{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"diamond\", bioproject = \"PRJNA1074407\" and tax_phylum = \"Pseudomonadota\"", "rows": [[188405, "PRJNA1074407_P_NODE_121341_length_284_cov_1.080569_g117503_i0", "PRJNA1074407", "121341", "284", "1.080569", "3.06881596", "Cupriavidus", "106589", "Bacteria", "Bacteria", "196", "1.08e-61", "", "NR", "WP_029700394.1", "106589", "g117503", "i0", "98.9", "0.992957746478873", "94", "1", "99.3", "0", "282", "1", "125", "218", "WP_029700394.1 MULTISPECIES: hypothetical protein [Cupriavidus]", "diamond", "282", "196", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Betaproteobacteria", "Burkholderiales", "Burkholderiaceae", "Cupriavidus", null], [2739033, "PRJNA1074407_P_NODE_122043_length_282_cov_1.186603_g118205_i0", "PRJNA1074407", "122043", "282", "1.186603", "3.34622046", "Hyphomicrobiales", "356", "Bacteria", "Bacteria", "162", "2.5e-47", "", "NR", "WP_261519346.1", "515947", "g118205", "i0", "82.8", "17.8085106382979", "93", "16", "98.9", "0", "2", "280", "167", "259", "WP_261519346.1 DUF692 domain-containing protein [Chelativorans intermedius]", "diamond", "5022", "162", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Alphaproteobacteria", "Hyphomicrobiales", "Phyllobacteriaceae", "Chelativorans", "Chelativorans intermedius"], [26687544, "PRJNA1074407_P_NODE_90161_length_386_cov_1.597444_g86324_i0", "PRJNA1074407", "90161", "386", "1.597444", "6.16613384", "Hyphomicrobiales bacterium", "1909294", "Bacteria", "Bacteria", "45.8", "0.0134", "", "NR", "MBN8976055.1", "1909294", "g86324", "i0", "30.4", "0.613989637305699", "79", "54", "60.6", "1", "303", "70", "111", "189", "MBN8976055.1 outer membrane beta-barrel protein [Hyphomicrobiales bacterium]", "diamond", "237", "45.8", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Alphaproteobacteria", "Hyphomicrobiales", null, null, "Hyphomicrobiales bacterium"], [27067361, "PRJNA1074407_P_NODE_72982_length_472_cov_1.428571_g69148_i0", "PRJNA1074407", "72982", "472", "1.428571", "6.74285512", "Halioglobus sp.", "2024834", "Bacteria", "Bacteria", "45.1", "0.0497", "", "NR", "MFT6337409.1", "2024834", "g69148", "i0", "33.3", "0.533898305084746", "84", "52", "52.1", "2", "339", "94", "252", "333", "MFT6337409.1 hypothetical protein [Halioglobus sp.]", "diamond", "252", "45.1", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Cellvibrionales", "Halieaceae", "Halioglobus", "Halioglobus sp."], [27731129, "PRJNA1074407_P_NODE_99584_length_350_cov_0.989170_g95746_i0", "PRJNA1074407", "99584", "350", "0.98917", "3.462095", "Cupriavidus", "106589", "Bacteria", "Bacteria", "138", "7.64e-39", "", "NR", "WP_024569826.1", "106589", "g95746", "i0", "98.7", "0.66", "77", "1", "66", "0", "119", "349", "1", "77", "WP_024569826.1 MULTISPECIES: helix-turn-helix domain-containing protein [Cupriavidus]", "diamond", "231", "138", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Betaproteobacteria", "Burkholderiales", "Burkholderiaceae", "Cupriavidus", null], [28393802, "PRJNA1074407_P_NODE_148206_length_228_cov_3.477419_g144368_i0", "PRJNA1074407", "148206", "228", "3.477419", "7.92851532", "Ralstonia thomasii", "3058596", "Bacteria", "Bacteria", "147", "3.22e-40", "", "NR", "CAJ0873079.1", "3058596", "g144368", "i0", "93.4", "2", "76", "5", "100", "0", "228", "1", "138", "213", "CAJ0873079.1 hypothetical protein R6138_01897 [Ralstonia thomasii]", "diamond", "456", "147", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Betaproteobacteria", "Burkholderiales", "Burkholderiaceae", "Ralstonia", "Ralstonia thomasii"], [30004324, "PRJNA1074407_P_NODE_136951_length_248_cov_0.868571_g133113_i0", "PRJNA1074407", "136951", "248", "0.868571", "2.15405608", "Cupriavidus taiwanensis", "164546", "Bacteria", "Bacteria", "139", "3.3e-39", "", "NR", "WP_116369713.1", "164546", "g133113", "i0", "74.4", "0.991935483870968", "82", "21", "99.2", "0", "1", "246", "92", "173", "WP_116369713.1 hypothetical protein [Cupriavidus taiwanensis]", "diamond", "246", "139", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Betaproteobacteria", "Burkholderiales", "Burkholderiaceae", "Cupriavidus", "Cupriavidus taiwanensis"], [30572698, "PRJNA1074407_P_NODE_140773_length_244_cov_2.959064_g136935_i0", "PRJNA1074407", "140773", "244", "2.959064", "7.22011616", "Gammaproteobacteria bacterium", "1913989", "Bacteria", "Bacteria", "43.9", "0.00659", "", "NR", "MDD9818740.1", "1913989", "g136935", "i0", "41.9", "0.528688524590164", "43", "25", "52.9", "0", "219", "91", "50", "92", "MDD9818740.1 hypothetical protein [Gammaproteobacteria bacterium]", "diamond", "129", "43.9", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", null, null, null, "Gammaproteobacteria