{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"diamond\", bioproject = \"PRJNA1123309\" and tax_phylum = \"Gemmatimonadota\"", "rows": [[13032171, "PRJNA1123309_P_NODE_55591_length_248_cov_0.891429_g55211_i0", "PRJNA1123309", "55591", "248", "0.891429", "2.21074392", "Gemmatirosa sp.", "2510638", "Bacteria", "Bacteria", "122", "3.5899999999999995e-32", "", "NR", "HEY0780140.1", "2510638", "g55211", "i0", "71.6", "0.979838709677419", "81", "23", "98", "0", "246", "4", "42", "122", "HEY0780140.1 CheB methylesterase domain-containing protein [Gemmatirosa sp.]", "diamond", "243", "122", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", "Gemmatimonadia", "Gemmatimonadales", "Gemmatimonadaceae", "Gemmatirosa", "Gemmatirosa sp."], [26679327, "PRJNA1123309_P_NODE_47981_length_253_cov_0.866667_g47601_i0", "PRJNA1123309", "47981", "253", "0.866667", "2.19266751", "Gemmatirosa", "1706036", "Bacteria", "Bacteria", "136", "5.08e-36", "", "NR", "WP_025415014.1", "861299", "g47601", "i0", "81", "3.77075098814229", "79", "15", "93.7", "0", "251", "15", "339", "417", "WP_025415014.1 acetylxylan esterase [Gemmatirosa kalamazoonensis]", "diamond", "954", "136", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", "Gemmatimonadia", "Gemmatimonadales", "Gemmatimonadaceae", "Gemmatirosa", "Gemmatirosa kalamazoonensis"], [27059411, "PRJNA1123309_P_NODE_65722_length_242_cov_0.923077_g65342_i0", "PRJNA1123309", "65722", "242", "0.923077", "2.23384634", "Gemmatimonas", "173479", "Bacteria", "Bacteria", "42", "0.0426", "", "NR", "WP_291162412.1", "1946568", "g65342", "i0", "57.6", "1.22727272727273", "33", "14", "40.9", "0", "20", "118", "134", "166", "WP_291162412.1 hypothetical protein [Gemmatimonas sp. UBA7669]", "diamond", "297", "42", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", "Gemmatimonadia", "Gemmatimonadales", "Gemmatimonadaceae", "Gemmatimonas", "Gemmatimonas sp. UBA7669"], [27639046, "PRJNA1123309_P_NODE_50524_length_251_cov_0.876404_g50144_i0", "PRJNA1123309", "50524", "251", "0.876404", "2.19977404", "Gemmatimonadota bacterium", "2026742", "Bacteria", "Bacteria", "61.6", "3.53e-9", "", "NR", "MBI3792292.1", "2026742", "g50144", "i0", "56.5", "3.1792828685259", "62", "22", "71.7", "2", "186", "7", "13", "71", "MBI3792292.1 SCO family protein [Gemmatimonadota bacterium]", "diamond", "798", "61.6", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", null, null, null, null, "Gemmatimonadota bacterium"], [27765367, "PRJNA1123309_P_NODE_38104_length_275_cov_1.534653_g37724_i0", "PRJNA1123309", "38104", "275", "1.534653", "4.22029575", "Longimicrobiales bacterium", "2910168", "Bacteria", "Bacteria", "171", "1.07e-47", "", "NR", "HEX6559043.1", "2910168", "g37724", "i0", "85.6", "1.96363636363636", "90", "13", "98.2", "0", "2", "271", "561", "650", "HEX6559043.1 outer membrane protein assembly factor BamA [Longimicrobiales bacterium]", "diamond", "540", "171", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", "Longimicrobiia", "Longimicrobiales", null, null, "Longimicrobiales bacterium"], [28396626, "PRJNA1123309_P_NODE_62566_length_244_cov_0.912281_g62186_i0", "PRJNA1123309", "62566", "244", "0.912281", "2.22596564", "Gemmatimonadaceae bacterium", "2026741", "Bacteria", "Bacteria", "117", "2.7000000000000003e-28", "", "NR", "HEX2779855.1", "2026741", "g62186", "i0", "66.7", "0.959016393442623", "78", "26", "95.9", "0", "236", "3", "735", "812", "HEX2779855.1 carboxypeptidase regulatory-like domain-containing protein [Gemmatimonadaceae