{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"diamond\", bioproject = \"PRJNA1145997\" and tax_phylum = \"Spirochaetota\"", "rows": [[4116583, "PRJNA1145997_P_NODE_42244_length_253_cov_0.866667_g39625_i0", "PRJNA1145997", "42244", "253", "0.866667", "2.19266751", "Treponema sp.", "166", "Bacteria", "Bacteria", "153", "2.04e-44", "", "NR", "MFC2331347.1", "166", "g39625", "i0", "96.4", "0.99604743083004", "84", "3", "99.6", "0", "2", "253", "119", "202", "MFC2331347.1 hypothetical protein [Treponema sp.]", "diamond", "252", "153", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema sp."], [26943904, "PRJNA1145997_P_NODE_43042_length_252_cov_0.871508_g40423_i0", "PRJNA1145997", "43042", "252", "0.871508", "2.19620016", "Treponema sp.", "166", "Bacteria", "Bacteria", "99.4", "3.919999999999999e-23", "", "NR", "MBR6192798.1", "166", "g40423", "i0", "56", "1.78571428571429", "75", "33", "89.3", "0", "2", "226", "166", "240", "MBR6192798.1 DUF1566 domain-containing protein [Treponema sp.]", "diamond", "450", "99.4", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema sp."], [27196816, "PRJNA1145997_P_NODE_43362_length_251_cov_0.876404_g40743_i0", "PRJNA1145997", "43362", "251", "0.876404", "2.19977404", "Treponema maltophilum", "51160", "Bacteria", "Bacteria", "117", "4.4199999999999997e-32", "", "NR", "WP_016526190.1", "51160", "g40743", "i0", "98.4", "0.729083665338645", "61", "1", "72.9", "0", "68", "250", "1", "61", "WP_016526190.1 50S ribosomal protein L24 [Treponema maltophilum]", "diamond", "183", "117", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema maltophilum"], [27323483, "PRJNA1145997_P_NODE_29563_length_394_cov_0.971963_g26945_i0", "PRJNA1145997", "29563", "394", "0.971963", "3.82953422", "Treponema", "157", "Bacteria", "Bacteria", "147", "6.45e-38", "", "NR", "WP_212566029.1", "157", "g26945", "i0", "67.2", "0.99746192893401", "131", "43", "99.7", "0", "1", "393", "152", "282", "WP_212566029.1 MULTISPECIES: tetratricopeptide repeat protein [Treponema]", "diamond", "393", "147", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", null], [27670997, "PRJNA1145997_P_NODE_32904_length_335_cov_1.190840_g30285_i0", "PRJNA1145997", "32904", "335", "1.19084", "3.989314", "Treponema medium", "58231", "Bacteria", "Bacteria", "184", "4.56e-56", "", "NR", "WP_016522775.1", "58231", "g30285", "i0", "85.8", "1.88059701492537", "106", "14", "94.9", "1", "3", "320", "150", "254", "WP_016522775.1 FKBP-type peptidyl-prolyl cis-trans isomerase [Treponema medium]", "diamond", "630", "184", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema medium"], [27671002, "PRJNA1145997_P_NODE_42924_length_252_cov_0.871508_g40305_i0", "PRJNA1145997", "42924", "252", "0.871508", "2.19620016", "Treponema sp.", "166", "Bacteria", "Bacteria", "74.7", "1.29e-13", "", "NR", "MFC2602923.1", "166", "g40305", "i0", "100", "0.428571428571429", "36", "0", "42.9", "0", "2", "109", "282", "317", "MFC2602923.1 glycosyltransferase [Treponema sp.]", "diamond", "108", "74.7", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema sp."], [27955034, "PRJNA1145997_P_NODE_43505_length_251_cov_0.876404_g40886_i0", "PRJNA1145997", "43505", "251", "0.876404", "2.19977404", "Treponema sp. Marseille-Q39", "166", "Bacteria", "Bacteria", "167", "7.62e-48", "", "NR", "WP_370586896.1", "2766703", "g40886", "i0", "100", "0.99203187250996006", "83", "0", "99.2", "0", "250", "2", "265", "347", "WP_370586896.1 tetratricopeptide repeat protein [Treponema sp. Marseille-Q3903]", "diamond", "249", "167", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema sp. Marseille-Q3903"], [28681355, "PRJNA1145997_P_NODE_41467_length_257_cov_1.695652_g38848_i0", "PRJNA1145997", "41467", "257", "1.695652", "4.35782564", "Treponema