{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"diamond\", bioproject = \"PRJNA473641\" and tax_phylum = \"Pseudomonadota\"", "rows": [[10023771, "PRJNA473641_P_NODE_7428_length_351_cov_0.920863_g7345_i0", "PRJNA473641", "7428", "351", "0.920863", "3.23222913", "Burkholderiales", "80840", "Bacteria", "Bacteria", "195", "4.3499999999999995e-57", "", "NR", "WP_114468125.1", "545864", "g7345", "i0", "80.2", "47.3846153846154", "116", "22", "99.1", "1", "3", "350", "421", "535", "WP_114468125.1 3-(methylthio)propionyl-CoA ligase [Pseudorhodoferax soli]", "diamond", "16632", "196", "0.994897959183674", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Betaproteobacteria", "Burkholderiales", "Comamonadaceae", "Pseudorhodoferax", "Pseudorhodoferax soli"], [26601049, "PRJNA473641_P_NODE_21441_length_246_cov_0.890173_g21358_i0", "PRJNA473641", "21441", "246", "0.890173", "2.18982558", "Allosphingosinicella sp.", "2823234", "Bacteria", "Bacteria", "103", "1.88e-23", "", "NR", "WP_331039338.1", "2823234", "g21358", "i0", "72.5", "0.841463414634146", "69", "18", "82.9", "1", "246", "43", "489", "557", "WP_331039338.1 class I adenylate-forming enzyme family protein [Allosphingosinicella sp.]", "diamond", "207", "103", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Alphaproteobacteria", "Sphingomonadales", "Sphingomonadaceae", "Allosphingosinicella", "Allosphingosinicella sp."], [26664374, "PRJNA473641_P_NODE_1661_length_635_cov_1.583630_g1579_i0", "PRJNA473641", "1661", "635", "1.58363", "10.0560505", "Neptuniibacter sp. QD34_54", "3398208", "Bacteria", "Bacteria", "191", "8.089999999999999e-57", "", "NR", "WP_415882484.1", "3398208", "g1579", "i0", "48.8", "4.01102362204724", "211", "102", "99.7", "4", "634", "2", "40", "244", "WP_415882484.1 group I truncated hemoglobin [Neptuniibacter sp. QD34_54]", "diamond", "2547", "191", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Oceanospirillales", "Oceanospirillaceae", "Neptuniibacter", "Neptuniibacter sp. QD34_54"], [26918001, "PRJNA473641_P_NODE_10082_length_315_cov_0.954545_g9999_i0", "PRJNA473641", "10082", "315", "0.954545", "3.00681675", "Chitinibacter fontanus", "1737446", "Bacteria", "Bacteria", "107", "2.33e-24", "", "NR", "WP_180306650.1", "1737446", "g9999", "i0", "64.9", "2.12380952380952", "74", "26", "70.5", "0", "1", "222", "601", "674", "WP_180306650.1 glycosyl hydrolase family 18 protein [Chitinibacter fontanus]", "diamond", "669", "107", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Betaproteobacteria", "Neisseriales", "Chitinibacteraceae", "Chitinibacter", "Chitinibacter fontanus"], [26918002, "PRJNA473641_P_NODE_11822_length_297_cov_1.375000_g11739_i0", "PRJNA473641", "11822", "297", "1.375", "4.08375", "Cellvibrionales bacterium", "2026722", "Bacteria", "Bacteria", "48.9", "3.6e-4", "", "NR", "MCY4045457.1", "2026722", "g11739", "i0", "33", "0.888888888888889", "88", "52", "88.9", "3", "10", "273", "143", "223", "MCY4045457.1 glutathione S-transferase family protein [Cellvibrionales bacterium]", "diamond", "264", "48.9", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Cellvibrionales", null, null, "Cellvibrionales bacterium"], [27408677, "PRJNA473641_P_NODE_3423_length_472_cov_1.538847_g3340_i0", "PRJNA473641", "3423", "472", "1.538847", "7.26335784", "root", "1", "Root_unresolved", "Root_unresolved", "134", "3.1899999999999997e-37", "", "NR", "WP_404852727.1", "562", "g3340", "i0", "61.3", "1.51271186440678", "119", "44", "75.6", "2", "442", "86", "1", "117", "WP_404852727.1 