{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"diamond\", bioproject = \"PRJNA663960\" and tax_phylum = \"Campylobacterota\"", "rows": [[10832727, "PRJNA663960_S_NODE_18829_length_271_cov_4.897321_g18593_i0", "PRJNA663960", "18829", "271", "4.897321", "13.27173991", "Sulfurospirillum tamanense", "2813362", "Bacteria", "Bacteria", "153", "7.03e-44", "", "NR", "WP_205459884.1", "2813362", "g18593", "i0", "83.1", "0.985239852398524", "89", "15", "98.5", "0", "269", "3", "71", "159", "WP_205459884.1 signal recognition particle-docking protein FtsY [Sulfurospirillum tamanense]", "diamond", "267", "153", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Sulfurospirillaceae", "Sulfurospirillum", "Sulfurospirillum tamanense"], [26618782, "PRJNA663960_S_NODE_28881_length_226_cov_1.424581_g28645_i0", "PRJNA663960", "28881", "226", "1.424581", "3.21955306", "root", "1", "Root_unresolved", "Root_unresolved", "47.4", "5.16e-4", "", "NR", "GAA9176518.1", "210", "g28645", "i0", "65.1", "3.53097345132743", "43", "14", "55.8", "1", "128", "3", "95", "137", "GAA9176518.1 hypothetical protein Kyoto193A_0800 [Helicobacter pylori]", "diamond", "798", "47.4", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [26638199, "PRJNA663960_S_NODE_51521_length_169_cov_1.163934_g51285_i0", "PRJNA663960", "51521", "169", "1.163934", "1.96704846", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "114", "3.5099999999999993e-31", "", "NR", "WP_322538256.1", "210", "g51285", "i0", "96.4", "0.976331360946746", "55", "2", "97.6", "0", "3", "167", "53", "107", "WP_322538256.1 hypothetical protein, partial [Helicobacter pylori]", "diamond", "165", "114", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", 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hypothetical protein Kyoto198A_1640 [Helicobacter pylori]", "diamond", "135", "42", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [27820290, "PRJNA663960_S_NODE_57324_length_162_cov_0.886957_g57088_i0", "PRJNA663960", "57324", "162", "0.886957", "1.43687034", "root", "1", "Root_unresolved", "Root_unresolved", "40.4", "0.0132", "", "NR", "GAA8957928.1", "210", "g57088", "i0", "51.4", "1.37037037037037", "37", "16", "64.8", "1", "162", "58", "15", "51", "GAA8957928.1 hypothetical protein Kyoto181A_3320 [Helicobacter pylori]", "diamond", "222", "40.8", "0.990196078431373", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [28281398, "PRJNA663960_S_NODE_44226_length_183_cov_1.227941_g43990_i0", "PRJNA663960", "44226", "183", "1.227941", "2.24713203", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "39.7", "0.0272", "", "NR", "GAA6862807.1", "210", "g43990", "i0", "50", "0.622950819672131", "38", "17", "59", "1", "48", "155", "1", "38", "GAA6862807.1 hypothetical protein Kyoto206A_1910 [Helicobacter pylori]", "diamond", "114", "39.7", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [28912824, "PRJNA663960_S_NODE_36408_length_202_cov_0.987097_g36172_i0", "PRJNA663960", "36408", "202", "0.987097", "1.99393594", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "40.8", "0.0197", "", "NR", "GAA9174405.1", "210", "g36172", "i0", "63", "0.400990099009901", "27", "10", "40.1", "0", "82", "2", "27", "53", "GAA9174405.1 hypothetical protein Kyoto190A_6010 [Helicobacter pylori]", "diamond", "81", "40.8", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [29039637, "PRJNA663960_S_NODE_55948_length_163_cov_1.318966_g55712_i0", "PRJNA663960", "55948", "163", "1.318966", "2.14991458", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "58.2", "1.09e-9", "", "NR", "GAA9250341.1", "210", "g55712", "i0", "59.1", "3.33128834355828", "44", "18", "81", "0", "13", "144", "3", "46", "GAA9250341.1 hypothetical protein Kyoto199A_2020 [Helicobacter