sp. Marseille-Q39", "166", "Bacteria", "Bacteria", "188", "1.9099999999999994e-55", "", "NR", "WP_187382825.1", "2766703", "g38848", "i0", "100", "0.992217898832685", "85", "0", "99.2", "0", "2", "256", "113", "197", "WP_187382825.1 BCCT family transporter [Treponema sp. Marseille-Q3903]", "diamond", "255", "188", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema sp. Marseille-Q3903"], [29155054, "PRJNA1145997_P_NODE_47589_length_244_cov_1.473684_g44970_i0", "PRJNA1145997", "47589", "244", "1.473684", "3.59578896", "Treponema pedis", "409322", "Bacteria", "Bacteria", "129", "2.15e-33", "", "NR", "MEL5718652.1", "409322", "g44970", "i0", "78.8", "1.9672131147541", "80", "17", "98.4", "0", "242", "3", "348", "427", "MEL5718652.1 hypothetical protein [Treponema pedis]", "diamond", "480", "129", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema pedis"], [29344326, "PRJNA1145997_P_NODE_45169_length_248_cov_0.891429_g42550_i0", "PRJNA1145997", "45169", "248", "0.891429", "2.21074392", "Treponema sp. Marseille-Q39", "166", "Bacteria", "Bacteria", "155", "2.1099999999999998e-43", "", "NR", "WP_187381621.1", "2766703", "g42550", "i0", "97.6", "0.991935483870968", "82", "2", "99.2", "0", "1", "246", "252", "333", "WP_187381621.1 ComEC/Rec2 family competence protein [Treponema sp. Marseille-Q3903]", "diamond", "246", "155", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema sp. Marseille-Q3903"], [29786164, "PRJNA1145997_P_NODE_44711_length_249_cov_0.886364_g42092_i0", "PRJNA1145997", "44711", "249", "0.886364", "2.20704636", "Treponema sp.", "166", "Bacteria", "Bacteria", "73.2", "7.83e-13", "", "NR", "MCF0241240.1", "166", "g42092", "i0", "51.5", "3.53012048192771", "66", "32", "79.5", "0", "46", "243", "399", "464", "MCF0241240.1 TRAP transporter large permease subunit [Treponema sp.]", "diamond", "879", "73.2", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema sp."], [30165164, "PRJNA1145997_P_NODE_45172_length_248_cov_0.891429_g42553_i0", "PRJNA1145997", "45172", "248", "0.891429", "2.21074392", "Treponema maltophilum", "51160", "Bacteria", "Bacteria", "121", "8.049999999999999e-31", "", "NR", "WP_016526057.1", "51160", "g42553", "i0", "67.1", "0.991935483870968", "82", "27", "99.2", "0", "2", "247", "157", "238", "WP_016526057.1 hypothetical protein [Treponema maltophilum]", "diamond", "246", "121", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema maltophilum"], [30449954, "PRJNA1145997_P_NODE_42013_length_254_cov_1.292818_g39394_i0", "PRJNA1145997", "42013", "254", "1.292818", "3.28375772", "Treponema maltophilum", "51160", "Bacteria", "Bacteria", "177", "7.64e-52", "", "NR", "WP_016524473.1", "51160", "g39394", "i0", "100", "1.98425196850394", "84", "0", "99.2", "0", "3", "254", "194", "277", "WP_016524473.1 radical SAM protein [Treponema maltophilum]", "diamond", "504", "177", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema maltophilum"], [31101985, "PRJNA1145997_P_NODE_47795_length_244_cov_0.912281_g45176_i0", "PRJNA1145997", "47795", "244", "0.912281", "2.22596564", "Treponema", "157", "Bacteria", "Bacteria", "122", "4.83e-30", "", "NR", "WP_253681399.1", "158", "g45176", "i0", "71.4", "4.75819672131148", "77", "22", "94.7", "0", "242", "12", "694", "770", "WP_253681399.1 DUF4625 domain-containing protein [Treponema denticola]", "diamond", "1161", "122", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema denticola"], [31176121, "PRJNA1145997_P_NODE_34955_length_310_cov_1.316456_g32336_i0", "PRJNA1145997", "34955", "310", "1.316456", "4.0810136", "Treponema vincentii", "69710", "Bacteria", "Bacteria", "178", "6.3e-51", "", "NR", "WP_155997587.1", "69710", "g32336", "i0", "84.5", "1.99354838709677", "103", "16", "99.7", "0", "2", "310", "40", "142", "WP_155997587.1 