non-specific lipid-transfer protein [Escherichia coli]", "diamond", "714", "134", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Enterobacterales", "Enterobacteriaceae", "Escherichia", "Escherichia coli"], [27739910, "PRJNA473641_P_NODE_18084_length_250_cov_0.870056_g18001_i0", "PRJNA473641", "18084", "250", "0.870056", "2.17514", "Acetobacteraceae bacterium", "1909293", "Bacteria", "Bacteria", "42.4", "0.0288", "", "NR", "MCC7280952.1", "1909293", "g18001", "i0", "48", "0.6", "50", "18", "60", "2", "99", "248", "20", "61", "MCC7280952.1 GNAT family N-acetyltransferase [Acetobacteraceae bacterium]", "diamond", "150", "42.4", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Alphaproteobacteria", "Acetobacterales", "Acetobacteraceae", null, "Acetobacteraceae bacterium"], [27865726, "PRJNA473641_P_NODE_17565_length_251_cov_0.865169_g17482_i0", "PRJNA473641", "17565", "251", "0.865169", "2.17157419", "Pseudomonadota bacterium", "1977087", "Bacteria", "Bacteria", "78.6", "9.92e-15", "", "NR", "MEO0343026.1", "1977087", "g17482", "i0", "84.6", "0.920318725099602", "39", "6", "46.6", "0", "118", "2", "296", "334", "MEO0343026.1 terminase TerL endonuclease subunit [Pseudomonadota bacterium]", "diamond", "231", "78.6", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", null, null, null, null, "Pseudomonadota bacterium"], [27929076, "PRJNA473641_P_NODE_4745_length_415_cov_0.900585_g4662_i0", "PRJNA473641", "4745", "415", "0.900585", "3.73742775", "Aestuariivirga sp.", "2650926", "Bacteria", "Bacteria", "100", "9.31e-22", "", "NR", "WP_415005741.1", "2650926", "g4662", "i0", "40.3", "0.896385542168675", "124", "62", "89.6", "2", "11", "382", "241", "352", "WP_415005741.1 hypothetical protein [Aestuariivirga sp.]", "diamond", "372", "100", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Alphaproteobacteria", "Hyphomicrobiales", "Aestuariivirgaceae", "Aestuariivirga", "Aestuariivirga sp."], [28071389, "PRJNA473641_P_NODE_12485_length_290_cov_1.419355_g12402_i0", "PRJNA473641", "12485", "290", "1.419355", "4.1161295", "Bacteria", "2", "Bacteria", "Bacteria", "96.7", "5e-24", "", "NR", "WP_289465466.1", "573", "g12402", "i0", "68.6", "1.96551724137931", "70", "22", "72.4", "0", "290", "81", "3", "72", "WP_289465466.1 hypothetical protein, partial [Klebsiella pneumoniae]", "diamond", "570", "96.7", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Enterobacterales", "Enterobacteriaceae", "Klebsiella", "Klebsiella pneumoniae"], [28307986, "PRJNA473641_P_NODE_3506_length_468_cov_1.726582_g3423_i0", "PRJNA473641", "3506", "468", "1.726582", "8.08040376", "Salmonella enterica", "28901", "Bacteria", "Bacteria", "221", "6.329999999999999e-72", "", "NR", "MDR5387564.1", "90371", "g3423", "i0", "97.1", "0.673076923076923", "105", "3", "67.3", "0", "3", "317", "4", "108", "MDR5387564.1 DUF3421 domain-containing protein [Salmonella enterica subsp. enterica serovar Typhimurium]", "diamond", "315", "221", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Enterobacterales", "Enterobacteriaceae", "Salmonella", "Salmonella enterica"], [28718462, "PRJNA473641_P_NODE_21707_length_246_cov_0.890173_g21624_i0", "PRJNA473641", "21707", "246", "0.890173", "2.18982558", "Burkholderiaceae bacterium", "2030806", "Bacteria", "Bacteria", "42.4", "0.0435", "", "NR", "HZA96636.1", "2030806", "g21624", "i0", "44.1", "0.719512195121951", "59", "32", "72", "1", "19", "195", "48", "105", "HZA96636.1 