{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"diamond\", bioproject = \"PRJNA792582\" and tax_phylum = \"Gemmatimonadota\"", "rows": [[2052933, "PRJNA792582_P_NODE_40262_length_277_cov_1.411765_g39448_i0", "PRJNA792582", "40262", "277", "1.411765", "3.91058905", "Gemmatimonadota bacterium", "2026742", "Bacteria", "Bacteria", "141", "1.4e-36", "", "NR", "MBL8995832.1", "2026742", "g39448", "i0", "84.8", "2.98916967509025", "92", "14", "99.6", "0", "2", "277", "285", "376", "MBL8995832.1 serine hydrolase [Gemmatimonadota bacterium]", "diamond", "828", "141", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", null, null, null, null, "Gemmatimonadota bacterium"], [10143917, "PRJNA792582_P_NODE_35488_length_289_cov_3.356481_g34674_i0", "PRJNA792582", "35488", "289", "3.356481", "9.70023009", "Roseisolibacter agri", "2014610", "Bacteria", "Bacteria", "97.4", "2.8400000000000003e-21", "", "NR", "WP_284352341.1", "2014610", "g34674", "i0", "93.9", "0.508650519031142", "49", "3", "50.9", "0", "142", "288", "36", "84", "WP_284352341.1 methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO [Roseisolibacter agri]", "diamond", "147", "97.4", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", "Gemmatimonadia", "Gemmatimonadales", "Gemmatimonadaceae", "Roseisolibacter", "Roseisolibacter agri"], [10981096, "PRJNA792582_P_NODE_51629_length_249_cov_0.875000_g50815_i0", "PRJNA792582", "51629", "249", "0.875", "2.17875", "Gemmatimonadaceae bacterium", "2026741", "Bacteria", "Bacteria", "102", "2.79e-25", "", "NR", "HEU6450968.1", "2026741", "g50815", "i0", "71.2", "2.3855421686747", "66", "19", "79.5", "0", "199", "2", "1", "66", "HEU6450968.1 GNAT family protein [Gemmatimonadaceae bacterium]", "diamond", "594", "102", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", "Gemmatimonadia", "Gemmatimonadales", "Gemmatimonadaceae", null, "Gemmatimonadaceae bacterium"], [13530730, "PRJNA792582_P_NODE_49111_length_252_cov_1.720670_g48297_i0", "PRJNA792582", "49111", "252", "1.72067", "4.3360884", "Bacteria", "2", "Bacteria", "Bacteria", "112", "9.11e-27", "", "NR", "MEO7217680.1", "2026741", "g48297", "i0", "68.7", "6.83333333333333", "83", "26", "98.8", "0", "251", "3", "182", "264", "MEO7217680.1 PBP1A family penicillin-binding protein [Gemmatimonadaceae bacterium]", "diamond", "1722", "112", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", "Gemmatimonadia", "Gemmatimonadales", "Gemmatimonadaceae", null, "Gemmatimonadaceae bacterium"], [17355337, "PRJNA792582_P_NODE_44654_length_265_cov_1.604167_g43840_i0", "PRJNA792582", "44654", "265", "1.604167", "4.25104255", "Gemmatimonadota bacterium", "2026742", "Bacteria", "Bacteria", "172", "1.59e-50", "", "NR", "MBW3570171.1", "2026742", "g43840", "i0", "87.5", "0.99622641509434", "88", "11", "99.6", "0", "265", "2", "167", "254", "MBW3570171.1 glycosyltransferase [Gemmatimonadota bacterium]", "diamond", "264", "172", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", null, null, null, null, "Gemmatimonadota bacterium"], [18628492, "PRJNA792582_P_NODE_35515_length_289_cov_2.560185_g34701_i0", "PRJNA792582", "35515", "289", "2.560185", "7.39893465", "Gemmatirosa sp.", "2510638", "Bacteria", "Bacteria", "159", "1.06e-45", "", "NR", "HZF69154.1", "2510638", "g34701", "i0", "80.2", "2.98961937716263", "96", "19", "99.7", "0", "2", "289", "181", "276", "HZF69154.1 decarboxylating 6-phosphogluconate dehydrogenase [Gemmatirosa sp.]", "diamond", "864", "159", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", "Gemmatimonadia", "Gemmatimonadales", "Gemmatimonadaceae", "Gemmatirosa", "Gemmatirosa