bacterium]", "diamond", "234", "117", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", "Gemmatimonadia", "Gemmatimonadales", "Gemmatimonadaceae", null, "Gemmatimonadaceae bacterium"], [28543946, "PRJNA1123309_P_NODE_57807_length_247_cov_0.896552_g57427_i0", "PRJNA1123309", "57807", "247", "0.896552", "2.21448344", "Bacteria", "2", "Bacteria", "Bacteria", "116", "6.91e-30", "", "NR", "MDQ3208438.1", "2026742", "g57427", "i0", "90", "1.7004048582996", "70", "7", "85", "0", "38", "247", "1", "70", "MDQ3208438.1 cytochrome c [Gemmatimonadota bacterium]", "diamond", "420", "116", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", null, null, null, null, "Gemmatimonadota bacterium"], [28870174, "PRJNA1123309_P_NODE_38968_length_273_cov_1.475000_g38588_i0", "PRJNA1123309", "38968", "273", "1.475", "4.02675", "Gemmatimonadales bacterium", "2448054", "Bacteria", "Bacteria", "48.1", "3.96e-4", "", "NR", "HEX9705446.1", "2448054", "g38588", "i0", "38.8", "0.934065934065934", "85", "48", "89", "1", "28", "270", "20", "104", "HEX9705446.1 hypothetical protein [Gemmatimonadales bacterium]", "diamond", "255", "48.1", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", "Gemmatimonadia", "Gemmatimonadales", null, null, "Gemmatimonadales bacterium"], [28901640, "PRJNA1123309_P_NODE_5688_length_614_cov_0.955638_g5339_i0", "PRJNA1123309", "5688", "614", "0.955638", "5.86761732", "Gemmatimonadaceae bacterium", "2026741", "Bacteria", "Bacteria", "47.8", "0.0154", "", "NR", "HEY4130013.1", "2026741", "g5339", "i0", "34", "0.503257328990228", "103", "60", "47.4", "3", "372", "82", "169", "269", "HEY4130013.1 DNA recombination protein RmuC [Gemmatimonadaceae bacterium]", "diamond", "309", "47.8", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", "Gemmatimonadia", "Gemmatimonadales", "Gemmatimonadaceae", null, "Gemmatimonadaceae bacterium"], [29406963, "PRJNA1123309_P_NODE_64689_length_243_cov_0.917647_g64309_i0", "PRJNA1123309", "64689", "243", "0.917647", "2.22988221", "Gemmatimonadales bacterium", "2448054", "Bacteria", "Bacteria", "56.6", "4.95e-7", "", "NR", "HEY7611715.1", "2448054", "g64309", "i0", "54.3", "0.567901234567901", "46", "20", "55.6", "1", "31", "165", "430", "475", "HEY7611715.1 PAS domain S-box protein [Gemmatimonadales bacterium]", "diamond", "138", "56.6", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", "Gemmatimonadia", "Gemmatimonadales", null, null, "Gemmatimonadales bacterium"], [29533321, "PRJNA1123309_P_NODE_6990_length_562_cov_1.196319_g6629_i0", "PRJNA1123309", "6990", "562", "1.196319", "6.72331278", "Gemmatimonadetes bacterium T265", "2839016", "Bacteria", "Bacteria", "46.2", "0.0415", "", "NR", "GJG88030.1", "2839016", "g6629", "i0", "35.2", "0.469750889679715", "88", "48", "47", "2", "165", "428", "58", "136", "GJG88030.1 penicillin-binding protein [Gemmatimonadetes bacterium T265]", "diamond", "264", "46.2", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", null, null, null, null, "Gemmatimonadetes bacterium T265"], [30291780, "PRJNA1123309_P_NODE_64692_length_243_cov_0.917647_g64312_i0", "PRJNA1123309", "64692", "243", "0.917647", "2.22988221", "Gemmatimonadales bacterium", "2448054", "Bacteria", "Bacteria", "118", "1.08e-29", "", "NR", "HJR15400.1", "2448054", "g64312", "i0", "76.6", "1.88888888888889", "77", "16", "95.1", "1", "234", "4", "263", "337", "HJR15400.1 hypothetical protein [Gemmatimonadales bacterium]", "diamond", "459", "118", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", "Gemmatimonadia", "Gemmatimonadales", null, null, "Gemmatimonadales