pylori]", "diamond", "543", "58.2", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [29323419, "PRJNA663960_S_NODE_38149_length_197_cov_1.700000_g37913_i0", "PRJNA663960", "38149", "197", "1.7", "3.349", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "92.4", "1.81e-22", "", "NR", "WP_322538256.1", "210", "g37913", "i0", "72.1", "0.928934010152284", "61", "17", "92.9", "0", "195", "13", "20", "80", "WP_322538256.1 hypothetical protein, partial [Helicobacter pylori]", "diamond", "183", "92.4", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [29386824, "PRJNA663960_S_NODE_55349_length_164_cov_0.871795_g55113_i0", "PRJNA663960", "55349", "164", "0.871795", "1.4297438", "Aliarcobacter cryaerophilus", "28198", "Bacteria", "Bacteria", "45.8", "9.43e-5", "", "NR", "WP_222860981.1", "28198", "g55113", "i0", "57.5", "0.731707317073171", "40", "17", "73.2", "0", "164", "45", "12", "51", "WP_222860981.1 hypothetical protein, partial [Aliarcobacter cryaerophilus]", "diamond", "120", "45.8", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Arcobacteraceae", "Aliarcobacter", "Aliarcobacter cryaerophilus"], [30315261, "PRJNA663960_S_NODE_62572_length_157_cov_1.390909_g62336_i0", "PRJNA663960", "62572", "157", "1.390909", "2.18372713", "root", "1", "Root_unresolved", "Root_unresolved", "46.6", "1.5e-4", "", "NR", "GAA9039918.1", "210", "g62336", "i0", "63.6", "2.48407643312102", "33", "12", "63.1", "0", "1", "99", "33", "65", "GAA9039918.1 hypothetical protein Kyoto184A_01840 [Helicobacter pylori]", "diamond", "390", "46.6", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [30744981, "PRJNA663960_S_NODE_39374_length_194_cov_1.387755_g39138_i0", "PRJNA663960", "39374", "194", "1.387755", "2.6922447", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "41.2", "0.00577", "", "NR", "GAA8857867.1", "210", "g39138", "i0", "63.3", "0.463917525773196", "30", "10", "46.4", "1", "158", "69", "2", "30", "GAA8857867.1 hypothetical protein Kyoto154A_2260 [Helicobacter pylori]", "diamond", "90", "41.2", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [31073152, "PRJNA663960_S_NODE_13575_length_304_cov_3.712062_g13339_i0", "PRJNA663960", "13575", "304", "3.712062", "11.28466848", "Campylobacterales", "213849", "Bacteria", "Bacteria", "50.1", "3.05e-5", "", "NR", "WP_341549733.1", "197", "g13339", "i0", "50.9", "0.967105263157895", "53", "24", "52.3", "1", "180", "22", "57", "107", "WP_341549733.1 reverse transcriptase domain-containing protein, partial [Campylobacter jejuni]", "diamond", "294", "50.4", "0.994047619047619", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter jejuni"], [31282056, "PRJNA663960_S_NODE_50335_length_171_cov_1.233871_g50099_i0", "PRJNA663960", "50335", "171", "1.233871", "2.10991941", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "46.6", "8.78e-5", "", "NR", "GAA6860039.1", "210", "g50099", "i0", "83.3", "0.421052631578947", "24", "4", "42.1", "0", "97", "168", "3", "26", "GAA6860039.1 hypothetical protein Kyoto206A_1170 [Helicobacter pylori]", "diamond", "72", "46.6", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [31579085, "PRJNA663960_S_NODE_10676_length_327_cov_5.614286_g10440_i0", "PRJNA663960", "10676", "327", "5.614286", "18.35871522", "root", "1", "Root_unresolved", "Root_unresolved", "57", "2.13e-7", "", "NR", "GAA9250408.1", "210", "g10440", "i0", "52.4", "11.8899082568807", "63", "26", "56", "2", "188", "6", "40", "100", "GAA9250408.1 hypothetical protein Kyoto199A_2030 [Helicobacter pylori]", "diamond", "3888", "57.4", "0.993031358885017", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [31978000, "PRJNA663960_S_NODE_19378_length_268_cov_5.475113_g19142_i0", "PRJNA663960", "19378", "268", "5.475113", "14.67330284", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "40", "0.0476", "", "NR", "GAA6962098.1", "210", "g19142", "i0", "59.5", "0.414179104477612", "37", "15", "41.4", "0", "113", "3", "6", "42", "GAA6962098.1 hypothetical protein Kyoto211A_2340 [Helicobacter