{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"blastn\", bioproject = \"PRJNA879067\" and tax_phylum = \"Spirochaetota\"", "rows": [[855722, "PRJNA879067_P_NODE_62741_length_431_cov_2.966480_g59256_i0", "PRJNA879067", "62741", "431", "2.96648", "12.7855288", "Leptospira cinconiae", "3235173", "Bacteria", "Bacteria", "732", "0", "", "NTclustered", "gi|2777192084|gb|CP162137.1|", "3235173", "g59256", "i0", "99.502", "178.983758700696", "402", "2", "93", "0", "30", "431", "753237", "753638", "Leptospira cinconiae strain WS58.C1 chromosome 1, complete sequence", "blastn", "77142", "732", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Leptospirales", "Leptospiraceae", "Leptospira", "Leptospira cinconiae"], [2131723, "PRJNA879067_P_NODE_90402_length_297_cov_1.375000_g86916_i0", "PRJNA879067", "90402", "297", "1.375", "4.08375", "Brachyspira murdochii", "84378", "Bacteria", "Bacteria", "499", "8.2e-137", "", "NTclustered", "gi|296016874|gb|CP001959.1|", "526224", "g86916", "i0", "99.634", "1.01683501683502", "273", "1", "92", "0", "25", "297", "514628", "514900", "Brachyspira murdochii DSM 12563, complete genome", "blastn", "302", "499", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Brachyspirales", "Brachyspiraceae", "Brachyspira", "Brachyspira murdochii"], [3404664, "PRJNA879067_P_NODE_108583_length_244_cov_0.900585_g105097_i0", "PRJNA879067", "108583", "244", "0.900585", "2.1974274", "Brachyspira murdochii", "84378", "Bacteria", "Bacteria", "60.2", "1.32e-4", "", "NTclustered", "gi|296016874|gb|CP001959.1|", "526224", "g105097", "i0", "94.737", "0.418032786885246", "38", "2", "16", "0", "201", "238", "3184156", "3184119", "Brachyspira murdochii DSM 12563, complete genome", "blastn", "102", "60.2", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Brachyspirales", "Brachyspiraceae", "Brachyspira", "Brachyspira murdochii"], [3790788, "PRJNA879067_P_NODE_21723_length_955_cov_21.062358_g18715_i0", "PRJNA879067", "21723", "955", "21.062358", "201.1455189", "root", "1", "Root_unresolved", "Root_unresolved", "54.7", "0.027", "", "NTclustered", "gi|2537508579|gb|CP124112.1|", "64897", "g18715", "i0", "100", "0.0910994764397906", "29", "0", "3", "0", "829", "857", "99", "127", "Borreliella bissettiae strain Pgeb plasmid lp54, complete sequence", "blastn", "87", "54.7", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Borreliaceae", "Borreliella", "Borreliella bissettiae"], [4684270, "PRJNA879067_P_NODE_71604_length_379_cov_7.196078_g68119_i0", "PRJNA879067", "71604", "379", "7.196078", "27.27313562", "Treponema peruense", "2787628", "Bacteria", "Bacteria", "640", "6.059999999999999e-179", "", "NTclustered", "gi|1946838279|gb|CP064936.1|", "2787628", "g68119", "i0", "99.157", "142.390501319261", "356", "1", "94", "2", "1", "355", "1009822", "1009468", "Treponema peruense strain RCC2812 chromosome, complete genome", "blastn", "53966", "640", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema peruense"], [5958791, "PRJNA879067_P_NODE_58845_length_457_cov_4.216146_g55360_i0", "PRJNA879067", "58845", "457", "4.216146", "19.26778722", "Leptospira cinconiae", "3235173", "Bacteria", "Bacteria", "486", "1.0299999999999999e-132", "", "NTclustered", "gi|2777192084|gb|CP162137.1|", "3235173", "g55360", "i0", "87.215", "0.958424507658643", "438", "43", "93", "6", "31", "457", "3490218", "3489783", "Leptospira cinconiae strain WS58.C1 chromosome 1, complete sequence", "blastn", "438", "486", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Leptospirales", "Leptospiraceae", "Leptospira", "Leptospira cinconiae"], [8509372, "PRJNA879067_P_NODE_93887_length_284_cov_1.497630_g90401_i0", "PRJNA879067", "93887", "284", "1.49763", "4.2532692", "Leptospira cinconiae", "3235173", "Bacteria", "Bacteria", "342", "1.3899999999999999e-89", "", "NTclustered", "gi|2777192084|gb|CP162137.1|", "3235173", "g90401", "i0", "90.945", "0.894366197183099", "254", "23", "89", "0", "3", "256", "39076", "38823", "Leptospira cinconiae strain WS58.C1 chromosome 1, complete sequence", "blastn", "254", "342", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Leptospirales", "Leptospiraceae", "Leptospira", "Leptospira