{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"blastn\", bioproject = \"PRJNA849822\" and tax_kingdom = \"Orthornavirae\"", "rows": [[3389227, "PRJNA849822_P_NODE_14903_length_377_cov_1.282895_g14729_i0", "PRJNA849822", "14903", "377", "1.282895", "4.83651415", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "697", "0", "", "NTclustered", "gi|2560551729|gb|OR418642.1|", "2697049", "g14729", "i0", "100", "100", "377", "0", "100", "0", "1", "377", "6182", "6558", "Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CA-LACPHL-AY00896/2022 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds", "blastn", "37700", "697", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [4666936, "PRJNA849822_P_NODE_10604_length_457_cov_1.510417_g10431_i0", "PRJNA849822", "10604", "457", "1.510417", "6.90260569", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "845", "0", "", "NTclustered", "gi|2499447400|emb|OX492971.1|", "2697049", "g10431", "i0", "100", "100", "457", "0", "100", "0", "1", "457", "18123", "18579", "Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite", "blastn", "45700", "845", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [7216723, "PRJNA849822_P_NODE_24826_length_291_cov_1.362385_g24652_i0", "PRJNA849822", "24826", "291", "1.362385", "3.96454035", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "538", "1.6999999999999994e-148", "", "NTclustered", "gi|2105696498|gb|OK358740.1|", "2697049", "g24652", "i0", "100", "100", "291", "0", "100", "0", "1", "291", "9591", "9881", "Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/TX-DSHS-9158/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), and ORF6 protein (ORF6) genes, complete cds; ORF7a protein (ORF7a) and ORF7b (ORF7b) genes, partial cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes, complete cds", "blastn", "29100", "538", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [7216741, "PRJNA849822_P_NODE_26_length_4288_cov_2.997628_g24_i0", "PRJNA849822", "26", "4288", "2.997628", "128.53828864", "Potexvirus trifolii", "3433859", "Viruses", "Viruses", "5304", "0", "", "NTclustered", "gi|2273760991|gb|OL472250.1|", "12188", "g24", "i0", "88.995", "22.9221082089552", "4289", "470", "100", "2", "1", "4288", "3", "4290", "MAG: White clover mosaic virus isolate TUR20SW polyprotein, 25 kDa triple gene block protein 1, 12 kDa triple gene block protein 2, and 7 kDa triple gene block protein 3 genes, complete cds; and coat protein gene, partial cds", "blastn", "98290", "5304", "1", "Viruses", null, "Orthornavirae", "Kitrinoviricota", "Alsuviricetes", "Tymovirales", "Alphaflexiviridae", "Potexvirus", "Potexvirus trifolii"], [7216770, "PRJNA849822_P_NODE_31446_length_261_cov_1.015957_g31272_i0", "PRJNA849822", "31446", "261", "1.015957", "2.65164777", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "483", "7.12e-132", "", "NTclustered", "gi|2316342856|gb|OP624554.1|", "2697049", "g31272", "i0", "100", "100", "261", "0", "100", "0", "1", "261", "24393", "24133", "Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/OH-CDC-QDX41755282/2022, complete genome", "blastn", "26100", "483", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [9766700, "PRJNA849822_P_NODE_29428_length_269_cov_1.591837_g29254_i0", "PRJNA849822", "29428", "269", "1.591837", "4.28204153", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "497", "2.63e-136", "", "NTclustered", "gi|2316342856|gb|OP624554.1|", "2697049", "g29254", "i0", "100", "100", "269", "0", "100", "0", "1", "269", "13003", "12735", "Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/OH-CDC-QDX41755282/2022, complete genome", "blastn", "26900", "497", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [11042194, "PRJNA849822_P_NODE_17869_length_343_cov_0.811111_g17695_i0", "PRJNA849822", "17869", "343", "0.811111", "2.78211073", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "634", "2.5299999999999996e-177", "", "NTclustered", "gi|2316342856|gb|OP624554.1|", "2697049", "g17695", "i0", "100", "100", "343", "0", "100", "0", "1", "343", "22201", "21859", "Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/OH-CDC-QDX41755282/2022, complete genome", "blastn", "34300", "634", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [11042214, "PRJNA849822_P_NODE_19709_length_326_cov_1.296443_g19535_i0", "PRJNA849822", "19709", "326", "1.296443", "4.22640418", "Phlebovirus sp.", "206378", "Viruses", "Viruses", "54.7", "0.009", "", "NTclustered", "gi|1997312915|gb|MW370443.1|", "206378", "g19535", "i0", "92.105", "0.116564417177914", "38", "3", "12", "0", "34", "71", "2324", "2361", "Phlebovirus sp. isolate SXWX1916-4 segment M membrane glycoprotein gene, complete