{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"diamond\", bioproject = \"PRJNA661142\" and tax_phylum = \"Bacteroidota\"", "rows": [[8281346, "PRJNA661142_P_NODE_5327_length_336_cov_3.198606_g5262_i0", "PRJNA661142", "5327", "336", "3.198606", "10.74731616", "Cytophagaceae bacterium", "2026729", "Bacteria", "Bacteria", "117", "9.66e-28", "", "NR", "MCY7349550.1", "2026729", "g5262", "i0", "86.6", "0.598214285714286", "67", "9", "59.8", "0", "203", "3", "1", "67", "MCY7349550.1 DNA-directed RNA polymerase subunit beta [Cytophagaceae bacterium]", "diamond", "201", "117", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Cytophagia", "Cytophagales", "Cytophagaceae", null, "Cytophagaceae bacterium"], [14657068, "PRJNA661142_P_NODE_12812_length_161_cov_0.901786_g12747_i0", "PRJNA661142", "12812", "161", "0.901786", "1.45187546", "Pseudomonadati", "3379134", "Bacteria", "Bacteria", "95.9", "3.2299999999999997e-24", "", "NR", "MBN2862707.1", "2030927", "g12747", "i0", "100", "3.65217391304348", "49", "0", "91.3", "0", "2", "148", "46", "94", "MBN2862707.1 sigma-70 family RNA polymerase sigma factor [Bacteroidales bacterium]", "diamond", "588", "95.9", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Bacteroidia", "Bacteroidales", null, null, "Bacteroidales bacterium"], [15930958, "PRJNA661142_P_NODE_11813_length_165_cov_0.879310_g11748_i0", "PRJNA661142", "11813", "165", "0.87931", "1.4508615", "Mariniphaga", "1573806", "Bacteria", "Bacteria", "108", "1.14e-25", "", "NR", "WP_073002820.1", "1484053", "g11748", "i0", "79.6", "7.85454545454545", "54", "11", "98.2", "0", "2", "163", "157", "210", "WP_073002820.1 S9 family peptidase [Mariniphaga anaerophila]", "diamond", "1296", "109", "0.990825688073395", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Bacteroidia", "Marinilabiliales", "Prolixibacteraceae", "Mariniphaga", "Mariniphaga anaerophila"], [17206145, "PRJNA661142_P_NODE_2874_length_464_cov_32.091566_g2811_i0", "PRJNA661142", "2874", "464", "32.091566", "148.90486624", "Cytophagaceae bacterium", "2026729", "Bacteria", "Bacteria", "238", "4.34e-76", "", "NR", "MCY7349237.1", "2026729", "g2811", "i0", "80", "1.92025862068966", "145", "29", "93.8", "0", "30", "464", "126", "270", "MCY7349237.1 DUF58 domain-containing protein [Cytophagaceae bacterium]", "diamond", "891", "238", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Cytophagia", "Cytophagales", "Cytophagaceae", null, "Cytophagaceae bacterium"], [20288235, "PRJNA661142_P_NODE_9276_length_234_cov_1.654054_g9211_i0", "PRJNA661142", "9276", "234", "1.654054", "3.87048636", "Flavobacterium sp.", "239", "Bacteria", "Bacteria", "119", "4.03e-32", "", "NR", "WP_291275097.1", "239", "g9211", "i0", "100", "0.769230769230769", "60", "0", "76.9", "0", "31", "210", "97", "156", "WP_291275097.1 hypothetical protein [Flavobacterium sp.]", "diamond", "180", "119", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Flavobacteriia", "Flavobacteriales", "Flavobacteriaceae", "Flavobacterium", "Flavobacterium sp."], [27334442, "PRJNA661142_P_NODE_12563_length_162_cov_0.902655_g12498_i0", "PRJNA661142", "12563", "162", "0.902655", "1.4623011", "Bacteroidales bacterium", "2030927", "Bacteria", "Bacteria", "114", "7.48e-28", "", "NR", "MBK7713321.1", "2030927", "g12498", "i0", "98.1", "0.981481481481482", "53", "1", "98.1", "0", "3", "161", "377", "429", "MBK7713321.1 