glycerol-3-phosphate 1-O-acyltransferase PlsY [Burkholderiaceae bacterium]", "diamond", "177", "42.4", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Betaproteobacteria", "Burkholderiales", "Burkholderiaceae", null, "Burkholderiaceae bacterium"], [28829138, "PRJNA473641_P_NODE_16748_length_253_cov_1.283333_g16665_i0", "PRJNA473641", "16748", "253", "1.283333", "3.24683249", "Pseudomonadati", "3379134", "Bacteria", "Bacteria", "47.8", "5.91e-4", "", "NR", "RZA07720.1", "1889775", "g16665", "i0", "40.7", "2.71541501976285", "54", "26", "56.9", "1", "253", "110", "11", "64", "RZA07720.1 MAG: hypothetical protein EOO68_03010 [Moraxellaceae bacterium]", "diamond", "687", "47.8", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Moraxellales", "Moraxellaceae", null, "Moraxellaceae bacterium"], [29649741, "PRJNA473641_P_NODE_14050_length_276_cov_1.517241_g13967_i0", "PRJNA473641", "14050", "276", "1.517241", "4.18758516", "Pseudomonadota", "1224", "Bacteria", "Bacteria", "48.5", "5.35e-4", "", "NR", "MBX3717763.1", "1891238", "g13967", "i0", "48.5", "1.39130434782609", "66", "34", "71.7", "0", "261", "64", "121", "186", "MBX3717763.1 Ig-like domain repeat protein [Burkholderiales bacterium]", "diamond", "384", "48.9", "0.991820040899796", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Betaproteobacteria", "Burkholderiales", null, null, "Burkholderiales bacterium"], [30487023, "PRJNA473641_P_NODE_19913_length_248_cov_0.880000_g19830_i0", "PRJNA473641", "19913", "248", "0.88", "2.1824", "Klebsiella pneumoniae", "573", "Bacteria", "Bacteria", "159", "4.4e-49", "", "NR", "WP_289465622.1", "573", "g19830", "i0", "100", "1.76612903225806", "75", "0", "90.7", "0", "23", "247", "1", "75", "WP_289465622.1 hypothetical protein, partial [Klebsiella pneumoniae]", "diamond", "438", "159", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Enterobacterales", "Enterobacteriaceae", "Klebsiella", "Klebsiella pneumoniae"], [30581496, "PRJNA473641_P_NODE_13993_length_277_cov_1.132353_g13910_i0", "PRJNA473641", "13993", "277", "1.132353", "3.13661781", "Gammaproteobacteria bacterium CG12_big_fil_rev_8_21_14_", "1913989", "Bacteria", "Bacteria", "44.3", "0.0163", "", "NR", "PIQ42931.1", "1974024", "g13910", "i0", "44.2", "0.465703971119134", "43", "18", "46.6", "1", "189", "61", "425", "461", "PIQ42931.1 MAG: primosomal protein N' [Gammaproteobacteria bacterium CG12_big_fil_rev_8_21_14_0_65_46_12]", "diamond", "129", "44.3", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", null, null, null, "Gammaproteobacteria bacterium CG12_big_fil_rev_8_21_14_0_65_46_12"], [31782791, "PRJNA473641_P_NODE_19137_length_249_cov_0.875000_g19054_i0", "PRJNA473641", "19137", "249", "0.875", "2.17875", "Aestuariivirga sp.", "2650926", "Bacteria", "Bacteria", "71.6", "2.69e-12", "", "NR", "WP_415005741.1", "2650926", "g19054", "i0", "35.8", "0.975903614457831", "81", "52", "97.6", "0", "243", "1", "85", "165", "WP_415005741.1 hypothetical protein [Aestuariivirga sp.]", "diamond", "243", "71.6", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Alphaproteobacteria", "Hyphomicrobiales", "Aestuariivirgaceae", "Aestuariivirga", "Aestuariivirga sp."], [32352740, "PRJNA473641_P_NODE_19419_length_248_cov_2.708571_g19336_i0", "PRJNA473641", "19419", "248", "2.708571", "6.71725608", "Salmonella