cds", "blastn", "38", "54.7", "1", "Viruses", null, "Orthornavirae", "Negarnaviricota", "Bunyaviricetes", "Hareavirales", "Phenuiviridae", "Phlebovirus", "Phlebovirus sp."], [14866617, "PRJNA849822_P_NODE_28272_length_274_cov_3.104478_g28098_i0", "PRJNA849822", "28272", "274", "3.104478", "8.50626972", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "507", "4.47e-139", "", "NTclustered", "gi|2028980905|gb|MZ002360.1|", "2697049", "g28098", "i0", "100", "100", "274", "0", "100", "0", "1", "274", "3609", "3336", "Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome", "blastn", "27400", "507", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [18689946, "PRJNA849822_P_NODE_27855_length_276_cov_2.044335_g27681_i0", "PRJNA849822", "27855", "276", "2.044335", "5.6423646", "Potexvirus trifolii", "3433859", "Viruses", "Viruses", "427", "3.61e-115", "", "NTclustered", "gi|1078555000|dbj|LC190455.1|", "12188", "g27681", "i0", "94.565", "35.231884057971", "276", "15", "100", "0", "1", "276", "155", "430", "White clover mosaic virus CP gene for coat protein, complete cds, isolate: Namwon", "blastn", "9724", "427", "1", "Viruses", null, "Orthornavirae", "Kitrinoviricota", "Alsuviricetes", "Tymovirales", "Alphaflexiviridae", "Potexvirus", "Potexvirus trifolii"], [18689962, "PRJNA849822_P_NODE_30775_length_263_cov_4.800000_g30601_i0", "PRJNA849822", "30775", "263", "4.8", "12.624", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "486", "5.5499999999999986e-133", "", "NTclustered", "gi|2499447400|emb|OX492971.1|", "2697049", "g30601", "i0", "100", "100", "263", "0", "100", "0", "1", "263", "7405", "7143", "Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite", "blastn", "26300", "486", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [19085066, "PRJNA849822_P_NODE_41375_length_244_cov_0.912281_g41201_i0", "PRJNA849822", "41375", "244", "0.912281", "2.22596564", "Potyvirus", "12195", "Viruses", "Viruses", "401", "1.8999999999999998e-107", "", "NTclustered", "gi|1735126414|gb|MK292120.1|", "12198", "g41201", "i0", "96.311", "22.4754098360656", "244", "9", "100", "0", "1", "244", "644", "887", "Clover yellow vein virus isolate IA-2016, complete genome", "blastn", "5484", "401", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Stelpaviricetes", "Patatavirales", "Potyviridae", "Potyvirus", "Potyvirus trifolii"], [19964979, "PRJNA849822_P_NODE_17456_length_347_cov_1.492701_g17282_i0", "PRJNA849822", "17456", "347", "1.492701", "5.17967247", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "641", "1.5299999999999996e-179", "", "NTclustered", "gi|2316342856|gb|OP624554.1|", "2697049", "g17282", "i0", "100", "100", "347", "0", "100", "0", "1", "347", "23899", "23553", "Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/OH-CDC-QDX41755282/2022, complete genome", "blastn", "34700", "641", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [19965086, "PRJNA849822_P_NODE_30676_length_264_cov_1.345550_g30502_i0", "PRJNA849822", "30676", "264", "1.34555", "3.552252", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "483", "7.219999999999998e-132", "", "NTclustered", "gi|2316342856|gb|OP624554.1|", "2697049", "g30502", "i0", "99.621", "100", "264", "1", "100", "0", "1", "264", "20196", "19933", "Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/OH-CDC-QDX41755282/2022, complete genome", "blastn", "26400", "483", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [19965089, "PRJNA849822_P_NODE_31056_length_262_cov_1.603175_g30882_i0", "PRJNA849822", "31056", "262", "1.603175", "4.2003185", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "484", "1.99e-132", "", "NTclustered", "gi|2499447400|emb|OX492971.1|", "2697049", "g30882", "i0", "100", "100", "262", "0", "100", "0", "1", "262", "25691", "25952", "Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite", "blastn", "26200", "484", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [21240696, "PRJNA849822_P_NODE_31177_length_262_cov_1.121693_g31003_i0", "PRJNA849822", "31177", "262", "1.121693", "2.93883566", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "479", "9.249999999999999e-131", "", "NTclustered", "gi|2529113455|emb|OY166144.1|", "2697049", "g31003", "i0", "99.618", "99.9923664122137", "262", "1", "100", "0", "1", "262", "17793", "18054", "Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1", "blastn", "26198", "479", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [22911143, "PRJNA849822_P_NODE_36038_length_250_cov_0.881356_g35864_i0", "PRJNA849822", "36038", "250", "0.881356", "2.20339", "Cucumovirus", "12304", "Viruses", "Viruses", "359", "1.19e-94", "", "NTclustered", "gi|124294729|gb|EF202595.1|", "12305", "g35864", "i0", "92.742", "99.2", "248", "18", "99", "0", "3", "250", "354", "107", "Cucumber