{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"diamond\", bioproject = \"PRJNA414036\" and tax_clade = \"PVC group\"", "rows": [[27155000, "PRJNA414036_P_NODE_55122_length_231_cov_1.295918_g53383_i0", "PRJNA414036", "55122", "231", "1.295918", "2.99357058", "Verrucomicrobiales", "48461", "Bacteria", "Bacteria", "43.1", "0.0245", "", "NR", "MES2660572.1", "2026799", "g53383", "i0", "86.4", "1.42857142857143", "22", "3", "28.6", "0", "10", "75", "336", "357", "MES2660572.1 DUF1553 domain-containing protein [Verrucomicrobiota bacterium]", "diamond", "330", "43.1", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", null, null, null, null, "Verrucomicrobiota bacterium"], [27549388, "PRJNA414036_P_NODE_28864_length_280_cov_2.020408_g27129_i0", "PRJNA414036", "28864", "280", "2.020408", "5.6571424", "Gemmata obscuriglobus UQM 2246", "214688", "Bacteria", "Bacteria", "52", "1.77e-5", "", "NR", "VTS08183.1", "214688", "g27129", "i0", "45.3", "0.803571428571429", "75", "37", "80.4", "2", "45", "269", "95", "165", "VTS08183.1 Putative uncharacterized protein (Fragment) OS=uncultured alpha proteobacterium HF0070_14E07 PE=4 SV=1 [Gemmata obscuriglobus UQM 2246]", "diamond", "225", "52", "1", "Bacteria", "PVC group", "Pseudomonadati", "Planctomycetota", "Planctomycetia", "Gemmatales", "Gemmataceae", "Gemmata", "Gemmata obscuriglobus"], [28023188, "PRJNA414036_P_NODE_51365_length_231_cov_1.974490_g49626_i0", "PRJNA414036", "51365", "231", "1.97449", "4.5610719", "Phycisphaera sp.", "2030824", "Bacteria", "Bacteria", "46.6", "0.00128", "", "NR", "MBI1374130.1", "2030824", "g49626", "i0", "79.2", "0.584415584415584", "24", "5", "31.2", "0", "3", "74", "155", "178", "MBI1374130.1 hypothetical protein [Phycisphaera sp.]", "diamond", "135", "46.6", "1", "Bacteria", "PVC group", "Pseudomonadati", "Planctomycetota", "Phycisphaerae", "Phycisphaerales", "Phycisphaeraceae", "Phycisphaera", "Phycisphaera sp."], [28023190, "PRJNA414036_P_NODE_57165_length_227_cov_13.260417_g55426_i0", "PRJNA414036", "57165", "227", "13.260417", "30.10114659", "Planctomycetia bacterium", "2052181", "Bacteria", "Bacteria", "43.1", "0.0222", "", "NR", "MDZ4779250.1", "2052181", "g55426", "i0", "42.4", "0.872246696035242", "66", "32", "87.2", "3", "27", "224", "58", "117", "MDZ4779250.1 ATP-binding protein [Planctomycetia bacterium]", "diamond", "198", "43.1", "1", "Bacteria", "PVC group", "Pseudomonadati", "Planctomycetota", "Planctomycetia", null, null, null, "Planctomycetia bacterium"], [28938878, "PRJNA414036_P_NODE_77908_length_166_cov_5.664122_g76169_i0", "PRJNA414036", "77908", "166", "5.664122", "9.40244252", "Verrucomicrobiota bacterium", "2026799", "Bacteria", "Bacteria", "68.6", "4.84e-12", "", "NR", "MFM1945481.1", "2026799", "g76169", "i0", "63", "0.975903614457831", "54", "20", "97.6", "0", "166", "5", "8", "61", "MFM1945481.1 hypothetical protein [Verrucomicrobiota bacterium]", "diamond", "162", "68.6", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", null, null, null, null, "Verrucomicrobiota bacterium"], [29412250, "PRJNA414036_P_NODE_81009_length_161_cov_3.722222_g79270_i0", "PRJNA414036", "81009", "161", "3.722222", "5.99277742", "Verrucomicrobiia bacterium DG1235", "382464", "Bacteria", "Bacteria", "39.3", "0.0245", "", "NR", "EDY81568.1", "382464", "g79270", "i0", "48.9", "0.838509316770186", "45", "23", "83.9", "0", "143", "9", "1", "45", "EDY81568.1 hypothetical protein VDG1235_1186 [Verrucomicrobiia bacterium DG1235]", "diamond", "135", "39.3", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Verrucomicrobiia", null, null, null, "Verrucomicrobiia bacterium DG1235"], [29570118, "PRJNA414036_P_NODE_53630_length_231_cov_1.617347_g51891_i0", "PRJNA414036", "53630", "231", "1.617347", "3.73607157", "Verrucomicrobiota bacterium", "2026799", "Bacteria", "Bacteria", "46.2", "0.00182", "", "NR", "MCD8483432.1", "2026799", "g51891", "i0", "95.5", "0.285714285714286", "22", "1", "28.6", "0", "224", "159", "258", "279", "MCD8483432.1 KamA family radical SAM protein [Verrucomicrobiota bacterium]", "diamond", "66", "46.2", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", null, null, null, null, "Verrucomicrobiota bacterium"], [29618088, "PRJNA414036_P_NODE_40350_length_231_cov_10.973118_g38611_i0", "PRJNA414036", "40350", "231", "10.973118", "25.34790258", "Gemmataceae", "1914233", "Bacteria", "Bacteria", "48.1", "3.82e-4", "", "NR", "MEZ6140059.1", "1914240", "g38611", "i0", "95.5", "7.42857142857143", "22", "1", "28.6", "0", "223", "158", "91", "112", "MEZ6140059.1 response regulator [Zavarzinella sp.]", "diamond", "1716", "48.1", "1", "Bacteria", "PVC group", "Pseudomonadati", "Planctomycetota", "Planctomycetia", "Gemmatales", "Gemmataceae", "Zavarzinella", "Zavarzinella sp."], [29934404, "PRJNA414036_P_NODE_51591_length_231_cov_1.938776_g49852_i0", "PRJNA414036", "51591", "231", "1.938776", "4.47857256", "Verrucomicrobiales", "48461", "Bacteria", "Bacteria", "52.8", "9.71e-6", "", "NR", "MES2660572.1", "2026799", "g49852", "i0", "100", "2.57142857142857", "22", "0", "28.6", "0", "10", "75", "336", "357", "MES2660572.1 DUF1553 domain-containing protein [Verrucomicrobiota bacterium]", "diamond", "594", "52.8", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", null, null, null, null, "Verrucomicrobiota bacterium"], [30107047, "PRJNA414036_P_NODE_60812_length_213_cov_3.561798_g59073_i0", "PRJNA414036", "60812", "213", "3.561798", "7.58662974", "uncultured Verrucomicrobiales bacterium HF", "100234", "Bacteria", "Bacteria", "51.6", "3.7e-6", "", "NR", "ADI16721.1", "710995", "g59073", "i0", "52", "1.35211267605634", "50", "24", "70.4", "0", "212", "63", "46", "95", "ADI16721.1 hypothetical protein [uncultured Verrucomicrobiales bacterium HF0010_05E02]", "diamond", "288", "51.6", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Verrucomicrobiia", "Verrucomicrobiales", null, null, "uncultured Verrucomicrobiales bacterium HF0010_05E02"], [30233524, "PRJNA414036_P_NODE_41552_length_231_cov_4.897959_g39813_i0", "PRJNA414036", "41552", "231", "4.897959", "11.31428529", "Luteolibacter sp. SL25", "1962973", "Bacteria", "Bacteria", "42.4", "0.0423", "", "NR", "WP_267673192.1", "2995170", "g39813", "i0", "90.5", "0.272727272727273", "21", "2", "27.3", "0", "12", "74", "356", "376", "WP_267673192.1 valine--pyruvate transaminase [Luteolibacter sp. SL250]", "diamond", "63", "42.4", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Verrucomicrobiia", "Verrucomicrobiales", "Verrucomicrobiaceae", "Luteolibacter", "Luteolibacter sp. SL250"], [30439928, "PRJNA414036_P_NODE_52633_length_231_cov_1.775510_g50894_i0", "PRJNA414036", "52633", "231", "1.77551", "4.1014281", "Pseudomonadati", "3379134", "Bacteria", "Bacteria", "50.4", "6.03e-5", "", "NR", "MFT3990515.1", "1962973", "g50894", "i0", "90", "2.07792207792208", "20", "2", "26", "0", "11", "70", "613", "632", "MFT3990515.1 