GH92 family glycosyl hydrolase [Bacteroidales bacterium]", "diamond", "159", "114", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Bacteroidia", "Bacteroidales", null, null, "Bacteroidales bacterium"], [27997512, "PRJNA661142_P_NODE_11405_length_167_cov_0.864407_g11340_i0", "PRJNA661142", "11405", "167", "0.864407", "1.44355969", "Bacteroidales bacterium", "2030927", "Bacteria", "Bacteria", "111", "1.51e-27", "", "NR", "MFN8207644.1", "2030927", "g11340", "i0", "94.5", "1.97604790419162", "55", "3", "98.8", "0", "166", "2", "42", "96", "MFN8207644.1 hydrogenase small subunit [Bacteroidales bacterium]", "diamond", "330", "111", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Bacteroidia", "Bacteroidales", null, null, "Bacteroidales bacterium"], [28072633, "PRJNA661142_P_NODE_11485_length_167_cov_0.864407_g11420_i0", "PRJNA661142", "11485", "167", "0.864407", "1.44355969", "Bacteria", "2", "Bacteria", "Bacteria", "88.6", "9.38e-19", "", "NR", "MDP4224471.1", "1898104", "g11420", "i0", "81.8", "2.96407185628743", "55", "10", "98.8", "0", "165", "1", "455", "509", "MDP4224471.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit [Bacteroidota bacterium]", "diamond", "495", "89.4", "0.991051454138702", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", null, null, null, null, "Bacteroidota bacterium"], [28092053, "PRJNA661142_P_NODE_11505_length_167_cov_0.864407_g11440_i0", "PRJNA661142", "11505", "167", "0.864407", "1.44355969", "Bacteroidales bacterium", "2030927", "Bacteria", "Bacteria", "84.7", "6.86e-18", "", "NR", "HVN57689.1", "2030927", "g11440", "i0", "67.3", "2.92814371257485", "55", "18", "98.8", "0", "167", "3", "133", "187", "HVN57689.1 glycosyltransferase family 2 protein [Bacteroidales bacterium]", "diamond", "489", "84.7", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Bacteroidia", "Bacteroidales", null, null, "Bacteroidales bacterium"], [28629059, "PRJNA661142_P_NODE_2347_length_514_cov_19.406452_g2284_i0", "PRJNA661142", "2347", "514", "19.406452", "99.74916328", "Prevotellaceae bacterium", "2049047", "Bacteria", "Bacteria", "299", "3.2e-101", "", "NR", "MDO4195568.1", "2049047", "g2284", "i0", "98.6", "0.840466926070039", "144", "2", "84", "0", "31", "462", "58", "201", "MDO4195568.1 peptidoglycan editing factor PgeF [Prevotellaceae bacterium]", "diamond", "432", "299", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Bacteroidia", "Bacteroidales", "Prevotellaceae", null, "Prevotellaceae bacterium"], [28692216, "PRJNA661142_P_NODE_11047_length_181_cov_1.159091_g10982_i0", "PRJNA661142", "11047", "181", "1.159091", "2.09795471", "Tenuifilaceae bacterium", "2952975", "Bacteria", "Bacteria", "110", "6.63e-29", "", "NR", "HPX06961.1", "2952975", "g10982", "i0", "84.7", "0.977900552486188", "59", "9", "97.8", "0", "3", "179", "33", "91", "HPX06961.1 helix-turn-helix domain-containing protein [Tenuifilaceae bacterium]", "diamond", "177", "110", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Bacteroidia", "Bacteroidales", "Tenuifilaceae", null, "Tenuifilaceae bacterium"], [28944882, "PRJNA661142_P_NODE_11388_length_167_cov_0.864407_g11323_i0", "PRJNA661142", "11388", "167", "0.864407", "1.44355969", "Bacteroidota bacterium", "1898104", "Bacteria", "Bacteria", "77", "1.08e-14", "", "NR", "MDP4207277.1", "1898104", "g11323", "i0", "63.8", "3", "58", "18", "98.8", "1", "3", "167", "21", "78", "MDP4207277.1 