mosaic virus isolate Tsh segment RNA1, complete sequence", "blastn", "24800", "359", "1", "Viruses", null, "Orthornavirae", "Kitrinoviricota", "Alsuviricetes", "Martellivirales", "Bromoviridae", "Cucumovirus", "Cucumovirus CMV"], [23790719, "PRJNA849822_P_NODE_10219_length_467_cov_2.274112_g10046_i0", "PRJNA849822", "10219", "467", "2.274112", "10.62010304", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "863", "0", "", "NTclustered", "gi|2316342856|gb|OP624554.1|", "2697049", "g10046", "i0", "100", "100", "467", "0", "100", "0", "1", "467", "23448", "22982", "Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/OH-CDC-QDX41755282/2022, complete genome", "blastn", "46700", "863", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [23790827, "PRJNA849822_P_NODE_22379_length_306_cov_2.004292_g22205_i0", "PRJNA849822", "22379", "306", "2.004292", "6.13313352", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "566", "8.239999999999998e-157", "", "NTclustered", "gi|2028980905|gb|MZ002360.1|", "2697049", "g22205", "i0", "100", "100", "306", "0", "100", "0", "1", "306", "8847", "8542", "Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome", "blastn", "30600", "566", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [23790889, "PRJNA849822_P_NODE_29899_length_267_cov_1.608247_g29725_i0", "PRJNA849822", "29899", "267", "1.608247", "4.29401949", "Betacoronavirus pandemicum", "3418604", "Viruses", "Viruses", "494", "3.38e-135", "", "NTclustered", "gi|2499447400|emb|OX492971.1|", "2697049", "g29725", "i0", "100", "100", "267", "0", "100", "0", "1", "267", "1897", "2163", "Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite", "blastn", "26700", "494", "1", "Viruses", null, "Orthornavirae", "Pisuviricota", "Pisoniviricetes", "Nidovirales", "Coronaviridae", "Betacoronavirus", "Betacoronavirus pandemicum"], [25064761, "PRJNA849822_P_NODE_2380_length_1067_cov_2.573441_g2254_i0", "PRJNA849822", "2380", "1067", "2.573441", "27.45861547", "Potexvirus trifolii", "3433859", "Viruses", "Viruses", "1352", "0", "", "NTclustered", "gi|1843793423|gb|MN399742.1|", "12188", "g2254", "i0", "89.493", "24.0552952202437", "1066", "108", "99", "4", "1", "1064", "4225", "5288", "White clover mosaic virus isolate Kreis Stormarn_18 RNA replication protein, triple gene block protein 1, triple gene block protein 2, triple gene block protein 3, and coat protein genes, complete cds", "blastn", "25667", "1352", "1", "Viruses", null, "Orthornavirae", "Kitrinoviricota", "Alsuviricetes", "Tymovirales", "Alphaflexiviridae", "Potexvirus", "Potexvirus trifolii"]], "truncated": false, "filtered_table_rows_count": 21, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_kingdom\" = :p2 order by rowid limit 101", "params": {"p0": "blastn", "p1": "PRJNA849822", "p2": "Orthornavirae"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA849822&tax_kingdom=Orthornavirae", "results": [{"value": "PRJNA849822", "label": "PRJNA849822", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&tax_kingdom=Orthornavirae", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA849822&tax_kingdom=Orthornavirae", "results": [{"value": "blastn", "label": "blastn", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA849822&tax_kingdom=Orthornavirae", "selected": true}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA849822&tax_kingdom=Orthornavirae", "results": [{"value": "Viruses", "label": "Viruses", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA849822&tax_kingdom=Orthornavirae&tax_superkingdom=Viruses", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA849822&tax_kingdom=Orthornavirae", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA849822&tax_kingdom=Orthornavirae", "results": [{"value": "Orthornavirae", "label": "Orthornavirae", "count": 21, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA849822", "selected": true}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA849822&tax_kingdom=Orthornavirae", "results": [{"value": "Pisuviricota", "label": "Pisuviricota", "count": 16, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA849822&tax_kingdom=Orthornavirae&tax_phylum=Pisuviricota", "selected": false}, {"value": "Kitrinoviricota", "label": "Kitrinoviricota", "count": 4, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA849822&tax_kingdom=Orthornavirae&tax_phylum=Kitrinoviricota", "selected": false}, {"value": "Negarnaviricota", "label": "Negarnaviricota", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA849822&tax_kingdom=Orthornavirae&tax_phylum=Negarnaviricota", "selected": false}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 207.9880849996698}