pylori]", "diamond", "111", "40", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [32009738, "PRJNA663960_S_NODE_33678_length_209_cov_4.000000_g33442_i0", "PRJNA663960", "33678", "209", "4", "8.36", "Aliarcobacter cryaerophilus", "28198", "Bacteria", "Bacteria", "60.1", "3.98e-10", "", "NR", "WP_222860981.1", "28198", "g33442", "i0", "63", "0.660287081339713", "46", "17", "66", "0", "201", "64", "17", "62", "WP_222860981.1 hypothetical protein, partial [Aliarcobacter cryaerophilus]", "diamond", "138", "60.1", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Arcobacteraceae", "Aliarcobacter", "Aliarcobacter cryaerophilus"], [32136349, "PRJNA663960_S_NODE_45678_length_180_cov_1.150376_g45442_i0", "PRJNA663960", "45678", "180", "1.150376", "2.0706768", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "56.6", "4.77e-9", "", "NR", "GAA9179107.1", "210", "g45442", "i0", "70.5", "0.733333333333333", "44", "13", "73.3", "0", "151", "20", "6", "49", "GAA9179107.1 hypothetical protein Kyoto193A_2120 [Helicobacter pylori]", "diamond", "132", "56.6", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [32231420, "PRJNA663960_S_NODE_61118_length_158_cov_3.216216_g60882_i0", "PRJNA663960", "61118", "158", "3.216216", "5.08162128", "Campylobacter coli", "195", "Bacteria", "Bacteria", "50.8", "1.12e-6", "", "NR", "RJF75347.1", "195", "g60882", "i0", "54.9", "0.968354430379747", "51", "23", "96.8", "0", "1", "153", "11", "61", "RJF75347.1 hypothetical protein D4Z77_08730, partial [Campylobacter coli]", "diamond", "153", "50.8", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter coli"], [32294840, "PRJNA663960_S_NODE_57239_length_162_cov_0.886957_g57003_i0", "PRJNA663960", "57239", "162", "0.886957", "1.43687034", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "52.4", "3.62e-7", "", "NR", "GAA8706992.1", "210", "g57003", "i0", "53.1", "0.907407407407407", "49", "23", "90.7", "0", "147", "1", "7", "55", "GAA8706992.1 hypothetical protein Kyoto145A_3660 [Helicobacter pylori]", "diamond", "147", "52.4", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [32811639, "PRJNA663960_S_NODE_36320_length_202_cov_1.316129_g36084_i0", "PRJNA663960", "36320", "202", "1.316129", "2.65858058", "root", "1", "Root_unresolved", "Root_unresolved", "65.9", "2.25e-11", "", "NR", "GAA8854467.1", "210", "g36084", "i0", "50", "22.7079207920792", "64", "32", "95", "0", "3", "194", "59", "122", "GAA8854467.1 hypothetical protein Kyoto154A_1460 [Helicobacter pylori]", "diamond", "4587", "65.9", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"]], "truncated": false, "filtered_table_rows_count": 22, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "diamond", "p1": "PRJNA663960", "p2": "Campylobacterota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA663960&tax_phylum=Campylobacterota", "results": [{"value": "PRJNA663960", "label": "PRJNA663960", "count": 22, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA663960&tax_phylum=Campylobacterota", "results": [{"value": "diamond", "label": "diamond", "count": 22, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA663960&tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA663960&tax_phylum=Campylobacterota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 22, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA663960&tax_phylum=Campylobacterota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA663960&tax_phylum=Campylobacterota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA663960&tax_phylum=Campylobacterota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 22, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA663960&tax_phylum=Campylobacterota&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA663960&tax_phylum=Campylobacterota", "results": [{"value": "Campylobacterota", "label": "Campylobacterota", "count": 22, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA663960", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 424.02266200224403}