restriction endonuclease subunit S [Bacteroidota bacterium]", "diamond", "501", "77", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", null, null, null, null, "Bacteroidota bacterium"], [29134249, "PRJNA661142_P_NODE_7989_length_266_cov_2.350230_g7924_i0", "PRJNA661142", "7989", "266", "2.35023", "6.2516118", "Alloprevotella sp. oral taxon 473", "712469", "Bacteria", "Bacteria", "181", "6.629999999999999e-52", "", "NR", "WP_009437093.1", "712469", "g7924", "i0", "96.6", "0.992481203007519", "88", "3", "99.2", "0", "266", "3", "358", "445", "WP_009437093.1 biosynthetic arginine decarboxylase [Alloprevotella sp. oral taxon 473]", "diamond", "264", "181", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Bacteroidia", "Bacteroidales", "Prevotellaceae", "Alloprevotella", "Alloprevotella sp. oral taxon 473"], [29165821, "PRJNA661142_P_NODE_11889_length_165_cov_0.879310_g11824_i0", "PRJNA661142", "11889", "165", "0.87931", "1.4508615", "Chryseobacterium lacus", "2058346", "Bacteria", "Bacteria", "107", "8.07e-27", "", "NR", "WP_114303105.1", "2058346", "g11824", "i0", "100", "0.981818181818182", "54", "0", "98.2", "0", "2", "163", "111", "164", "WP_114303105.1 enoyl-CoA hydratase/isomerase family protein [Chryseobacterium lacus]", "diamond", "162", "107", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Flavobacteriia", "Flavobacteriales", "Weeksellaceae", "Chryseobacterium", "Chryseobacterium lacus"], [29418068, "PRJNA661142_P_NODE_6289_length_306_cov_2.381323_g6224_i0", "PRJNA661142", "6289", "306", "2.381323", "7.28684838", "Salinivirgaceae bacterium", "2053305", "Bacteria", "Bacteria", "56.6", "3.79e-8", "", "NR", "MFO7863651.1", "2053305", "g6224", "i0", "85.3", "0.333333333333333", "34", "5", "33.3", "0", "125", "226", "40", "73", "MFO7863651.1 hypothetical protein [Salinivirgaceae bacterium]", "diamond", "102", "56.6", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Bacteroidia", "Bacteroidales", "Salinivirgaceae", null, "Salinivirgaceae bacterium"], [29575823, "PRJNA661142_P_NODE_12410_length_162_cov_0.902655_g12345_i0", "PRJNA661142", "12410", "162", "0.902655", "1.4623011", "Bacteroidia bacterium", "2044936", "Bacteria", "Bacteria", "81.6", "2.37e-16", "", "NR", "MCX6259887.1", "2044936", "g12345", "i0", "72.2", "4", "54", "15", "100", "0", "1", "162", "227", "280", "MCX6259887.1 SLC13 family permease [Bacteroidia bacterium]", "diamond", "648", "81.6", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Bacteroidia", null, null, null, "Bacteroidia bacterium"], [29860215, "PRJNA661142_P_NODE_3731_length_406_cov_22.352941_g3667_i0", "PRJNA661142", "3731", "406", "22.352941", "90.75294046", "Flavobacteriaceae bacterium", "1871037", "Bacteria", "Bacteria", "58.2", "3.3e-7", "", "NR", "MDX1470936.1", "1871037", "g3667", "i0", "32.1", "2.96305418719212", "137", "80", "95.3", "5", "6", "392", "65", "196", "MDX1470936.1 hypothetical protein [Flavobacteriaceae bacterium]", "diamond", "1203", "58.2", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Flavobacteriia", "Flavobacteriales", "Flavobacteriaceae", null, "Flavobacteriaceae bacterium"], [30144239, "PRJNA661142_P_NODE_11472_length_167_cov_0.864407_g11407_i0", "PRJNA661142", "11472", "167", "0.864407", "1.44355969", "Bacteroidota