{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"diamond\", bioproject = \"PRJEB75230\" and tax_kingdom = \"Pararnavirae\"", "rows": [[9063449, "PRJEB75230_P_NODE_134188_length_249_cov_0.875000_g134006_i0", "PRJEB75230", "134188", "249", "0.875", "2.17875", "Betaretrovirus", "140052", "Viruses", "Viruses", "109", "1.5e-25", "", "NR", "P51517.2", "39068", "g134006", "i0", "76.8", "6.69879518072289", "69", "16", "83.1", "0", "233", "27", "943", "1011", "P51517.2 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Simian retrovirus 2]", "diamond", "1668", "110", "0.990909090909091", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus maspfimon"], [9924193, "PRJEB75230_P_NODE_53108_length_308_cov_1.174468_g52926_i0", "PRJEB75230", "53108", "308", "1.174468", "3.61736144", "Betaretrovirus", "140052", "Viruses", "Viruses", "154", "5.61e-41", "", "NR", "P51517.2", "39068", "g52926", "i0", "72.5", "9.92532467532468", "102", "28", "99.4", "0", "1", "306", "630", "731", "P51517.2 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Simian retrovirus 2]", "diamond", "3057", "155", "0.993548387096774", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus maspfimon"], [11198989, "PRJEB75230_P_NODE_107829_length_258_cov_1.135135_g107647_i0", "PRJEB75230", "107829", "258", "1.135135", "2.9286483", "root", "1", "Root_unresolved", "Root_unresolved", "86.3", "2.14e-17", "", "NR", "pir|D40899|", "11751", "g107647", "i0", "51.9", "8.01162790697674", "77", "37", "89.5", "0", "232", "2", "246", "322", "pir|D40899| pol polyprotein - Chinese hamster intracisternal A-particle CHIAP34 [Chinese hamster Intracisternal A-particle CHIAP34]", "diamond", "2067", "86.3", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Intracisternal A-particles", "Chinese hamster Intracisternal A-particle CHIAP34"], [12890613, "PRJEB75230_P_NODE_31111_length_346_cov_1.520147_g30929_i0", "PRJEB75230", "31111", "346", "1.520147", "5.25970862", "Prosimian retrovirus 1", "2821277", "Viruses", "Viruses", "132", "6.889999999999998e-35", "", "NR", "QTI96651.1", "2821277", "g30929", "i0", "72.8", "1.40462427745665", "81", "22", "70.2", "0", "245", "3", "189", "269", "QTI96651.1 pro, partial [Prosimian retrovirus 1]", "diamond", "486", "132", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Prosimian retrovirus 1"], [15439471, "PRJEB75230_P_NODE_29593_length_350_cov_1.599278_g29411_i0", "PRJEB75230", "29593", "350", "1.599278", "5.597473", "Simian retrovirus 8", "1904439", "Viruses", "Viruses", "162", "1.6599999999999996e-43", "", "NR", "AOS48109.1", "1904439", "g29411", "i0", "69", "6", "100", "31", "85.7", "0", "301", "2", "755", "854", "AOS48109.1 pol protein, partial [Simian retrovirus 8]", "diamond", "2100", "162", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Simian retrovirus 8"], [19262540, "PRJEB75230_P_NODE_28136_length_355_cov_0.950355_g27954_i0", "PRJEB75230", "28136", "355", "0.950355", "3.37376025", "Betaretrovirus", "140052", "Viruses", "Viruses", "146", "3.21e-41", "", "NR", "NP_954564.1", "11855", "g27954", "i0", "71.8", "7.83380281690141", "103", "27", "85.4", "1", "355", "53", "98", "200", "NP_954564.1 DU [Mason-Pfizer monkey virus]", "diamond", "2781", "146", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus maspfimon"], [27974546, "PRJEB75230_P_NODE_103565_length_261_cov_1.218085_g103383_i0", "PRJEB75230", "103565", "261", "1.218085", "3.17920185", "root", "1", "Root_unresolved", "Root_unresolved", "125", "2.75e-31", "", "NR", "AAC97567.1", "1048243", "g103383", "i0", "72", "4.79310344827586", "82", "23", "94.3", "0", "10", "255", "312", "393", "AAC97567.1 polymerase, partial [Simian endogenous retrovirus]", "diamond", "1251", "125", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus maspfimon"], [28226869, "PRJEB75230_P_NODE_35126_length_337_cov_1.587121_g34944_i0", "PRJEB75230", "35126", "337", "1.587121", "5.34859777", "Betaretrovirus", "140052", "Viruses", "Viruses", "144", "3.34e-37", "", "NR", "ADC52788.1", "723802", "g34944", "i0", "62.9", "8.3946587537092", "105", "39", "93.5", "0", "9", "323", "386", "490", "ADC52788.1 pol protein, partial [Simian retrovirus 4]", "diamond", "2829", "144", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Simian retrovirus 