hypothetical protein [Treponema vincentii]", "diamond", "618", "178", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema vincentii"], [31671286, "PRJNA1145997_P_NODE_48537_length_243_cov_0.917647_g45918_i0", "PRJNA1145997", "48537", "243", "0.917647", "2.22988221", "Bacteria", "2", "Bacteria", "Bacteria", "101", "5.56e-25", "", "NR", "NLK06521.1", "2026792", "g45918", "i0", "62", "1.74074074074074", "71", "27", "87.7", "0", "29", "241", "1", "71", "NLK06521.1 chromate transporter [Spirochaetales bacterium]", "diamond", "423", "102", "0.990196078431373", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", null, null, "Spirochaetales bacterium"], [32019317, "PRJNA1145997_P_NODE_48558_length_243_cov_0.917647_g45939_i0", "PRJNA1145997", "48558", "243", "0.917647", "2.22988221", "Treponema", "157", "Bacteria", "Bacteria", "136", "4.27e-36", "", "NR", "WP_016523076.1", "58231", "g45939", "i0", "87.3", "1.95061728395062", "79", "10", "97.5", "0", "2", "238", "18", "96", "WP_016523076.1 trigger factor [Treponema medium]", "diamond", "474", "136", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema medium"], [32505236, "PRJNA1145997_P_NODE_45139_length_248_cov_0.891429_g42520_i0", "PRJNA1145997", "45139", "248", "0.891429", "2.21074392", "Treponema maltophilum", "51160", "Bacteria", "Bacteria", "156", "6.12e-44", "", "NR", "WP_016526577.1", "51160", "g42520", "i0", "97.6", "1.98387096774194", "82", "2", "99.2", "0", "247", "2", "221", "302", "WP_016526577.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase [Treponema maltophilum]", "diamond", "492", "156", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema maltophilum"], [32536898, "PRJNA1145997_P_NODE_47019_length_245_cov_0.906977_g44400_i0", "PRJNA1145997", "47019", "245", "0.906977", "2.22209365", "Treponema maltophilum", "51160", "Bacteria", "Bacteria", "118", "5.37e-29", "", "NR", "WP_016526287.1", "51160", "g44400", "i0", "82.6", "1.68979591836735", "69", "12", "84.5", "0", "3", "209", "487", "555", "WP_016526287.1 DUF4153 domain-containing protein [Treponema maltophilum]", "diamond", "414", "118", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema maltophilum"]], "truncated": false, "filtered_table_rows_count": 19, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "diamond", "p1": "PRJNA1145997", "p2": "Spirochaetota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1145997&tax_phylum=Spirochaetota", "results": [{"value": "PRJNA1145997", "label": "PRJNA1145997", "count": 19, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&tax_phylum=Spirochaetota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1145997&tax_phylum=Spirochaetota", "results": [{"value": "diamond", "label": "diamond", "count": 19, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1145997&tax_phylum=Spirochaetota", "selected": true}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1145997&tax_phylum=Spirochaetota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 19, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1145997&tax_phylum=Spirochaetota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1145997&tax_phylum=Spirochaetota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1145997&tax_phylum=Spirochaetota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 19, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1145997&tax_phylum=Spirochaetota&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1145997&tax_phylum=Spirochaetota", "results": [{"value": "Spirochaetota", "label": "Spirochaetota", "count": 19, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1145997", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 358.58916400320595}