bacterium", "1898104", "Bacteria", "Bacteria", "54.3", "1.09e-6", "", "NR", "MEI6684414.1", "1898104", "g11407", "i0", "41.8", "2.91017964071856", "55", "32", "98.8", "0", "3", "167", "63", "117", "MEI6684414.1 HAMP domain-containing sensor histidine kinase [Bacteroidota bacterium]", "diamond", "486", "54.3", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", null, null, null, null, "Bacteroidota bacterium"], [30366157, "PRJNA661142_P_NODE_3732_length_406_cov_11.596639_g3668_i0", "PRJNA661142", "3732", "406", "11.596639", "47.08235434", "Sphingobacteriales bacterium", "2044944", "Bacteria", "Bacteria", "264", "8.599999999999998e-82", "", "NR", "RYD51931.1", "2044944", "g3668", "i0", "96.3", "0.990147783251232", "134", "5", "99", "0", "404", "3", "142", "275", "RYD51931.1 MAG: PASTA domain-containing protein [Sphingobacteriales bacterium]", "diamond", "402", "264", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Sphingobacteriia", "Sphingobacteriales", null, null, "Sphingobacteriales bacterium"], [30429349, "PRJNA661142_P_NODE_9373_length_232_cov_0.836066_g9308_i0", "PRJNA661142", "9373", "232", "0.836066", "1.93967312", "Sphingobacteriia bacterium", "2035813", "Bacteria", "Bacteria", "71.6", "1.74e-12", "", "NR", "NCA73025.1", "2035813", "g9308", "i0", "50.7", "0.969827586206897", "75", "35", "94.4", "1", "228", "10", "111", "185", "NCA73025.1 hypothetical protein [Sphingobacteriia bacterium]", "diamond", "225", "71.6", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Sphingobacteriia", null, null, null, "Sphingobacteriia bacterium"], [31218448, "PRJNA661142_P_NODE_2795_length_472_cov_32.262411_g2732_i0", "PRJNA661142", "2795", "472", "32.262411", "152.27857992", "Flavobacterium arcticum", "1784713", "Bacteria", "Bacteria", "87.4", "1.18e-16", "", "NR", "WP_114678018.1", "1784713", "g2732", "i0", "48.4", "0.591101694915254", "93", "45", "57.2", "1", "1", "270", "12", "104", "WP_114678018.1 T9SS type A sorting domain-containing protein [Flavobacterium arcticum]", "diamond", "279", "87.4", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Flavobacteriia", "Flavobacteriales", "Flavobacteriaceae", "Flavobacterium", "Flavobacterium arcticum"], [31472060, "PRJNA661142_P_NODE_9576_length_226_cov_1.440678_g9511_i0", "PRJNA661142", "9576", "226", "1.440678", "3.25593228", "Flavobacterium sp.", "239", "Bacteria", "Bacteria", "168", "1.91e-50", "", "NR", "WP_374552115.1", "239", "g9511", "i0", "98.7", "0.995575221238938", "75", "1", "99.6", "0", "1", "225", "62", "136", "WP_374552115.1 DNA-methyltransferase [Flavobacterium sp.]", "diamond", "225", "168", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Flavobacteriia", "Flavobacteriales", "Flavobacteriaceae", "Flavobacterium", "Flavobacterium sp."], [31503668, "PRJNA661142_P_NODE_10936_length_185_cov_1.500000_g10871_i0", "PRJNA661142", "10936", "185", "1.5", "2.775", "Chryseobacterium oryzae", "2929799", "Bacteria", "Bacteria", "95.9", "3.3e-21", "", "NR", "WP_243576690.1", "2929799", "g10871", "i0", "73.8", "0.989189189189189", "61", "16", "98.9", "0", "183", "1", "1071", "1131", "WP_243576690.1 translocation/assembly module TamB domain-containing protein [Chryseobacterium oryzae]", "diamond", "183", "95.9", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Flavobacteriia", "Flavobacteriales", "Weeksellaceae", "Chryseobacterium", "Chryseobacterium