4"], [29024129, "PRJEB75230_P_NODE_132808_length_249_cov_0.875000_g132626_i0", "PRJEB75230", "132808", "249", "0.875", "2.17875", "Mason-Pfizer monkey virus", "11855", "Viruses", "Viruses", "76.3", "6.4e-14", "", "NR", "NP_056891.1", "11855", "g132626", "i0", "56.4", "1.87951807228916", "55", "24", "66.3", "0", "80", "244", "1715", "1769", "NP_056891.1 RT-IN [Mason-Pfizer monkey virus]", "diamond", "468", "76.6", "0.996083550913838", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus maspfimon"], [29363958, "PRJEB75230_P_NODE_33209_length_341_cov_1.485075_g33027_i0", "PRJEB75230", "33209", "341", "1.485075", "5.06410575", "Betaretrovirus", "140052", "Viruses", "Viruses", "166", "4.28e-45", "", "NR", "NP_056891.1", "11855", "g33027", "i0", "67", "3.94134897360704", "112", "37", "98.5", "0", "341", "6", "1559", "1670", "NP_056891.1 RT-IN [Mason-Pfizer monkey virus]", "diamond", "1344", "166", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus maspfimon"], [30160376, "PRJEB75230_P_NODE_72872_length_286_cov_1.230047_g72690_i0", "PRJEB75230", "72872", "286", "1.230047", "3.51793442", "Simian endogenous retrovirus", "1048243", "Viruses", "Viruses", "54.3", "5.24e-6", "", "NR", "AAC97567.1", "1048243", "g72690", "i0", "47.8", "2.06643356643357", "67", "30", "70.3", "1", "6", "206", "441", "502", "AAC97567.1 polymerase, partial [Simian endogenous retrovirus]", "diamond", "591", "54.3", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus maspfimon"], [30406451, "PRJEB75230_P_NODE_71713_length_287_cov_1.317757_g71531_i0", "PRJEB75230", "71713", "287", "1.317757", "3.78196259", "Betaretrovirus", "140052", "Viruses", "Viruses", "129", "2.4599999999999995e-32", "", "NR", "NP_056891.1", "11855", "g71531", "i0", "66.7", "7.80836236933798", "93", "28", "97.2", "1", "8", "286", "1479", "1568", "NP_056891.1 RT-IN [Mason-Pfizer monkey virus]", "diamond", "2241", "129", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus maspfimon"], [30595504, "PRJEB75230_P_NODE_40633_length_327_cov_0.937008_g40451_i0", "PRJEB75230", "40633", "327", "0.937008", "3.06401616", "Betaretrovirus", "140052", "Viruses", "Viruses", "96.3", "1.7e-20", "", "NR", "BAA03767.1", "11757", "g40451", "i0", "49.5", "7", "109", "51", "100", "2", "327", "1", "420", "524", "BAA03767.1 gag pro pol polyprotein, partial [Mouse mammary tumor virus]", "diamond", "2289", "96.3", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus murmamtum"], [30919103, "PRJEB75230_P_NODE_183974_length_241_cov_0.916667_g183792_i0", "PRJEB75230", "183974", "241", "0.916667", "2.20916747", "Bovine retrovirus CH15", "1822365", "Viruses", "Viruses", "88.2", "3.7e-18", "", "NR", "YP_009243641.1", "1822365", "g183792", "i0", "55.4", "1.8298755186722", "74", "33", "92.1", "0", "241", "20", "22", "95", "YP_009243641.1 putative viral DNA polymerase [Bovine retrovirus CH15]", "diamond", "441", "88.2", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Bovine retrovirus CH15"], [31171390, "PRJEB75230_P_NODE_138355_length_248_cov_0.880000_g138173_i0", "PRJEB75230", "138355", "248", "0.88", "2.1824", "Retroviridae sp.", "2681591", "Viruses", "Viruses", "63.5", "1.86e-9", "", "NR", "XNT20491.1", "2681591", "g138173", "i0", "59.6", "0.689516129032258", "57", "20", "65.3", "1", "29", "190", "539", "595", "XNT20491.1 MAG: hypothetical protein, partial [Retroviridae sp.]", "diamond", "171", "63.5", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", null, "Retroviridae sp."], [31796757, "PRJEB75230_P_NODE_157457_length_245_cov_0.895349_g157275_i0", "PRJEB75230", "157457", "245", "0.895349", "2.19360505", "Alpharetrovirus", "153057", "Viruses", "Viruses", "103", "2.06e-23", "", "NR", "CAA45618.1", "11961", "g157275", "i0", "59.3", "9.91836734693878", "81", "33", "99.2", "0", "3", "245", "92", "172", "CAA45618.1 Reverse Transcriptase-and Integrase precursor [Lymphoproliferative disease virus]", "diamond", "2430", "104", "0.990384615384615", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Alpharetrovirus", "Lymphoproliferative disease virus"], [31994022, "PRJEB75230_P_NODE_173218_length_242_cov_0.934911_g173036_i0", "PRJEB75230", "173218", "242", "0.934911", "2.26248462", "Simian endogenous retrovirus", "1048243", "Viruses", "Viruses", "100", "1.74e-22", "", "NR", "AAC97567.1", "1048243", "g173036", "i0", "60.3", "3.6198347107438", "73", "29", "90.5", "0", "23", "241", "295", "367", "AAC97567.1 