{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"diamond\", bioproject = \"PRJNA407368\" and tax_phylum = \"Actinomycetota\"", "rows": [[13168975, "PRJNA407368_S_NODE_971_length_648_cov_4.794830_g897_i0", "PRJNA407368", "971", "648", "4.79483", "31.0704984", "unclassified Actinomyces", "2609248", "Bacteria", "Bacteria", "229", "3.87e-72", "", "NR", "WP_065427139.1", "2609248", "g897", "i0", "88.9", "0.625", "135", "14", "62", "1", "404", "3", "5", "139", "WP_065427139.1 MULTISPECIES: response regulator transcription factor [unclassified Actinomyces]", "diamond", "405", "229", "1", "Bacteria", null, "Bacillati", "Actinomycetota", "Actinomycetes", "Actinomycetales", "Actinomycetaceae", "Actinomyces", null], [17659261, "PRJNA407368_S_NODE_4694_length_260_cov_7.480519_g4592_i0", "PRJNA407368", "4694", "260", "7.480519", "19.4493494", "Bacteria", "2", "Bacteria", "Bacteria", "144", "1.24e-37", "", "NR", "WP_204011322.1", "795644", "g4592", "i0", "75.6", "78.75", "86", "21", "99.2", "0", "1", "258", "685", "770", "WP_204011322.1 aminomethyl-transferring glycine dehydrogenase [Sphaerimonospora thailandensis]", "diamond", "20475", "144", "1", "Bacteria", null, "Bacillati", "Actinomycetota", "Actinomycetes", "Streptosporangiales", "Streptosporangiaceae", "Sphaerimonospora", "Sphaerimonospora thailandensis"], [26663634, "PRJNA407368_S_NODE_5381_length_236_cov_4.019324_g5279_i0", "PRJNA407368", "5381", "236", "4.019324", "9.48560464", "Candidatus Nanopelagicales bacterium", "2518612", "Bacteria", "Bacteria", "46.6", "5.94e-4", "", "NR", "MDZ4248651.1", "2518612", "g5279", "i0", "45.5", "0.699152542372881", "55", "29", "69.9", "1", "166", "2", "1", "54", "MDZ4248651.1 HNH endonuclease [Candidatus Nanopelagicales bacterium]", "diamond", "165", "46.6", "1", "Bacteria", null, "Bacillati", "Actinomycetota", "Actinomycetes", "Candidatus Nanopelagicales", null, null, "Candidatus Nanopelagicales bacterium"], [26980466, "PRJNA407368_S_NODE_5902_length_222_cov_3.331606_g5800_i0", "PRJNA407368", "5902", "222", "3.331606", "7.39616532", "Agromyces sp. LHK192", "2498704", "Bacteria", "Bacteria", "42.7", "0.0283", "", "NR", "WP_127792068.1", "2498704", "g5800", "i0", "39.1", "0.864864864864865", "64", "32", "77", "1", "32", "202", "155", "218", "WP_127792068.1 family 78 glycoside hydrolase catalytic domain [Agromyces sp. LHK192]", "diamond", "192", "42.7", "1", "Bacteria", null, "Bacillati", "Actinomycetota", "Actinomycetes", "Micrococcales", "Microbacteriaceae", "Agromyces", "Agromyces sp. LHK192"], [27896589, "PRJNA407368_S_NODE_6605_length_206_cov_4.039548_g6503_i0", "PRJNA407368", "6605", "206", "4.039548", "8.32146888", "Corynebacterium sp. MSK", "1720", "Bacteria", "Bacteria", "63.2", "5.21e-10", "", "NR", "WP_284799116.1", "3377090", "g6503", "i0", "60.5", "3.11650485436893", "38", "15", "55.3", "0", "201", "88", "111", "148", "WP_284799116.1 HNH endonuclease signature motif containing protein [Corynebacterium kefirresidentii]", "diamond", "642", "63.2", "1", "Bacteria", null, "Bacillati", "Actinomycetota", "Actinomycetes", "Mycobacteriales", "Corynebacteriaceae", "Corynebacterium", "Corynebacterium sp. MSK071"], [28338788, "PRJNA407368_S_NODE_8546_length_174_cov_2.179310_g8444_i0", "PRJNA407368", "8546", "174", "2.17931", "3.7919994", "Intrasporangium sp.", "1925024", "Bacteria", "Bacteria", "42", "0.00463", "", "NR", "WP_331928557.1", "1925024", "g8444", "i0", "53.5", "1.72413793103448", "43", "20", "74.1", "0", "174", "46", "18", "60", "WP_331928557.1 hypothetical protein [Intrasporangium sp.]", "diamond", "300", "42", "1", "Bacteria", null, "Bacillati", "Actinomycetota", "Actinomycetes", "Micrococcales", "Intrasporangiaceae", "Intrasporangium", "Intrasporangium