beta-glucosidase BglX [Luteolibacter sp.]", "diamond", "480", "50.4", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Verrucomicrobiia", "Verrucomicrobiales", "Verrucomicrobiaceae", "Luteolibacter", "Luteolibacter sp."], [30787327, "PRJNA414036_P_NODE_42854_length_231_cov_4.071429_g41115_i0", "PRJNA414036", "42854", "231", "4.071429", "9.40500099", "Roseimicrobium", "1348508", "Bacteria", "Bacteria", "49.3", "1.6e-4", "", "NR", "WP_113960408.1", "748857", "g41115", "i0", "95.5", "1.14285714285714", "22", "1", "28.6", "0", "222", "157", "100", "121", "WP_113960408.1 polyribonucleotide nucleotidyltransferase [Roseimicrobium gellanilyticum]", "diamond", "264", "49.7", "0.991951710261569", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Verrucomicrobiia", "Verrucomicrobiales", "Verrucomicrobiaceae", "Roseimicrobium", "Roseimicrobium gellanilyticum"], [30833836, "PRJNA414036_P_NODE_48674_length_231_cov_2.454082_g46935_i0", "PRJNA414036", "48674", "231", "2.454082", "5.66892942", "Verrucomicrobiales bacterium", "2026801", "Bacteria", "Bacteria", "50.8", "4.46e-5", "", "NR", "MCP5522605.1", "2026801", "g46935", "i0", "35", "1.03896103896104", "80", "41", "89.6", "1", "217", "11", "557", "636", "MCP5522605.1 efflux RND transporter permease subunit [Verrucomicrobiales bacterium]", "diamond", "240", "50.8", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Verrucomicrobiia", "Verrucomicrobiales", null, null, "Verrucomicrobiales bacterium"], [30850424, "PRJNA414036_P_NODE_41394_length_231_cov_5.035714_g39655_i0", "PRJNA414036", "41394", "231", "5.035714", "11.63249934", "Anatilimnocola", "2807414", "Bacteria", "Bacteria", "61.6", "7.03e-9", "", "NR", "MBI3461457.1", "2026780", "g39655", "i0", "44.7", "4.41558441558442", "85", "36", "96.1", "1", "10", "231", "91", "175", "MBI3461457.1 nucleotide sugar dehydrogenase [Planctomycetota bacterium]", "diamond", "1020", "61.6", "1", "Bacteria", "PVC group", "Pseudomonadati", "Planctomycetota", null, null, null, null, "Planctomycetota bacterium"], [31434319, "PRJNA414036_P_NODE_40876_length_231_cov_5.739796_g39137_i0", "PRJNA414036", "40876", "231", "5.739796", "13.25892876", "Verrucomicrobium spinosum", "2736", "Bacteria", "Bacteria", "52", "1e-5", "", "NR", "WP_009958448.1", "2736", "g39137", "i0", "44", "2.92207792207792", "75", "39", "93.5", "1", "221", "6", "117", "191", "WP_009958448.1 RNA polymerase sigma factor [Verrucomicrobium spinosum]", "diamond", "675", "52", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Verrucomicrobiia", "Verrucomicrobiales", "Verrucomicrobiaceae", "Verrucomicrobium", "Verrucomicrobium spinosum"], [31750552, "PRJNA414036_P_NODE_74317_length_173_cov_3.333333_g72578_i0", "PRJNA414036", "74317", "173", "3.333333", "5.76666609", "uncultured verrucomicrobium HF", "723599", "Bacteria", "Bacteria", "64.7", "2.69e-12", "", "NR", "ADI22640.1", "723599", "g72578", "i0", "70.8", "0.832369942196532", "48", "14", "83.2", "0", "148", "5", "2", "49", "ADI22640.1 hypothetical protein [uncultured verrucomicrobium HF0500_18J03]", "diamond", "144", "64.7", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", null, null, null, null, "uncultured verrucomicrobium HF0500_18J03"], [31782141, "PRJNA414036_P_NODE_25197_length_301_cov_10.511278_g23463_i0", "PRJNA414036", "25197", "301", "10.511278", "31.63894678", "Verrucomicrobiota