sp."], [20341855, "PRJNA792582_P_NODE_39496_length_279_cov_1.354369_g38682_i0", "PRJNA792582", "39496", "279", "1.354369", "3.77868951", "Roseisolibacter agri", "2014610", "Bacteria", "Bacteria", "105", "6.89e-24", "", "NR", "WP_284350442.1", "2014610", "g38682", "i0", "67.5", "0.860215053763441", "80", "26", "86", "0", "3", "242", "1164", "1243", "WP_284350442.1 DUF4175 family protein [Roseisolibacter agri]", "diamond", "240", "105", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", "Gemmatimonadia", "Gemmatimonadales", "Gemmatimonadaceae", "Roseisolibacter", "Roseisolibacter agri"], [26673583, "PRJNA792582_P_NODE_47521_length_257_cov_1.375000_g46707_i0", "PRJNA792582", "47521", "257", "1.375", "3.53375", "Roseisolibacter sp. H3M3-2", "3031323", "Bacteria", "Bacteria", "63.5", "5.24e-11", "", "NR", "WP_275834931.1", "3031323", "g46707", "i0", "69.4", "1.66926070038911", "49", "14", "57.2", "1", "64", "210", "35", "82", "WP_275834931.1 hypothetical protein [Roseisolibacter sp. H3M3-2]", "diamond", "429", "63.5", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", "Gemmatimonadia", "Gemmatimonadales", "Gemmatimonadaceae", "Roseisolibacter", "Roseisolibacter sp. H3M3-2"], [28348630, "PRJNA792582_P_NODE_35906_length_288_cov_2.404651_g35092_i0", "PRJNA792582", "35906", "288", "2.404651", "6.92539488", "Gemmatimonadetes bacterium T265", "2839016", "Bacteria", "Bacteria", "144", "4.85e-41", "", "NR", "GJG88456.1", "2839016", "g35092", "i0", "77.9", "0.989583333333333", "95", "20", "99", "1", "3", "287", "77", "170", "GJG88456.1 hypothetical protein tb265_36370 [Gemmatimonadetes bacterium T265]", "diamond", "285", "144", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", null, null, null, null, "Gemmatimonadetes bacterium T265"], [29548269, "PRJNA792582_P_NODE_37170_length_285_cov_1.509434_g36356_i0", "PRJNA792582", "37170", "285", "1.509434", "4.3018869", "Gemmatimonadaceae bacterium", "2026741", "Bacteria", "Bacteria", "44.3", "0.0178", "", "NR", "HXT14879.1", "2026741", "g36356", "i0", "40.8", "0.515789473684211", "49", "29", "51.6", "0", "193", "47", "773", "821", "HXT14879.1 transcription-repair coupling factor [Gemmatimonadaceae bacterium]", "diamond", "147", "44.3", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", "Gemmatimonadia", "Gemmatimonadales", "Gemmatimonadaceae", null, "Gemmatimonadaceae bacterium"], [30275218, "PRJNA792582_P_NODE_35212_length_290_cov_1.917051_g34398_i0", "PRJNA792582", "35212", "290", "1.917051", "5.5594479", "Longimicrobium sp.", "2029185", "Bacteria", "Bacteria", "169", "6.4e-48", "", "NR", "WP_329683937.1", "2029185", "g34398", "i0", "85.1", "2.95862068965517", "94", "14", "97.2", "0", "7", "288", "310", "403", "WP_329683937.1 hypothetical protein [Longimicrobium sp.]", "diamond", "858", "169", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", "Longimicrobiia", "Longimicrobiales", "Longimicrobiaceae", "Longimicrobium", "Longimicrobium sp."], [30338591, "PRJNA792582_P_NODE_47012_length_258_cov_2.264865_g46198_i0", "PRJNA792582", "47012", "258", "2.264865", "5.8433517", "Gemmatirosa kalamazoonensis", "861299", "Bacteria", "Bacteria", "118", "1.35e-28", "", "NR", "WP_158508910.1", "861299", "g46198", "i0", "73.3", "1", "86", "23", "100", "0", "1", "258", "284", "369", "WP_158508910.1 VWA domain-containing protein [Gemmatirosa kalamazoonensis]", "diamond", "258", "118", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", "Gemmatimonadia", "Gemmatimonadales", "Gemmatimonadaceae", "Gemmatirosa", "Gemmatirosa