sp."], [29632889, "PRJNA407368_S_NODE_7630_length_187_cov_2.468354_g7528_i0", "PRJNA407368", "7630", "187", "2.468354", "4.61582198", "Propionibacterium ruminifibrarum", "1962131", "Bacteria", "Bacteria", "41.6", "0.0434", "", "NR", "SPF69569.1", "1962131", "g7528", "i0", "68", "0.401069518716578", "25", "8", "40.1", "0", "78", "152", "17", "41", "SPF69569.1 hypothetical protein PROPJV5_2556, partial [Propionibacterium ruminifibrarum]", "diamond", "75", "41.6", "1", "Bacteria", null, "Bacillati", "Actinomycetota", "Actinomycetes", "Propionibacteriales", "Propionibacteriaceae", "Propionibacterium", "Propionibacterium ruminifibrarum"], [29871017, "PRJNA407368_S_NODE_1611_length_495_cov_7.040773_g1517_i0", "PRJNA407368", "1611", "495", "7.040773", "34.85182635", "Bacteria", "2", "Bacteria", "Bacteria", "107", "5.639999999999999e-24", "", "NR", "HAP89878.1", "1667", "g1517", "i0", "43.4", "1.65454545454545", "136", "71", "82.4", "2", "410", "3", "8", "137", "HAP89878.1 hypothetical protein [Arthrobacter sp.]", "diamond", "819", "107", "1", "Bacteria", null, "Bacillati", "Actinomycetota", "Actinomycetes", "Micrococcales", "Micrococcaceae", "Arthrobacter", "Arthrobacter sp."], [30075329, "PRJNA407368_S_NODE_4212_length_280_cov_7.446215_g4110_i0", "PRJNA407368", "4212", "280", "7.446215", "20.849402", "Rhodococcoides fascians", "1828", "Bacteria", "Bacteria", "49.3", "2.69e-4", "", "NR", "WP_032389217.1", "1828", "g4110", "i0", "32.2", "0.932142857142857", "87", "59", "93.2", "0", "18", "278", "9", "95", "WP_032389217.1 SGNH/GDSL hydrolase family protein [Rhodococcoides fascians]", "diamond", "261", "49.3", "1", "Bacteria", null, "Bacillati", "Actinomycetota", "Actinomycetes", "Mycobacteriales", "Nocardiaceae", "Rhodococcoides", "Rhodococcoides fascians"], [30454952, "PRJNA407368_S_NODE_1313_length_552_cov_3.864245_g1227_i0", "PRJNA407368", "1313", "552", "3.864245", "21.3306324", "Bifidobacterium pullorum", "78448", "Bacteria", "Bacteria", "154", "1.17e-44", "", "NR", "WP_204469887.1", "78448", "g1227", "i0", "64.8", "0.695652173913043", "128", "27", "59.8", "1", "193", "522", "4", "131", "WP_204469887.1 hypothetical protein, partial [Bifidobacterium pullorum]", "diamond", "384", "154", "1", "Bacteria", null, "Bacillati", "Actinomycetota", "Actinomycetes", "Bifidobacteriales", "Bifidobacteriaceae", "Bifidobacterium", "Bifidobacterium pullorum"], [30707291, "PRJNA407368_S_NODE_6374_length_211_cov_6.873626_g6272_i0", "PRJNA407368", "6374", "211", "6.873626", "14.50335086", "Lawsonella", "1847725", "Bacteria", "Bacteria", "149", "1.7799999999999994e-42", "", "NR", "WP_290599223.1", "1847725", "g6272", "i0", "100", "0.995260663507109", "70", "0", "99.5", "0", "210", "1", "157", "226", "WP_290599223.1 MULTISPECIES: DUF2993 domain-containing protein [Lawsonella]", "diamond", "210", "149", "1", "Bacteria", null, "Bacillati", "Actinomycetota", "Actinomycetes", "Mycobacteriales", "Lawsonellaceae", "Lawsonella", null], [30770709, "PRJNA407368_S_NODE_3514_length_313_cov_3.415493_g3412_i0", "PRJNA407368", "3514", "313", "3.415493", "10.69049309", "Streptosporangiaceae bacterium", "2339230", "Bacteria", "Bacteria", "45.8", "0.00659", "", "NR", "HEX3387831.1", "2339230", "g3412", "i0", "37.7", "1.33226837060703", "69", "43", "66.1", "0", "59", "265", "89", "157", "HEX3387831.1 epoxide hydrolase [Streptosporangiaceae bacterium]", "diamond", "417", "45.8", "1", "Bacteria", null, "Bacillati", "Actinomycetota", "Actinomycetes", "Streptosporangiales", "Streptosporangiaceae", null, "Streptosporangiaceae bacterium"], [30897125, "PRJNA407368_S_NODE_6274_length_214_cov_2.286486_g6172_i0", "PRJNA407368", "6274", "214", "2.286486", "4.89308004", "Ilumatobacteraceae