enterica", "28901", "Bacteria", "Bacteria", "129", "8.33e-37", "", "NR", "MDR5387555.1", "90371", "g19336", "i0", "90.5", "0.762096774193548", "63", "6", "76.2", "0", "247", "59", "55", "117", "MDR5387555.1 DUF3421 domain-containing protein [Salmonella enterica subsp. enterica serovar Typhimurium]", "diamond", "189", "129", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Enterobacterales", "Enterobacteriaceae", "Salmonella", "Salmonella enterica"], [32652692, "PRJNA473641_P_NODE_20980_length_247_cov_0.885057_g20897_i0", "PRJNA473641", "20980", "247", "0.885057", "2.18609079", "root", "1", "Root_unresolved", "Root_unresolved", "47.4", "9.57e-4", "", "NR", "APV50551.1", "1904640", "g20897", "i0", "45.3", "2.68421052631579", "86", "40", "97.2", "4", "247", "8", "493", "577", "APV50551.1 hypothetical protein BWI17_13150 [Betaproteobacteria bacterium GR16-43]", "diamond", "663", "47.4", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Betaproteobacteria", null, null, null, "Betaproteobacteria bacterium GR16-43"], [32731435, "PRJNA473641_P_NODE_1020_length_780_cov_1.973126_g950_i0", "PRJNA473641", "1020", "780", "1.973126", "15.3903828", "Betaproteobacteria bacterium", "1891241", "Bacteria", "Bacteria", "144", "1.13e-38", "", "NR", "NCY05671.1", "1891241", "g950", "i0", "53.8", "0.75", "195", "90", "75", "0", "46", "630", "4", "198", "NCY05671.1 hypothetical protein [Betaproteobacteria bacterium]", "diamond", "585", "144", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Betaproteobacteria", null, null, null, "Betaproteobacteria bacterium"], [32825850, "PRJNA473641_P_NODE_8380_length_336_cov_1.144487_g8297_i0", "PRJNA473641", "8380", "336", "1.144487", "3.84547632", "Pseudomonadota bacterium", "1977087", "Bacteria", "Bacteria", "72.8", "2.84e-12", "", "NR", "MCH8335333.1", "1977087", "g8297", "i0", "37.8", "0.875", "98", "45", "74.1", "2", "80", "328", "101", "197", "MCH8335333.1 MBL fold metallo-hydrolase [Pseudomonadota bacterium]", "diamond", "294", "72.8", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", null, null, null, null, "Pseudomonadota bacterium"]], "truncated": false, "filtered_table_rows_count": 21, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "diamond", "p1": "PRJNA473641", "p2": "Pseudomonadota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA473641&tax_phylum=Pseudomonadota", "results": [{"value": "PRJNA473641", "label": "PRJNA473641", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&tax_phylum=Pseudomonadota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA473641&tax_phylum=Pseudomonadota", "results": [{"value": "diamond", "label": "diamond", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA473641&tax_phylum=Pseudomonadota", "selected": true}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA473641&tax_phylum=Pseudomonadota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA473641&tax_phylum=Pseudomonadota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA473641&tax_phylum=Pseudomonadota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA473641&tax_phylum=Pseudomonadota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA473641&tax_phylum=Pseudomonadota&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA473641&tax_phylum=Pseudomonadota", "results": [{"value": "Pseudomonadota", "label": "Pseudomonadota", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA473641", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 480.2179750040523}