kalamazoonensis"], [30527658, "PRJNA792582_P_NODE_44553_length_265_cov_2.255208_g43739_i0", "PRJNA792582", "44553", "265", "2.255208", "5.9763012", "Roseisolibacter agri", "2014610", "Bacteria", "Bacteria", "57", "4.39e-7", "", "NR", "WP_284352059.1", "2014610", "g43739", "i0", "78.1", "0.362264150943396", "32", "7", "36.2", "0", "263", "168", "431", "462", "WP_284352059.1 hypothetical protein [Roseisolibacter agri]", "diamond", "96", "57", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", "Gemmatimonadia", "Gemmatimonadales", "Gemmatimonadaceae", "Roseisolibacter", "Roseisolibacter agri"], [32203498, "PRJNA792582_P_NODE_44258_length_266_cov_1.595855_g43444_i0", "PRJNA792582", "44258", "266", "1.595855", "4.2449743", "Gemmatimonadota bacterium", "2026742", "Bacteria", "Bacteria", "46.2", "0.00128", "", "NR", "MCH7532820.1", "2026742", "g43444", "i0", "46.4", "0.631578947368421", "56", "19", "54.1", "2", "220", "77", "103", "155", "MCH7532820.1 hypothetical protein [Gemmatimonadota bacterium]", "diamond", "168", "46.2", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", null, null, null, null, "Gemmatimonadota bacterium"], [32708954, "PRJNA792582_P_NODE_57460_length_243_cov_0.905882_g56646_i0", "PRJNA792582", "57460", "243", "0.905882", "2.20129326", "Longimicrobiaceae bacterium", "3047548", "Bacteria", "Bacteria", "41.2", "0.0209", "", "NR", "HEV2733865.1", "3047548", "g56646", "i0", "33.9", "0.765432098765432", "62", "32", "65.4", "1", "220", "62", "2", "63", "HEV2733865.1 thioredoxin family protein [Longimicrobiaceae bacterium]", "diamond", "186", "41.2", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", "Longimicrobiia", "Longimicrobiales", "Longimicrobiaceae", null, "Longimicrobiaceae bacterium"]], "truncated": false, "filtered_table_rows_count": 15, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "diamond", "p1": "PRJNA792582", "p2": "Gemmatimonadota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA792582&tax_phylum=Gemmatimonadota", "results": [{"value": "PRJNA792582", "label": "PRJNA792582", "count": 15, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&tax_phylum=Gemmatimonadota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA792582&tax_phylum=Gemmatimonadota", "results": [{"value": "diamond", "label": "diamond", "count": 15, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA792582&tax_phylum=Gemmatimonadota", "selected": true}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA792582&tax_phylum=Gemmatimonadota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 15, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA792582&tax_phylum=Gemmatimonadota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA792582&tax_phylum=Gemmatimonadota", "results": [{"value": "FCB group", "label": "FCB group", "count": 15, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA792582&tax_phylum=Gemmatimonadota&tax_clade=FCB+group", "selected": false}], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA792582&tax_phylum=Gemmatimonadota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 15, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA792582&tax_phylum=Gemmatimonadota&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA792582&tax_phylum=Gemmatimonadota", "results": [{"value": "Gemmatimonadota", "label": "Gemmatimonadota", "count": 15, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA792582", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 199.98109599691816}