bacterium", "2497619", "Bacteria", "Bacteria", "51.6", "2.04e-6", "", "NR", "HQY16693.1", "2497619", "g6172", "i0", "83.9", "0.434579439252336", "31", "3", "43.5", "1", "124", "32", "32", "60", "HQY16693.1 hypothetical protein [Ilumatobacteraceae bacterium]", "diamond", "93", "51.6", "1", "Bacteria", null, "Bacillati", "Actinomycetota", "Acidimicrobiia", "Acidimicrobiales", "Ilumatobacteraceae", null, "Ilumatobacteraceae bacterium"], [31055203, "PRJNA407368_S_NODE_8455_length_175_cov_2.301370_g8353_i0", "PRJNA407368", "8455", "175", "2.30137", "4.0273975", "uncultured Arthrobacter sp.", "114050", "Bacteria", "Bacteria", "56.6", "1.51e-7", "", "NR", "WP_294567586.1", "114050", "g8353", "i0", "45.9", "1.04571428571429", "61", "28", "99.4", "2", "175", "2", "147", "205", "WP_294567586.1 hypothetical protein [uncultured Arthrobacter sp.]", "diamond", "183", "56.6", "1", "Bacteria", null, "Bacillati", "Actinomycetota", "Actinomycetes", "Micrococcales", "Micrococcaceae", "Arthrobacter", "uncultured Arthrobacter sp."], [31640701, "PRJNA407368_S_NODE_5576_length_230_cov_4.184080_g5474_i0", "PRJNA407368", "5576", "230", "4.18408", "9.623384", "Bacteria", "2", "Bacteria", "Bacteria", "97.1", "2.01e-22", "", "NR", "MFA7266888.1", "2518612", "g5474", "i0", "87.7", "1.48695652173913", "57", "7", "74.3", "0", "58", "228", "46", "102", "MFA7266888.1 indole-3-glycerol phosphate synthase TrpC [Candidatus Nanopelagicales bacterium]", "diamond", "342", "97.1", "1", "Bacteria", null, "Bacillati", "Actinomycetota", "Actinomycetes", "Candidatus Nanopelagicales", null, null, "Candidatus Nanopelagicales bacterium"], [31940230, "PRJNA407368_S_NODE_6637_length_205_cov_18.897727_g6535_i0", "PRJNA407368", "6637", "205", "18.897727", "38.74034035", "Gaiellaceae bacterium", "2838783", "Bacteria", "Bacteria", "42.7", "0.021", "", "NR", "HST17223.1", "2838783", "g6535", "i0", "49", "0.717073170731707", "49", "23", "68.8", "2", "184", "44", "32", "80", "HST17223.1 hypothetical protein [Gaiellaceae bacterium]", "diamond", "147", "42.7", "1", "Bacteria", null, "Bacillati", "Actinomycetota", "Thermoleophilia", "Gaiellales", "Gaiellaceae", null, "Gaiellaceae bacterium"]], "truncated": false, "filtered_table_rows_count": 16, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "diamond", "p1": "PRJNA407368", "p2": "Actinomycetota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA407368&tax_phylum=Actinomycetota", "results": [{"value": "PRJNA407368", "label": "PRJNA407368", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&tax_phylum=Actinomycetota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA407368&tax_phylum=Actinomycetota", "results": [{"value": "diamond", "label": "diamond", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA407368&tax_phylum=Actinomycetota", "selected": true}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA407368&tax_phylum=Actinomycetota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA407368&tax_phylum=Actinomycetota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA407368&tax_phylum=Actinomycetota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA407368&tax_phylum=Actinomycetota", "results": [{"value": "Bacillati", "label": "Bacillati", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA407368&tax_phylum=Actinomycetota&tax_kingdom=Bacillati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA407368&tax_phylum=Actinomycetota", "results": [{"value": "Actinomycetota", "label": "Actinomycetota", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA407368", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 312.4597010000798}