bacterium"], [31015272, "PRJNA1074407_P_NODE_125395_length_273_cov_1.270000_g121557_i0", "PRJNA1074407", "125395", "273", "1.27", "3.4671", "Cupriavidus", "106589", "Bacteria", "Bacteria", "140", "1.86e-39", "", "NR", "WP_024569832.1", "106589", "g121557", "i0", "98.6", "0.769230769230769", "70", "1", "76.9", "0", "271", "62", "151", "220", "WP_024569832.1 MULTISPECIES: DUF2612 domain-containing protein [Cupriavidus]", "diamond", "210", "140", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Betaproteobacteria", "Burkholderiales", "Burkholderiaceae", "Cupriavidus", null], [31363142, "PRJNA1074407_P_NODE_125536_length_273_cov_1.055000_g121698_i0", "PRJNA1074407", "125536", "273", "1.055", "2.88015", "Xylella fastidiosa", "2371", "Bacteria", "Bacteria", "43.5", "0.00947", "", "NR", "WP_140189372.1", "2371", "g121698", "i0", "50", "0.923076923076923", "42", "20", "46.2", "1", "129", "4", "68", "108", "WP_140189372.1 hypothetical protein, partial [Xylella fastidiosa]", "diamond", "252", "43.5", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Lysobacterales", "Lysobacteraceae", "Xylella", "Xylella fastidiosa"], [31647507, "PRJNA1074407_P_NODE_142537_length_243_cov_0.894118_g138699_i0", "PRJNA1074407", "142537", "243", "0.894118", "2.17270674", "Mesorhizobium sp. DCY119", "2108445", "Bacteria", "Bacteria", "43.5", "0.0193", "", "NR", "WP_119921772.1", "2108445", "g138699", "i0", "80", "0.617283950617284", "25", "5", "30.9", "0", "75", "1", "1", "25", "WP_119921772.1 hypothetical protein [Mesorhizobium sp. DCY119]", "diamond", "150", "43.5", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Alphaproteobacteria", "Hyphomicrobiales", "Phyllobacteriaceae", "Mesorhizobium", "Mesorhizobium sp. DCY119"], [32027306, "PRJNA1074407_P_NODE_122398_length_281_cov_1.264423_g118560_i0", "PRJNA1074407", "122398", "281", "1.264423", "3.55302863", "Escherichia coli", "562", "Bacteria", "Bacteria", "42", "0.0135", "", "NR", "MFK9312080.1", "562", "g118560", "i0", "46.3", "0.576512455516014", "54", "27", "55.5", "1", "184", "29", "14", "67", "MFK9312080.1 hypothetical protein [Escherichia coli]", "diamond", "162", "42", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Enterobacterales", "Enterobacteriaceae", "Escherichia", "Escherichia coli"], [32470493, "PRJNA1074407_P_NODE_97739_length_356_cov_1.530035_g93901_i0", "PRJNA1074407", "97739", "356", "1.530035", "5.4469246", "Cupriavidus metallidurans", "119219", "Bacteria", "Bacteria", "234", "4.23e-77", "", "NR", "WP_035835132.1", "119219", "g93901", "i0", "100", "0.960674157303371", "114", "0", "96.1", "0", "2", "343", "41", "154", "WP_035835132.1 HNH endonuclease [Cupriavidus metallidurans]", "diamond", "342", "234", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Betaproteobacteria", "Burkholderiales", "Burkholderiaceae", "Cupriavidus", "Cupriavidus metallidurans"], [32682460, "PRJNA1074407_P_NODE_128180_length_266_cov_1.088083_g124342_i0", "PRJNA1074407", "128180", "266", "1.088083", "2.89430078", "root", "1", "Root_unresolved", "Root_unresolved", "45.4", "0.00531", "", "NR", "WP_267339125.1", "670", "g124342", "i0", "95", "0.902255639097744", "20", "1", "22.6", "0", "100", "41", "59", "78", "WP_267339125.1 RNA-directed DNA polymerase, partial [Vibrio parahaemolyticus]", "diamond", "240", "45.4", "1", "Bacteria", null, "Pseudomonadati", "Pseudomonadota", "Gammaproteobacteria", "Vibrionales", "Vibrionaceae", "Vibrio", "Vibrio parahaemolyticus"]], "truncated": false, "filtered_table_rows_count": 14, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "diamond", "p1": "PRJNA1074407", "p2": "Pseudomonadota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1074407&tax_phylum=Pseudomonadota", "results": [{"value": "PRJNA1074407", "label": "PRJNA1074407", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&tax_phylum=Pseudomonadota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1074407&tax_phylum=Pseudomonadota", "results": [{"value": "diamond", "label": "diamond", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1074407&tax_phylum=Pseudomonadota", "selected": true}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1074407&tax_phylum=Pseudomonadota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1074407&tax_phylum=Pseudomonadota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1074407&tax_phylum=Pseudomonadota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1074407&tax_phylum=Pseudomonadota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1074407&tax_phylum=Pseudomonadota&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1074407&tax_phylum=Pseudomonadota", "results": [{"value": "Pseudomonadota", "label": "Pseudomonadota", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJNA1074407", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 266.01683800981846}