{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"diamond\", bioproject = \"PRJNA758088\" and tax_phylum = \"Campylobacterota\"", "rows": [[26682804, "PRJNA758088_P_NODE_244261_length_272_cov_1.361809_g237290_i0", "PRJNA758088", "244261", "272", "1.361809", "3.70412048", "Pseudomonadati", "3379134", "Bacteria", "Bacteria", "50.8", "3.34e-5", "", "NR", "WP_148129205.1", "197", "g237290", "i0", "65.5", "0.970588235294118", "29", "10", "32", "0", "3", "89", "1", "29", "WP_148129205.1 BspA family leucine-rich repeat surface protein, partial [Campylobacter jejuni]", "diamond", "264", "51.2", "0.9921875", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter jejuni"], [27716765, "PRJNA758088_P_NODE_212584_length_292_cov_1.301370_g205613_i0", "PRJNA758088", "212584", "292", "1.30137", "3.8000004", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "40.4", "0.0348", "", "NR", "GAA8932380.1", "210", "g205613", "i0", "90.2", "0.421232876712329", "41", "4", "42.1", "0", "3", "125", "2", "42", "GAA8932380.1 hypothetical protein Kyoto166A_4400 [Helicobacter pylori]", "diamond", "123", "40.4", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [28158639, "PRJNA758088_P_NODE_122225_length_379_cov_2.320261_g115254_i0", "PRJNA758088", "122225", "379", "2.320261", "8.79378919", "Campylobacterales bacterium", "2268180", "Bacteria", "Bacteria", "93.6", "2.67e-19", "", "NR", "MBY0539904.1", "2268180", "g115254", "i0", "57.9", "0.601583113456464", "76", "32", "60.2", "0", "372", "145", "357", "432", "MBY0539904.1 hypothetical protein [Campylobacterales bacterium]", "diamond", "228", "93.6", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", null, null, "Campylobacterales bacterium"], [28600559, "PRJNA758088_P_NODE_139547_length_356_cov_1.346290_g132576_i0", "PRJNA758088", "139547", "356", "1.34629", "4.7927924", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "53.9", "4.15e-7", "", "NR", "GAA8683167.1", "210", "g132576", "i0", "73.3", "0.252808988764045", "30", "8", "25.3", "0", "356", "267", "1", "30", "GAA8683167.1 hypothetical protein Kyoto145A_0420 [Helicobacter pylori]", "diamond", "90", "53.9", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [28610312, "PRJNA758088_P_NODE_180327_length_316_cov_1.267490_g173356_i0", "PRJNA758088", "180327", "316", "1.26749", "4.0052684", "Pseudomonadati", "3379134", "Bacteria", "Bacteria", "202", "3.9e-65", "", "NR", "MCH3755768.1", "195", "g173356", "i0", "99", "1.99367088607595", "105", "1", "99.7", "0", "315", "1", "9", "113", "MCH3755768.1 ATP-binding cassette domain-containing protein [Campylobacter coli]", "diamond", "630", "204", "0.990196078431373", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter coli"], [28726780, "PRJNA758088_P_NODE_344387_length_243_cov_1.358824_g337416_i0", "PRJNA758088", "344387", "243", "1.358824", "3.30194232", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "52", "6.03e-7", "", "NR", "GAA9104010.1", "210", "g337416", "i0", "87.5", "0.296296296296296", "24", "3", "29.6", "0", "158", "87", "4", "27", "GAA9104010.1 hypothetical protein Kyoto184A_09450 [Helicobacter pylori]", "diamond", "72", "52", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [29042675, "PRJNA758088_P_NODE_340388_length_244_cov_0.900585_g333417_i0", "PRJNA758088", "340388", "244", "0.900585", "2.1974274", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "52", "7.07e-7", "", "NR", "GAA8812112.1", "210", "g333417", "i0", "90.9", "0.590163934426229", "22", "2", "27", "0", "118", "183", "26", "47", "GAA8812112.1 hypothetical protein Kyoto149A_3190 [Helicobacter pylori]", "diamond", "144", "52", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [31285188, "PRJNA758088_P_NODE_248395_length_270_cov_0.893401_g241424_i0", "PRJNA758088", "248395", "270", "0.893401", "2.4121827", "uncultured Helicobacter sp.", "175537", "Bacteria", "Bacteria", "75.1", "5.87e-14", "", "NR", "WP_300948534.1", "175537", "g241424", "i0", "51.7", "3.04444444444444", "60", "29", "66.7", "0", "255", "76", "91", "150", "WP_300948534.1 carbonic anhydrase [uncultured Helicobacter sp.]", "diamond", "822", "75.1", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "uncultured Helicobacter sp."], [32519366, "PRJNA758088_P_NODE_69539_length_515_cov_1.002262_g62587_i0", "PRJNA758088", "69539", "515", "1.002262", "5.1616493", "Campylobacterales bacterium", "2268180", "Bacteria", "Bacteria", "121", "1.47e-28", "", "NR", "MBY0539904.1", "2268180", "g62587", "i0", "41.9", "0.972815533980583", "167", "93", "97.3", "2", "501", "1", "258", "420", "MBY0539904.1 hypothetical protein [Campylobacterales bacterium]", "diamond", "501", "121", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", null, null, "Campylobacterales bacterium"]], "truncated": false, "filtered_table_rows_count": 9, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "diamond", "p1": "PRJNA758088", "p2": "Campylobacterota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA758088&tax_phylum=Campylobacterota", "results": [{"value": "PRJNA758088", "label": "PRJNA758088", "count": 9, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA758088&tax_phylum=Campylobacterota", "results": [{"value": "diamond", "label": "diamond", "count": 9, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA758088&tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA758088&tax_phylum=Campylobacterota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 9, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA758088&tax_phylum=Campylobacterota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA758088&tax_phylum=Campylobacterota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA758088&tax_phylum=Campylobacterota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 9, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA758088&tax_phylum=Campylobacterota&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA758088&tax_phylum=Campylobacterota", "results": [{"value": "Campylobacterota", "label": "Campylobacterota", "count": 9, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA758088", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 378.4869580049417}