cinconiae"], [8509434, "PRJNA879067_P_NODE_95927_length_277_cov_1.465686_g92441_i0", "PRJNA879067", "95927", "277", "1.465686", "4.05995022", "Leptospira cinconiae", "3235173", "Bacteria", "Bacteria", "291", "4.96e-74", "", "NTclustered", "gi|2777192084|gb|CP162137.1|", "3235173", "g92441", "i0", "85.56", "1", "277", "40", "100", "0", "1", "277", "3365652", "3365376", "Leptospira cinconiae strain WS58.C1 chromosome 1, complete sequence", "blastn", "277", "291", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Leptospirales", "Leptospiraceae", "Leptospira", "Leptospira cinconiae"], [8892179, "PRJNA879067_P_NODE_80607_length_336_cov_2.973384_g77121_i0", "PRJNA879067", "80607", "336", "2.973384", "9.99057024", "Treponema", "157", "Bacteria", "Bacteria", "337", "7.81e-88", "", "NTclustered", "gi|470488561|ref|NR_076878.1|", "81028", "g77121", "i0", "87.586", "96.5119047619048", "290", "36", "86", "0", "14", "303", "290", "1", "Treponema brennaborense strain DD5/3 23S ribosomal RNA gene, complete sequence", "blastn", "32428", "340", "0.991176470588235", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema brennaborense"], [11059302, "PRJNA879067_P_NODE_6229_length_2016_cov_29.138446_g4624_i0", "PRJNA879067", "6229", "2016", "29.138446", "587.43107136", "Treponema denticola", "158", "Bacteria", "Bacteria", "3607", "0", "", "NTclustered", "gi|2277007739|gb|CP038800.1|", "158", "g4624", "i0", "99.008", "28.6666666666667", "2016", "15", "100", "4", "1", "2016", "2050029", "2052039", "Treponema denticola strain ATCC 700768 chromosome, complete genome", "blastn", "57792", "3607", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema denticola"], [12333386, "PRJNA879067_P_NODE_20590_length_990_cov_45.406761_g17638_i0", "PRJNA879067", "20590", "990", "45.406761", "449.5269339", "Leptospira cinconiae", "3235173", "Bacteria", "Bacteria", "963", "0", "", "NTclustered", "gi|2777192084|gb|CP162137.1|", "3235173", "g17638", "i0", "84.861", "0.980808080808081", "971", "129", "97", "17", "26", "987", "3255592", "3256553", "Leptospira cinconiae strain WS58.C1 chromosome 1, complete sequence", "blastn", "971", "963", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Leptospirales", "Leptospiraceae", "Leptospira", "Leptospira cinconiae"], [12334334, "PRJNA879067_P_NODE_48150_length_540_cov_33.520343_g44672_i0", "PRJNA879067", "48150", "540", "33.520343", "181.0098522", "Borreliella garinii", "29519", "Bacteria", "Bacteria", "56.5", "0.004", "", "NTclustered", "gi|2646141648|gb|CP117840.1|", "29519", "g44672", "i0", "100", "0.0555555555555556", "30", "0", "6", "0", "319", "348", "3935", "3964", "Borreliella garinii strain 17-63N1 plasmid p_cp26, complete sequence", "blastn", "30", "56.5", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Borreliaceae", "Borreliella", "Borreliella garinii"], [12718812, "PRJNA879067_P_NODE_76110_length_356_cov_4.162544_g72624_i0", "PRJNA879067", "76110", "356", "4.162544", "14.81865664", "Pseudomonadati", "3379134", "Bacteria", "Bacteria", "60.2", "2.01e-4", "", "NTclustered", "gi|2612877174|gb|CP136243.1|", "173", "g72624", "i0", "100", "40.4494382022472", "32", "0", "9", "0", "325", "356", "2183964", "2183995", "Leptospira interrogans strain CUDO5 chromosome I, complete sequence", "blastn", "14400", "60.2", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Leptospirales", "Leptospiraceae", "Leptospira", "Leptospira interrogans"], [12718918, "PRJNA879067_P_NODE_90110_length_298_cov_1.711111_g86624_i0", "PRJNA879067", "90110", "298", "1.711111", "5.09911078", "root", "1", "Root_unresolved", "Root_unresolved", "52.8", "0.028", "", "NTclustered", "gi|225213769|gb|CP001357.1|", "565034", "g86624", "i0", "100", "0.187919463087248", "28", "0", "9", "0", "198", "225", "2151293", "2151320", "Brachyspira hyodysenteriae WA1, complete genome", "blastn", "56", "52.8", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Brachyspirales", "Brachyspiraceae", "Brachyspira", "Brachyspira hyodysenteriae"], [19982627, "PRJNA879067_P_NODE_73596_length_369_cov_2.050676_g70111_i0", "PRJNA879067", "73596", "369", "2.050676", "7.56699444", "Treponema