bacterium", "2026799", "Bacteria", "Bacteria", "63.5", "1.03e-10", "", "NR", "PYL89444.1", "2026799", "g23463", "i0", "60.4", "0.528239202657807", "53", "21", "52.8", "0", "135", "293", "2", "54", "PYL89444.1 MAG: hypothetical protein DMF14_13365 [Verrucomicrobiota bacterium]", "diamond", "159", "63.5", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", null, null, null, null, "Verrucomicrobiota bacterium"], [32066963, "PRJNA414036_P_NODE_43358_length_231_cov_3.846939_g41619_i0", "PRJNA414036", "43358", "231", "3.846939", "8.88642909", "Verrucomicrobiales bacterium", "2026801", "Bacteria", "Bacteria", "53.5", "4.43e-6", "", "NR", "MDB6070785.1", "2026801", "g41619", "i0", "95.5", "0.285714285714286", "22", "1", "28.6", "0", "159", "224", "228", "249", "MDB6070785.1 hypothetical protein [Verrucomicrobiales bacterium]", "diamond", "66", "53.5", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Verrucomicrobiia", "Verrucomicrobiales", null, null, "Verrucomicrobiales bacterium"], [32098663, "PRJNA414036_P_NODE_50858_length_231_cov_2.066327_g49119_i0", "PRJNA414036", "50858", "231", "2.066327", "4.77321537", "Haloferula sp.", "2497595", "Bacteria", "Bacteria", "47.8", "3.84e-4", "", "NR", "HEY1123956.1", "2497595", "g49119", "i0", "75", "0.311688311688312", "24", "6", "31.2", "0", "75", "4", "176", "199", "HEY1123956.1 hypothetical protein [Haloferula sp.]", "diamond", "72", "47.8", "1", "Bacteria", "PVC group", "Pseudomonadati", "Verrucomicrobiota", "Verrucomicrobiia", "Verrucomicrobiales", "Verrucomicrobiaceae", "Haloferula", "Haloferula sp."]], "truncated": false, "filtered_table_rows_count": 20, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_clade\" = :p2 order by rowid limit 101", "params": {"p0": "diamond", "p1": "PRJNA414036", "p2": "PVC group"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA414036&tax_clade=PVC+group", "results": [{"value": "PRJNA414036", "label": "PRJNA414036", "count": 20, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&tax_clade=PVC+group", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA414036&tax_clade=PVC+group", "results": [{"value": "diamond", "label": "diamond", "count": 20, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA414036&tax_clade=PVC+group", "selected": true}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA414036&tax_clade=PVC+group", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 20, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA414036&tax_clade=PVC+group&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA414036&tax_clade=PVC+group", "results": [{"value": "PVC group", "label": "PVC group", "count": 20, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA414036", "selected": true}], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA414036&tax_clade=PVC+group", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 20, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA414036&tax_clade=PVC+group&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA414036&tax_clade=PVC+group", "results": [{"value": "Verrucomicrobiota", "label": "Verrucomicrobiota", "count": 15, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA414036&tax_clade=PVC+group&tax_phylum=Verrucomicrobiota", "selected": false}, {"value": "Planctomycetota", "label": "Planctomycetota", "count": 5, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA414036&tax_clade=PVC+group&tax_phylum=Planctomycetota", "selected": false}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 236.57213400019828}