{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"diamond\", bioproject = \"PRJNA454503\" and tax_phylum = \"Campylobacterota\"", "rows": [[19568269, "PRJNA454503_P_NODE_43996_length_222_cov_1.614907_g43667_i0", "PRJNA454503", "43996", "222", "1.614907", "3.58509354", "uncultured Helicobacter sp.", "175537", "Bacteria", "Bacteria", "137", "8.98e-36", "", "NR", "WP_299327541.1", "175537", "g43667", "i0", "90.5", "1", "74", "7", "100", "0", "1", "222", "88", "161", "WP_299327541.1 OmpP1/FadL family transporter [uncultured Helicobacter sp.]", "diamond", "222", "137", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "uncultured Helicobacter sp."], [28529060, "PRJNA454503_P_NODE_59767_length_210_cov_0.872483_g59438_i0", "PRJNA454503", "59767", "210", "0.872483", "1.8322143", "Campylobacterota bacterium", "2026809", "Bacteria", "Bacteria", "92", "1.04e-19", "", "NR", "NPA59219.1", "2026809", "g59438", "i0", "62.3", "1.97142857142857", "69", "26", "98.6", "0", "3", "209", "654", "722", "NPA59219.1 glycosyltransferase [Campylobacterota bacterium]", "diamond", "414", "92", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", null, null, null, null, "Campylobacterota bacterium"], [29791666, "PRJNA454503_P_NODE_79391_length_204_cov_0.909091_g79062_i0", "PRJNA454503", "79391", "204", "0.909091", "1.85454564", "unclassified Sulfurospirillum", "2618290", "Bacteria", "Bacteria", "117", "3.95e-30", "", "NR", "WP_037959241.1", "2618290", "g79062", "i0", "77.3", "0.970588235294118", "66", "15", "97.1", "0", "203", "6", "109", "174", "WP_037959241.1 MULTISPECIES: NAD-dependent epimerase/dehydratase family protein [unclassified Sulfurospirillum]", "diamond", "198", "117", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Sulfurospirillaceae", "Sulfurospirillum", null], [30329435, "PRJNA454503_P_NODE_30692_length_238_cov_1.988701_g30363_i0", "PRJNA454503", "30692", "238", "1.988701", "4.73310838", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "48.1", "4.65e-5", "", "NR", "GAA8948737.1", "210", "g30363", "i0", "50", "0.957983193277311", "54", "17", "55.5", "1", "193", "62", "3", "56", "GAA8948737.1 hypothetical protein Kyoto181A_0640 [Helicobacter pylori]", "diamond", "228", "48.1", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [30960919, "PRJNA454503_P_NODE_30274_length_239_cov_1.460674_g29945_i0", "PRJNA454503", "30274", "239", "1.460674", "3.49101086", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "87.8", "1.28e-19", "", "NR", "WP_322377330.1", "210", "g29945", "i0", "97.6", "0.514644351464435", "41", "1", "51.5", "0", "123", "1", "1", "41", "WP_322377330.1 KilA-N domain-containing protein [Helicobacter pylori]", "diamond", "123", "87.8", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [31371916, "PRJNA454503_P_NODE_68016_length_207_cov_0.890411_g67687_i0", "PRJNA454503", "68016", "207", "0.890411", "1.84315077", "Campylobacter coli", "195", "Bacteria", "Bacteria", "120", "9.149999999999999e-34", "", "NR", "WP_289858361.1", "195", "g67687", "i0", "82.6", "1", "69", "12", "100", "0", "1", "207", "2", "70", "WP_289858361.1 DUF6950 family protein, partial [Campylobacter coli]", "diamond", "207", "120", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter coli"], [31403523, "PRJNA454503_P_NODE_37296_length_230_cov_1.538462_g36967_i0", "PRJNA454503", "37296", "230", "1.538462", "3.5384626", "Campylobacter sp. 2", "205", "Bacteria", "Bacteria", "85.5", "4.73e-19", "", "NR", "WP_214120692.1", "2836735", "g36967", "i0", "64.9", "0.965217391304348", "74", "23", "95.2", "2", "12", "230", "63", "134", "WP_214120692.1 hypothetical protein, partial [Campylobacter sp. 2018MI01]", "diamond", "222", "85.5", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter sp. 2018MI01"], [32004422, "PRJNA454503_P_NODE_78978_length_204_cov_0.909091_g78649_i0", "PRJNA454503", "78978", "204", "0.909091", "1.85454564", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "42", "0.00395", "", "NR", "GAA9140559.1", "210", "g78649", "i0", "61", "0.602941176470588", "41", "16", "60.3", "0", "123", "1", "4", "44", "GAA9140559.1 hypothetical protein Kyoto190A_3310 [Helicobacter pylori]", "diamond", "123", "42", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [32415850, "PRJNA454503_P_NODE_86979_length_200_cov_2.719424_g86650_i0", "PRJNA454503", "86979", "200", "2.719424", "5.438848", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "73.9", "7.77e-16", "", "NR", "GAA8692375.1", "210", "g86650", "i0", "73.3", "0.675", "45", "12", "67.5", "0", "136", "2", "1", "45", "GAA8692375.1 hypothetical protein Kyoto145A_2350 [Helicobacter pylori]", "diamond", "135", "73.9", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"]], "truncated": false, "filtered_table_rows_count": 9, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "diamond", "p1": "PRJNA454503", "p2": "Campylobacterota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA454503&tax_phylum=Campylobacterota", "results": [{"value": "PRJNA454503", "label": "PRJNA454503", "count": 9, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA454503&tax_phylum=Campylobacterota", "results": [{"value": "diamond", "label": "diamond", "count": 9, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA454503&tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA454503&tax_phylum=Campylobacterota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 9, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA454503&tax_phylum=Campylobacterota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA454503&tax_phylum=Campylobacterota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA454503&tax_phylum=Campylobacterota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 9, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA454503&tax_phylum=Campylobacterota&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA454503&tax_phylum=Campylobacterota", "results": [{"value": "Campylobacterota", "label": "Campylobacterota", "count": 9, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA454503", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 392.44151499997315}