oryzae"], [31819698, "PRJNA661142_P_NODE_5937_length_316_cov_4.228464_g5872_i0", "PRJNA661142", "5937", "316", "4.228464", "13.36194624", "Bacteroidota bacterium", "1898104", "Bacteria", "Bacteria", "187", "3.7599999999999986e-55", "", "NR", "MBU1821030.1", "1898104", "g5872", "i0", "92.3", "0.987341772151899", "104", "8", "98.7", "0", "3", "314", "334", "437", "MBU1821030.1 RagB/SusD family nutrient uptake outer membrane protein [Bacteroidota bacterium]", "diamond", "312", "187", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", null, null, null, null, "Bacteroidota bacterium"], [31977929, "PRJNA661142_P_NODE_11618_length_166_cov_0.871795_g11553_i0", "PRJNA661142", "11618", "166", "0.871795", "1.4471797", "Bacteroidales bacterium", "2030927", "Bacteria", "Bacteria", "82.4", "1.38e-16", "", "NR", "MDY0099278.1", "2030927", "g11553", "i0", "68.5", "1.89759036144578", "54", "17", "97.6", "0", "5", "166", "769", "822", "MDY0099278.1 DUF5107 domain-containing protein [Bacteroidales bacterium]", "diamond", "315", "82.4", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", "Bacteroidia", "Bacteroidales", null, null, "Bacteroidales bacterium"], [32704934, "PRJNA661142_P_NODE_12220_length_163_cov_0.894737_g12155_i0", "PRJNA661142", "12220", "163", "0.894737", "1.45842131", "Bacteroidota bacterium", "1898104", "Bacteria", "Bacteria", "101", "1.68e-23", "", "NR", "MDP4223160.1", "1898104", "g12155", "i0", "92.6", "0.993865030674847", "54", "4", "99.4", "0", "1", "162", "212", "265", "MDP4223160.1 RagB/SusD family nutrient uptake outer membrane protein [Bacteroidota bacterium]", "diamond", "162", "101", "1", "Bacteria", "FCB group", "Pseudomonadati", "Bacteroidota", null, null, null, null, "Bacteroidota bacterium"]], "truncated": false, "filtered_table_rows_count": 26, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "diamond", "p1": "PRJNA661142", "p2": "Bacteroidota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA661142&tax_phylum=Bacteroidota", "results": [{"value": "PRJNA661142", "label": "PRJNA661142", "count": 26, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&tax_phylum=Bacteroidota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA661142&tax_phylum=Bacteroidota", "results": [{"value": "diamond", "label": "diamond", "count": 26, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA661142&tax_phylum=Bacteroidota", "selected": true}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA661142&tax_phylum=Bacteroidota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 26, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA661142&tax_phylum=Bacteroidota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA661142&tax_phylum=Bacteroidota", "results": [{"value": "FCB group", "label": "FCB group", "count": 26, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA661142&tax_phylum=Bacteroidota&tax_clade=FCB+group", "selected": false}], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA661142&tax_phylum=Bacteroidota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 26, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA661142&tax_phylum=Bacteroidota&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA661142&tax_phylum=Bacteroidota", "results": [{"value": "Bacteroidota", "label": "Bacteroidota", "count": 26, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA661142", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 258.04480700026033}