peruense", "2787628", "Bacteria", "Bacteria", "244", "5.389999999999999e-60", "", "NTclustered", "gi|1946838279|gb|CP064936.1|", "2787628", "g70111", "i0", "80.757", "1.21138211382114", "317", "57", "85", "4", "28", "342", "1354837", "1355151", "Treponema peruense strain RCC2812 chromosome, complete genome", "blastn", "447", "244", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema peruense"], [22531432, "PRJNA879067_P_NODE_31058_length_746_cov_6.332838_g27727_i0", "PRJNA879067", "31058", "746", "6.332838", "47.24297148", "Leptospira cinconiae", "3235173", "Bacteria", "Bacteria", "1168", "0", "", "NTclustered", "gi|2777192084|gb|CP162137.1|", "3235173", "g27727", "i0", "95.027", "72.3793565683646", "744", "36", "99", "1", "1", "744", "2680210", "2680952", "Leptospira cinconiae strain WS58.C1 chromosome 1, complete sequence", "blastn", "53995", "1168", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Leptospirales", "Leptospiraceae", "Leptospira", "Leptospira cinconiae"], [22916864, "PRJNA879067_P_NODE_71598_length_379_cov_9.258170_g68113_i0", "PRJNA879067", "71598", "379", "9.25817", "35.0884643", "Treponema", "157", "Bacteria", "Bacteria", "643", "4.679999999999999e-180", "", "NTclustered", "gi|2189493055|gb|CP091738.1|", "167", "g68113", "i0", "100", "58.3324538258575", "348", "0", "92", "0", "1", "348", "286643", "286296", "MAG: Treponema succinifaciens isolate nC27_bin.114.fa chromosome", "blastn", "22108", "643", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema succinifaciens"], [22916883, "PRJNA879067_P_NODE_74018_length_367_cov_1.571429_g70533_i0", "PRJNA879067", "74018", "367", "1.571429", "5.76714443", "Sphaerochaeta", "399320", "Bacteria", "Bacteria", "326", "1.86e-84", "", "NTclustered", "gi|324025087|gb|CP002541.1|", "158189", "g70533", "i0", "85.761", "106.359673024523", "309", "42", "84", "2", "37", "344", "1241515", "1241822", "Sphaerochaeta globosa str. Buddy, complete genome", "blastn", "39034", "326", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Sphaerochaetaceae", "Sphaerochaeta", "Sphaerochaeta globosa"], [25082286, "PRJNA879067_P_NODE_84680_length_319_cov_2.890244_g81194_i0", "PRJNA879067", "84680", "319", "2.890244", "9.21987836", "Treponema succinifaciens", "167", "Bacteria", "Bacteria", "545", "1.13e-150", "", "NTclustered", "gi|328447254|gb|CP002631.1|", "869209", "g81194", "i0", "100", "1.85266457680251", "295", "0", "92", "0", "1", "295", "1050075", "1049781", "Treponema succinifaciens DSM 2489, complete genome", "blastn", "591", "545", "1", "Bacteria", null, "Pseudomonadati", "Spirochaetota", "Spirochaetia", "Spirochaetales", "Treponemataceae", "Treponema", "Treponema succinifaciens"]], "truncated": false, "filtered_table_rows_count": 19, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "blastn", "p1": "PRJNA879067", "p2": "Spirochaetota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA879067&tax_phylum=Spirochaetota", "results": [{"value": "PRJNA879067", "label": "PRJNA879067", "count": 19, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&tax_phylum=Spirochaetota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA879067&tax_phylum=Spirochaetota", "results": [{"value": "blastn", "label": "blastn", "count": 19, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA879067&tax_phylum=Spirochaetota", "selected": true}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA879067&tax_phylum=Spirochaetota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 19, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA879067&tax_phylum=Spirochaetota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA879067&tax_phylum=Spirochaetota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA879067&tax_phylum=Spirochaetota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 19, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA879067&tax_phylum=Spirochaetota&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA879067&tax_phylum=Spirochaetota", "results": [{"value": "Spirochaetota", "label": "Spirochaetota", "count": 19, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA879067", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 285.94143800000893}