{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"diamond\", bioproject = \"PRJNA641991\" and tax_phylum = \"Pseudomonadota\"", "rows": [[26828233, "PRJNA641991_P_NODE_3941_length_163_cov_0.894737_g3900_i0", "PRJNA641991", "3941", "163", "0.894737", "1.45842131", "Vibrio vulnificus", "672", "Bacteria", "Bacteria", "41.2", "0.0145", "", "NR", "WP_263574758.1", "672", "g3900", "i0", "63.9", "8.5398773006135", "36", "13", "66.3", "0", "162", "55", "5", "40", "WP_263574758.1 hypothetical protein, partial [Vibrio vulnificus]", "diamond", "1392", "41.6", "0.990384615384615", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Vibrionales", "Vibrionaceae", "Vibrio", "Vibrio vulnificus"], [27870834, "PRJNA641991_S_NODE_925_length_547_cov_1.648594_g809_i0", "PRJNA641991", "925", "547", "1.648594", "9.01780918", "Hyphomicrobiales bacterium", "1909294", "Bacteria", "Bacteria", "46.6", "0.0238", "", "NR", "MBV9051098.1", "1909294", "g809", "i0", "29.7", "1.39853747714808", "138", "87", "74", "3", "520", "116", "193", "323", "MBV9051098.1 FAD-binding oxidoreductase [Hyphomicrobiales bacterium]", "diamond", "765", "46.6", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Alphaproteobacteria", "Hyphomicrobiales", null, null, "Hyphomicrobiales bacterium"], [28470973, "PRJNA641991_S_NODE_7846_length_198_cov_226.919463_g7727_i0", "PRJNA641991", "7846", "198", "226.919463", "449.30053674", "Klebsiella pneumoniae", "573", "Bacteria", "Bacteria", "114", "1.78e-30", "", "NR", "WP_416532323.1", "573", "g7727", "i0", "96.3", "0.818181818181818", "54", "2", "81.8", "0", "198", "37", "91", "144", "WP_416532323.1 hypothetical protein, partial [Klebsiella pneumoniae]", "diamond", "162", "114", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Enterobacterales", "Enterobacteriaceae", "Klebsiella", "Klebsiella pneumoniae"], [28514755, "PRJNA641991_S_NODE_8307_length_194_cov_1.462069_g8188_i0", "PRJNA641991", "8307", "194", "1.462069", "2.83641386", "Bacteria", "2", "Bacteria", "Bacteria", "41.6", "0.0478", "", "NR", "MBN8520949.1", "1913988", "g8188", "i0", "39.5", "1.32989690721649", "43", "26", "66.5", "0", "34", "162", "165", "207", "MBN8520949.1 succinate dehydrogenase iron-sulfur subunit [Alphaproteobacteria bacterium]", "diamond", "258", "41.6", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Alphaproteobacteria", null, null, null, "Alphaproteobacteria bacterium"], [28786381, "PRJNA641991_S_NODE_4567_length_250_cov_1.592040_g4448_i0", "PRJNA641991", "4567", "250", "1.59204", "3.9801", "Candidatus Thiodiazotropha taylori", "2792791", "Bacteria", "Bacteria", "63.5", "1.95e-9", "", "NR", "MCG8077976.1", "2792791", "g4448", "i0", "42.2", "3.936", "83", "48", "99.6", "0", "2", "250", "844", "926", "MCG8077976.1 DDE-type integrase/transposase/recombinase [Candidatus Thiodiazotropha taylori]", "diamond", "984", "63.5", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Chromatiales", "Sedimenticolaceae", "Candidatus Thiodiazotropha", "Candidatus Thiodiazotropha taylori"], [29102450, "PRJNA641991_S_NODE_4448_length_253_cov_2.215686_g4329_i0", "PRJNA641991", "4448", "253", "2.215686", "5.60568558", "Endozoicomonas elysicola", "305900", "Bacteria", "Bacteria", "42.7", "0.0408", "", "NR", "WP_020582764.1", "305900", "g4329", "i0", "39.1", "0.818181818181818", "69", "36", "74.7", "1", "237", "49", "222", "290", "WP_020582764.1 hypothetical protein [Endozoicomonas elysicola]", "diamond", "207", "42.7", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Oceanospirillales", "Endozoicomonadaceae", "Endozoicomonas", "Endozoicomonas elysicola"], [29240956, "PRJNA641991_S_NODE_14249_length_162_cov_0.902655_g14130_i0", "PRJNA641991", "14249", "162", "0.902655", "1.4623011", "Acinetobacter", "469", "Bacteria", "Bacteria", "107", "4.39e-26", "", "NR", "MEG2273630.1", "472", "g14130", "i0", "100", "3.92592592592593", "53", "0", "98.1", "0", "160", "2", "169", "221", "MEG2273630.1 hypothetical protein [Acinetobacter