{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"diamond\", bioproject = \"PRJNA1160211\" and tax_phylum = \"Campylobacterota\"", "rows": [[28417962, "PRJNA1160211_S_NODE_288926_length_233_cov_3.368750_g287693_i0", "PRJNA1160211", "288926", "233", "3.36875", "7.8491875", "root", "1", "Root_unresolved", "Root_unresolved", "44.7", "0.00611", "", "NR", "GAA6795622.1", "210", "g287693", "i0", "47.2", "6.6824034334764", "36", "19", "46.4", "0", "65", "172", "122", "157", "GAA6795622.1 hypothetical protein Kyoto200A_0460 [Helicobacter pylori]", "diamond", "1557", "44.7", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [28512439, "PRJNA1160211_S_NODE_229347_length_280_cov_3.202899_g228114_i0", "PRJNA1160211", "229347", "280", "3.202899", "8.9681172", "Campylobacter", "194", "Bacteria", "Bacteria", "98.2", "1.73e-22", "", "NR", "WP_314991748.1", "218934", "g228114", "i0", "51.6", "1.99285714285714", "93", "45", "99.6", "0", "2", "280", "187", "279", "WP_314991748.1 type I restriction-modification enzyme R subunit C-terminal domain-containing protein, partial [uncultured Campylobacter sp.]", "diamond", "558", "98.6", "0.995943204868154", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "uncultured Campylobacter sp."], [29314116, "PRJNA1160211_S_NODE_214729_length_295_cov_0.986486_g213496_i0", "PRJNA1160211", "214729", "295", "0.986486", "2.9101337", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "82.4", "2.31e-18", "", "NR", "GAA9209002.1", "210", "g213496", "i0", "94.6", "0.376271186440678", "37", "2", "37.6", "0", "133", "243", "1", "37", "GAA9209002.1 hypothetical protein Kyoto198A_1420 [Helicobacter pylori]", "diamond", "111", "82.4", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [29692631, "PRJNA1160211_S_NODE_137370_length_393_cov_6.550000_g136138_i0", "PRJNA1160211", "137370", "393", "6.55", "25.7415", "Campylobacter ureolyticus", "827", "Bacteria", "Bacteria", "252", "3.48e-81", "", "NR", "WP_016646459.1", "827", "g136138", "i0", "98.5", "1", "131", "2", "100", "0", "393", "1", "179", "309", "WP_016646459.1 type II asparaginase [Campylobacter ureolyticus]", "diamond", "393", "252", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter ureolyticus"], [31051736, "PRJNA1160211_S_NODE_133455_length_399_cov_12.395706_g132223_i0", "PRJNA1160211", "133455", "399", "12.395706", "49.45886694", "Campylobacterota bacterium", "2026809", "Bacteria", "Bacteria", "75.1", "4.73e-13", "", "NR", "MCL4431196.1", "2026809", "g132223", "i0", "50", "0.661654135338346", "88", "32", "65.4", "2", "77", "337", "159", "235", "MCL4431196.1 hypothetical protein [Campylobacterota bacterium]", "diamond", "264", "75.1", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", null, null, null, null, "Campylobacterota bacterium"], [32632490, "PRJNA1160211_S_NODE_257180_length_256_cov_1.683060_g255947_i0", "PRJNA1160211", "257180", "256", "1.68306", "4.3086336", "Helicobacter pylori", "210", "Bacteria", "Bacteria", "63.9", "1.62e-11", "", "NR", "WP_316480680.1", "210", "g255947", "i0", "92.6", "0.31640625", "27", "2", "31.6", "0", "134", "214", "1", "27", "WP_316480680.1 hypothetical protein [Helicobacter pylori]", "diamond", "81", "63.9", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter pylori"], [32664044, "PRJNA1160211_S_NODE_254520_length_258_cov_1.994595_g253287_i0", "PRJNA1160211", "254520", "258", "1.994595", "5.1460551", "Helicobacter sp. 12S", "218", "Bacteria", "Bacteria", "73.6", "6.2e-13", "", "NR", "WP_257875431.1", "1476197", "g253287", "i0", "57.9", "1.32558139534884", "57", "24", "66.3", "0", "173", "3", "1", "57", "WP_257875431.1 acetate--CoA ligase family protein [Helicobacter sp. 12S02232-10]", "diamond", "342", "73.6", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter sp. 12S02232-10"]], "truncated": false, "filtered_table_rows_count": 7, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "diamond", "p1": "PRJNA1160211", "p2": "Campylobacterota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1160211&tax_phylum=Campylobacterota", "results": [{"value": "PRJNA1160211", "label": "PRJNA1160211", "count": 7, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1160211&tax_phylum=Campylobacterota", "results": [{"value": "diamond", "label": "diamond", "count": 7, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1160211&tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1160211&tax_phylum=Campylobacterota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 7, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1160211&tax_phylum=Campylobacterota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1160211&tax_phylum=Campylobacterota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1160211&tax_phylum=Campylobacterota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 7, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1160211&tax_phylum=Campylobacterota&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1160211&tax_phylum=Campylobacterota", "results": [{"value": "Campylobacterota", "label": "Campylobacterota", "count": 7, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1160211", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 201.88584800052922}