108696", "5.41934872", "Halococcus", "2249", "Archaea", "Archaea", "120", "2.78e-29", "", "NR", "WP_256686162.1", "224402", "g82636", "i0", "69.4", "1.98443579766537", "85", "26", "99.2", "0", "256", "2", "653", "737", "WP_256686162.1 ABC transporter permease [Halococcus qingdaonensis]", "diamond", "510", "120", "1", "Archaea", "Stenosarchaea group", "Methanobacteriati", "Methanobacteriota", "Halobacteria", "Halobacteriales", "Halococcaceae", "Halococcus", "Halococcus qingdaonensis"], [32077888, "PRJNA849172_P_NODE_101838_length_245_cov_2.575581_g101478_i0", "PRJNA849172", "101838", "245", "2.575581", "6.31017345", "Methanosarcina sp.", "2213", "Archaea", "Archaea", "73.6", "3.28e-14", "", "NR", "HET8688272.1", "2213", "g101478", "i0", "64", "0.612244897959184", "50", "18", "61.2", "0", "95", "244", "3", "52", "HET8688272.1 protein-tyrosine phosphatase family protein [Methanosarcina sp.]", "diamond", "150", "73.6", "1", "Archaea", "Stenosarchaea group", "Methanobacteriati", "Methanobacteriota", "Methanomicrobia", "Methanosarcinales", "Methanosarcinaceae", "Methanosarcina", "Methanosarcina sp."], [32141314, "PRJNA849172_P_NODE_30098_length_374_cov_2.956811_g29739_i0", "PRJNA849172", "30098", "374", "2.956811", "11.05847314", "Methanobacteriota archaeon", "2026739", "Archaea", "Archaea", "125", "1.45e-30", "", "NR", "MAD73129.1", "2026739", "g29739", "i0", "79.2", "0.770053475935829", "96", "15", "77", "3", "374", "87", "448", "538", "MAD73129.1 hypothetical protein [Methanobacteriota archaeon]", "diamond", "288", "125", "1", "Archaea", null, "Methanobacteriati", "Methanobacteriota", null, null, null, null, "Methanobacteriota archaeon"], [32521195, "PRJNA849172_P_NODE_122099_length_230_cov_3.343949_g121739_i0", "PRJNA849172", "122099", "230", "3.343949", "7.6910827", "Thermococcus sp. LS2", "1638260", "Archaea", "Archaea", "46.6", "3.04e-4", "", "NR", "WP_167916020.1", "1638260", "g121739", "i0", "70.4", "1.40869565217391", "27", "8", "35.2", "0", "145", "225", "4", "30", "WP_167916020.1 IS607 family transposase, partial [Thermococcus sp. LS2]", "diamond", "324", "46.6", "1", "Archaea", null, "Methanobacteriati", "Methanobacteriota", "Thermococci", "Thermococcales", "Thermococcaceae", "Thermococcus", "Thermococcus sp. LS2"], [32772977, "PRJNA849172_P_NODE_62540_length_278_cov_1.795122_g62180_i0", "PRJNA849172", "62540", "278", "1.795122", "4.99043916", "Halococcus sp. PRR34", "3020830", "Archaea", "Archaea", "141", "2.17e-39", "", "NR", "WP_273838618.1", "3020830", "g62180", "i0", "94.6", "0.798561151079137", "74", "4", "79.9", "0", "55", "276", "7", "80", "WP_273838618.1 hypothetical protein [Halococcus sp. PRR34]", "diamond", "222", "141", "1", "Archaea", "Stenosarchaea group", "Methanobacteriati", "Methanobacteriota", "Halobacteria", "Halobacteriales", "Halococcaceae", "Halococcus", "Halococcus sp. PRR34"]], "truncated": false, "filtered_table_rows_count": 17, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "diamond", "p1": "PRJNA849172", "p2": "Methanobacteriota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA849172&tax_phylum=Methanobacteriota", "results": [{"value": "PRJNA849172", "label": "PRJNA849172", "count": 17, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&tax_phylum=Methanobacteriota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA849172&tax_phylum=Methanobacteriota", "results": [{"value": "diamond", "label": "diamond", "count": 17, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA849172&tax_phylum=Methanobacteriota", "selected": true}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA849172&tax_phylum=Methanobacteriota", "results": [{"value": "Archaea", "label": "Archaea", "count": 17, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA849172&tax_phylum=Methanobacteriota&tax_superkingdom=Archaea", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA849172&tax_phylum=Methanobacteriota", "results": [{"value": "Stenosarchaea group", "label": "Stenosarchaea group", "count": 11, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA849172&tax_phylum=Methanobacteriota&tax_clade=Stenosarchaea+group", "selected": false}, {"value": "Methanomada group", "label": "Methanomada group", "count": 2, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA849172&tax_phylum=Methanobacteriota&tax_clade=Methanomada+group", "selected": false}], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA849172&tax_phylum=Methanobacteriota", "results": [{"value": "Methanobacteriati", "label": "Methanobacteriati", "count": 17, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA849172&tax_phylum=Methanobacteriota&tax_kingdom=Methanobacteriati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA849172&tax_phylum=Methanobacteriota", "results": [{"value": "Methanobacteriota", "label": "Methanobacteriota", "count": 17, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA849172", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 191.15830599912442}