sp.]", "diamond", "636", "107", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Moraxellales", "Moraxellaceae", "Acinetobacter", "Acinetobacter sp."], [30334430, "PRJNA641991_S_NODE_14892_length_161_cov_0.910714_g14773_i0", "PRJNA641991", "14892", "161", "0.910714", "1.46624954", "Shewanella septentrionalis", "2952223", "Bacteria", "Bacteria", "109", "2.54e-28", "", "NR", "WP_261271577.1", "2952223", "g14773", "i0", "94.3", "0.987577639751553", "53", "3", "98.8", "0", "161", "3", "118", "170", "WP_261271577.1 hypothetical protein [Shewanella septentrionalis]", "diamond", "159", "109", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Alteromonadales", "Shewanellaceae", "Shewanella", "Shewanella septentrionalis"], [30820298, "PRJNA641991_S_NODE_3374_length_287_cov_1.500000_g3255_i0", "PRJNA641991", "3374", "287", "1.5", "4.305", "Kiloniella", "454159", "Bacteria", "Bacteria", "87.4", "1.15e-17", "", "NR", "MBS0558773.1", "1977087", "g3255", "i0", "53.8", "3.53310104529617", "93", "43", "97.2", "0", "285", "7", "329", "421", "MBS0558773.1 NADH-quinone oxidoreductase subunit M [Pseudomonadota bacterium]", "diamond", "1014", "88.2", "0.99092970521542", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", null, null, null, null, "Pseudomonadota bacterium"], [30902788, "PRJNA641991_S_NODE_5754_length_227_cov_0.955056_g5635_i0", "PRJNA641991", "5754", "227", "0.955056", "2.16797712", "Methylovirgula sp.", "1978224", "Bacteria", "Bacteria", "41.6", "0.0451", "", "NR", "HEY1736391.1", "1978224", "g5635", "i0", "28.4", "0.977973568281938", "74", "53", "97.8", "0", "2", "223", "20", "93", "HEY1736391.1 SRPBCC family protein [Methylovirgula sp.]", "diamond", "222", "41.6", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Alphaproteobacteria", "Hyphomicrobiales", "Beijerinckiaceae", "Methylovirgula", "Methylovirgula sp."], [31135857, "PRJNA641991_S_NODE_10415_length_177_cov_1.062500_g10296_i0", "PRJNA641991", "10415", "177", "1.0625", "1.880625", "Alphaproteobacteria", "28211", "Bacteria", "Bacteria", "63.9", "3.62e-10", "", "NR", "MBO6491012.1", "2026775", "g10296", "i0", "55.9", "12.7627118644068", "59", "22", "100", "2", "1", "177", "214", "268", "MBO6491012.1 glycine cleavage system aminomethyltransferase GcvT [Pelagibacteraceae bacterium]", "diamond", "2259", "64.3", "0.993779160186625", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Alphaproteobacteria", "Candidatus Pelagibacterales", "Candidatus Pelagibacteraceae", null, "Pelagibacteraceae bacterium"], [31218314, "PRJNA641991_S_NODE_5795_length_226_cov_1.333333_g5676_i0", "PRJNA641991", "5795", "226", "1.333333", "3.01333258", "Pseudomonadota bacterium", "1977087", "Bacteria", "Bacteria", "42", "0.0366", "", "NR", "MEO0390848.1", "1977087", "g5676", "i0", "33.9", "0.743362831858407", "56", "33", "69", "1", "66", "221", "43", "98", "MEO0390848.1 GNAT family N-acetyltransferase [Pseudomonadota bacterium]", "diamond", "168", "42", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", null, null, null, null, "Pseudomonadota bacterium"], [31768647, "PRJNA641991_S_NODE_13717_length_163_cov_0.894737_g13598_i0", "PRJNA641991", "13717", "163", "0.894737", "1.45842131", "Mariluticola", "3064792", "Bacteria", "Bacteria", "82.4", "9.05e-18", "", "NR", "HEY8594805.1", "2845825", "g13598", "i0", "77.1", "3.53374233128834", "48", "10", "88.3", "1", "145", "2", "43", "89", "HEY8594805.1 nucleoside deaminase [Devosiaceae bacterium]", "diamond", "576", "83.2", "0.990384615384615", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Alphaproteobacteria", "Hyphomicrobiales", "Devosiaceae", null, "Devosiaceae bacterium"], [31831747, "PRJNA641991_S_NODE_12037_length_167_cov_0.864407_g11918_i0", "PRJNA641991", "12037", "167", "0.864407", "1.44355969", "Pseudomonadati", "3379134", "Bacteria", "Bacteria", "42.4", "0.00764", "", "NR", "HSS14100.1", "1978228", "g11918", "i0", "47.7", "8.04790419161677", "44", "21", "75.4", "1", "32", "157", "14", "57", "HSS14100.1 class I SAM-dependent methyltransferase [Rhizomicrobium