polymerase, partial [Simian endogenous retrovirus]", "diamond", "876", "100", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus maspfimon"], [32057287, "PRJEB75230_P_NODE_59518_length_300_cov_1.281938_g59336_i0", "PRJEB75230", "59518", "300", "1.281938", "3.845814", "Black Syrian hamster retrovirus", "2594425", "Viruses", "Viruses", "59.7", "8.44e-8", "", "NR", "QDK64674.1", "2594425", "g59336", "i0", "34.6", "2.91", "107", "47", "86", "3", "297", "40", "696", "800", "QDK64674.1 pro-pol, partial [Black Syrian hamster retrovirus]", "diamond", "873", "59.7", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Black Syrian hamster retrovirus"], [32120728, "PRJEB75230_P_NODE_138658_length_248_cov_0.880000_g138476_i0", "PRJEB75230", "138658", "248", "0.88", "2.1824", "Simian retrovirus 8", "1904439", "Viruses", "Viruses", "129", "1.4e-32", "", "NR", "AOS48109.1", "1904439", "g138476", "i0", "72", "4.95967741935484", "82", "21", "99.2", "1", "246", "1", "744", "823", "AOS48109.1 pol protein, partial [Simian retrovirus 8]", "diamond", "1230", "129", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Simian retrovirus 8"], [32145043, "PRJEB75230_P_NODE_9578_length_478_cov_1.412346_g9396_i0", "PRJEB75230", "9578", "478", "1.412346", "6.75101388", "Betaretrovirus", "140052", "Viruses", "Viruses", "225", "5.21e-66", "", "NR", "NP_041261.1", "11856", "g9396", "i0", "69", "4.88284518828452", "155", "48", "97.3", "0", "12", "476", "304", "458", "NP_041261.1 pol protein [Squirrel monkey retrovirus]", "diamond", "2334", "225", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus squmon"], [32279027, "PRJEB75230_P_NODE_73399_length_286_cov_0.882629_g73217_i0", "PRJEB75230", "73399", "286", "0.882629", "2.52431894", "Squirrel monkey retrovirus", "11856", "Viruses", "Viruses", "113", "8.17e-27", "", "NR", "NP_041261.1", "11856", "g73217", "i0", "55.8", "1.99300699300699", "95", "41", "99.7", "1", "1", "285", "475", "568", "NP_041261.1 pol protein [Squirrel monkey retrovirus]", "diamond", "570", "113", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus squmon"], [32405451, "PRJEB75230_P_NODE_180859_length_241_cov_0.916667_g180677_i0", "PRJEB75230", "180859", "241", "0.916667", "2.20916747", "Mason-Pfizer monkey virus", "11855", "Viruses", "Viruses", "123", "1.82e-30", "", "NR", "NP_056891.1", "11855", "g180677", "i0", "69.6", "1.96680497925311", "79", "24", "98.3", "0", "3", "239", "1266", "1344", "NP_056891.1 RT-IN [Mason-Pfizer monkey virus]", "diamond", "474", "123", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus maspfimon"]], "truncated": false, "filtered_table_rows_count": 22, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_kingdom\" = :p2 order by rowid limit 101", "params": {"p0": "diamond", "p1": "PRJEB75230", "p2": "Pararnavirae"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJEB75230&tax_kingdom=Pararnavirae", "results": [{"value": "PRJEB75230", "label": "PRJEB75230", "count": 22, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&tax_kingdom=Pararnavirae", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJEB75230&tax_kingdom=Pararnavirae", "results": [{"value": "diamond", "label": "diamond", "count": 22, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJEB75230&tax_kingdom=Pararnavirae", "selected": true}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJEB75230&tax_kingdom=Pararnavirae", "results": [{"value": "Viruses", "label": "Viruses", "count": 22, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJEB75230&tax_kingdom=Pararnavirae&tax_superkingdom=Viruses", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJEB75230&tax_kingdom=Pararnavirae", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJEB75230&tax_kingdom=Pararnavirae", "results": [{"value": "Pararnavirae", "label": "Pararnavirae", "count": 22, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJEB75230", "selected": true}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJEB75230&tax_kingdom=Pararnavirae", "results": [{"value": "Artverviricota", "label": "Artverviricota", "count": 22, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=diamond&bioproject=PRJEB75230&tax_kingdom=Pararnavirae&tax_phylum=Artverviricota", "selected": false}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 459.45544300047914}