bacterium"], [30575471, "PRJNA1123309_P_NODE_42973_length_263_cov_1.410526_g42593_i0", "PRJNA1123309", "42973", "263", "1.410526", "3.70968338", "Longimicrobium sp.", "2029185", "Bacteria", "Bacteria", "42.7", "0.0443", "", "NR", "HVH13180.1", "2029185", "g42593", "i0", "37.3", "0.855513307984791", "75", "42", "82.1", "2", "253", "38", "141", "213", "HVH13180.1 diguanylate cyclase [Longimicrobium sp.]", "diamond", "225", "42.7", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", "Longimicrobiia", "Longimicrobiales", "Longimicrobiaceae", "Longimicrobium", "Longimicrobium sp."], [30891839, "PRJNA1123309_P_NODE_60634_length_245_cov_0.906977_g60254_i0", "PRJNA1123309", "60634", "245", "0.906977", "2.22209365", "Gemmatimonadaceae bacterium", "2026741", "Bacteria", "Bacteria", "165", "2.7399999999999997e-48", "", "NR", "MFL5562939.1", "2026741", "g60254", "i0", "93.6", "0.955102040816327", "78", "5", "95.5", "0", "6", "239", "227", "304", "MFL5562939.1 lipoate--protein ligase [Gemmatimonadaceae bacterium]", "diamond", "234", "165", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", "Gemmatimonadia", "Gemmatimonadales", "Gemmatimonadaceae", null, "Gemmatimonadaceae bacterium"], [31966643, "PRJNA1123309_P_NODE_48078_length_253_cov_0.866667_g47698_i0", "PRJNA1123309", "48078", "253", "0.866667", "2.19266751", "Gemmatimonadota bacterium", "2026742", "Bacteria", "Bacteria", "56.2", "2.25e-7", "", "NR", "MBK7786953.1", "2026742", "g47698", "i0", "40.5", "0.936758893280632", "79", "37", "92.5", "2", "237", "4", "101", "170", "MBK7786953.1 hypothetical protein [Gemmatimonadota bacterium]", "diamond", "237", "56.2", "1", "Bacteria", "FCB group", "Pseudomonadati", "Gemmatimonadota", null, null, null, null, "Gemmatimonadota bacterium"]], "truncated": false, "filtered_table_rows_count": 15, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "diamond", "p1": "PRJNA1123309", "p2": "Gemmatimonadota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1123309&tax_phylum=Gemmatimonadota", "results": [{"value": "PRJNA1123309", "label": "PRJNA1123309", "count": 15, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&tax_phylum=Gemmatimonadota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1123309&tax_phylum=Gemmatimonadota", "results": [{"value": "diamond", "label": "diamond", "count": 15, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1123309&tax_phylum=Gemmatimonadota", "selected": true}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1123309&tax_phylum=Gemmatimonadota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 15, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1123309&tax_phylum=Gemmatimonadota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1123309&tax_phylum=Gemmatimonadota", "results": [{"value": "FCB group", "label": "FCB group", "count": 15, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1123309&tax_phylum=Gemmatimonadota&tax_clade=FCB+group", "selected": false}], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1123309&tax_phylum=Gemmatimonadota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 15, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1123309&tax_phylum=Gemmatimonadota&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1123309&tax_phylum=Gemmatimonadota", "results": [{"value": "Gemmatimonadota", "label": "Gemmatimonadota", "count": 15, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1123309", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 204.54355599940754}