sp.]", "diamond", "1344", "42.4", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Alphaproteobacteria", "Micropepsales", "Micropepsaceae", "Rhizomicrobium", "Rhizomicrobium sp."], [32041193, "PRJNA641991_S_NODE_14378_length_162_cov_0.902655_g14259_i0", "PRJNA641991", "14378", "162", "0.902655", "1.4623011", "Vogesella urethralis", "2592656", "Bacteria", "Bacteria", "98.6", "1.17e-22", "", "NR", "WP_144373153.1", "2592656", "g14259", "i0", "100", "0.851851851851852", "46", "0", "85.2", "0", "161", "24", "137", "182", "WP_144373153.1 multidrug efflux MFS transporter MdtH [Vogesella urethralis]", "diamond", "138", "98.6", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Betaproteobacteria", "Neisseriales", "Chromobacteriaceae", "Vogesella", "Vogesella urethralis"], [32294608, "PRJNA641991_P_NODE_1859_length_226_cov_0.830508_g1818_i0", "PRJNA641991", "1859", "226", "0.830508", "1.87694808", "Rickettsiales bacterium Ac37b", "1528098", "Bacteria", "Bacteria", "63.2", "1.26e-9", "", "NR", "AIL65752.1", "1528098", "g1818", "i0", "75.8", "0.79646017699115", "33", "8", "43.8", "0", "226", "128", "221", "253", "AIL65752.1 Cytochrome c oxidase subunit 2 precursor [Rickettsiales bacterium Ac37b]", "diamond", "180", "63.2", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Alphaproteobacteria", "Rickettsiales", null, null, "Rickettsiales bacterium Ac37b"], [32420890, "PRJNA641991_S_NODE_13319_length_164_cov_0.886957_g13200_i0", "PRJNA641991", "13319", "164", "0.886957", "1.45460948", "Aureimonas populi", "1701758", "Bacteria", "Bacteria", "66.6", "3.94e-11", "", "NR", "WP_209735593.1", "1701758", "g13200", "i0", "68.2", "0.804878048780488", "44", "13", "80.5", "1", "135", "4", "66", "108", "WP_209735593.1 L,D-transpeptidase family protein [Aureimonas populi]", "diamond", "132", "66.6", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Alphaproteobacteria", "Hyphomicrobiales", "Aurantimonadaceae", "Aureimonas", "Aureimonas populi"], [32452725, "PRJNA641991_P_NODE_3999_length_162_cov_0.902655_g3958_i0", "PRJNA641991", "3999", "162", "0.902655", "1.4623011", "Pseudomonas citronellolis", "53408", "Bacteria", "Bacteria", "66.2", "6.11e-11", "", "NR", "KAF1066225.1", "53408", "g3958", "i0", "63", "1.7962962962963", "46", "17", "85.2", "0", "162", "25", "82", "127", "KAF1066225.1 MAG: hypothetical protein GAK45_01990 [Pseudomonas citronellolis]", "diamond", "291", "66.2", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Pseudomonadales", "Pseudomonadaceae", "Pseudomonas", "Pseudomonas citronellolis"]], "truncated": false, "filtered_table_rows_count": 18, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "diamond", "p1": "PRJNA641991", "p2": "Pseudomonadota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA641991&tax_phylum=Pseudomonadota", "results": [{"value": "PRJNA641991", "label": "PRJNA641991", "count": 18, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&tax_phylum=Pseudomonadota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA641991&tax_phylum=Pseudomonadota", "results": [{"value": "diamond", "label": "diamond", "count": 18, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA641991&tax_phylum=Pseudomonadota", "selected": true}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA641991&tax_phylum=Pseudomonadota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 18, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA641991&tax_phylum=Pseudomonadota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA641991&tax_phylum=Pseudomonadota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA641991&tax_phylum=Pseudomonadota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 18, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA641991&tax_phylum=Pseudomonadota&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA641991&tax_phylum=Pseudomonadota", "results": [{"value": "Pseudomonadota", "label": "Pseudomonadota", "count": 18, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA641991", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 229.71608499938156}