{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"blastn\", bioproject = \"PRJNA734348\" and tax_clade = \"core chlorophytes\"", "rows": [[1197389, "PRJNA734348_P_NODE_66361_length_273_cov_1.925000_g65664_i0", "PRJNA734348", "66361", "273", "1.925", "5.25525", "Prototheca", "3110", "Plants", "Plants", "505", "1.6e-138", "", "NTclustered", "gi|1562121201|gb|MK445207.1|", "3111", "g65664", "i0", "100", "95.2600732600733", "273", "0", "100", "0", "1", "273", "313", "41", "Prototheca wickerhamii strain UTEX 1437 from USA small subunit ribosomal RNA gene, partial sequence", "blastn", "26006", "505", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Trebouxiophyceae", "Chlorellales", "Chlorellaceae", "Prototheca", "Prototheca wickerhamii"], [1994922, "PRJNA734348_P_NODE_77102_length_263_cov_1.621053_g76404_i0", "PRJNA734348", "77102", "263", "1.621053", "4.26336939", "Protosiphon botryoides", "44656", "Plants", "Plants", "414", "2.66e-111", "", "NTclustered", "gi|1509778905|gb|MG778499.1|", "44656", "g76404", "i0", "95.437", "131.296577946768", "263", "6", "100", "5", "1", "263", "35169", "34913", "Protosiphon botryoides ribosomal protein S2 (rps2) gene, complete cds; tRNA-Asp (trnD(guc)) gene, complete sequence; 10 kDa phosphoprotein of photosystem II (psbH), photosystem II protein N (psbN), photosystem II protein T (psbT), and PSII 47 kDa protein (psbB) genes, complete cds; tRNA-Tyr (trnY(gua)) gene, complete sequence; ribosomal protein S11 (rps11), P700 apoprotein A2 of photosystem I (psaB), and RNA polymerase alpha subunit (rpoA) genes, complete cds; tRNA-Met (trnM(cau)) and tRNA-Lys (trnK(uuu)) genes, complete sequence; hypothetical chloroplast RF12 (ycf12) gene, complete cds; tRNA-Ser (trnS(gcu)) gene, complete sequence; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, complete cds; tRNA-Leu (trnL(uaa)) gene, complete sequence; hypothetical chloroplast RF3 (ycf3), hypothetical chloroplast protein RF4 (ycf4), ribosomal protein S9 (rps9), photosystem II protein V (psbE), ATP synthase CF0 B subunit (atpF), ATP synthase CF0 C subunit (atpH), ATP synthase CF1 epsilon subunit (atpE), ribosomal protein S7 (rps7), ribosomal protein S14 (rps14), M protein of photosystem II (psbM), photosystem II reaction center Z protein (psbZ), and heme attachment to plastid cytochrome c (ccsA) genes, complete cds; 5S ribosomal RNA (rrf), large subunit ribosomal RNA (rrl), tRNA-Ala (trnA(ugc)), tRNA-Ile (trnI(gau)), and small subunit ribosomal RNA (rrs) genes, complete sequence; protochlorophyllide reductase subunit B (chlB) gene, complete cds; tRNA-Arg (trnR(ucu)) gene, complete sequence; cytochrome b6/f complex subunit 4 (petD), apocytochrome f of cytochrome b6/f complex (petA), and RNA polymerase beta' subunit (rpoC1) genes, complete cds; tRNA-Pro (trnP(ugg)) and tRNA-Val (trnV(uac)) genes, complete sequence; translation elongation factor Tu (tufA) gene, complete cds; tRNA-Glu (trnE(uuc)) gene, complete sequence; ribosomal protein L36 (rpl36) and apocytochrome b6 of cytochrome b6/f complex (petB) genes, complete cds; tRNA-His (trnH(gug)) gene, complete sequence; ribosomal protein S12 (rps12), photosystem I subunit IX (psaJ), ATP synthase CF0 A subunit (atpI), and photosystem II reaction center subunit X (psbJ) genes, complete cds; PsaA (psaA) gene, exons 1 and 2 and partial cds; tRNA-Arg (trnR(acg)) and tRNA-Thr (trnT(ugu)) genes, complete sequence; ribosomal protein S19 (rps19), ribosomal protein L2 (rpl2), ribosomal protein L23 (rpl23), chloroplast envelope membrane protein (cemA), photosystem II protein I (psbI), and CF1 alpha subunit of ATP synthase (atpA) genes, complete cds; tRNA-Trp (trnW(cca)) gene, complete sequence; ribosomal protein S4 (rps4) gene, complete cds; tRNA-Gly (trnG(gcc)) and tRNA-Met (trnM(cau)) genes, complete sequence; proteolytic subunit 2 of clp protease (clpP) gene, complete cds; tRNA-Leu (trnL(uag)) gene, complete sequence; ATP-binding subunit of protochlorophyllide reductase (chlL) gene, complete cds; tRNA-Met (trnM(cau)) gene, complete sequence; subunit VI of cytochrome b6/f complex (petL) and photosystem I iron-sulfur center (psaC) genes, complete cds; tRNA-Phe (trnF(gaa)) gene, complete sequence; ribosomal protein L32 (rpl32) gene, partial cds; ribosomal protein L20 (rpl20) gene, complete cds; tRNA-Ser (trnS(uga)) gene, complete sequence; photosystem II protein D2 (psbD) gene, complete cds; tRNA-Asn (trnN(guu)) and tRNA-Cys (trnC(gca)) genes, complete sequence; photosystem II protein K (psbK) gene, complete cds; tRNA-Gly (trnG(ucc)) gene, complete sequence; and CF1 beta subunit of ATP synthase (atpB), cell division protein (ftsH), and PSII 43 kDa protein (psbC) genes, complete cds; chloroplast", "blastn", "34531", "414", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Chlorophyceae", "Chlamydomonadales", "Protosiphonaceae", "Protosiphon", "Protosiphon botryoides"], [2472615, "PRJNA734348_P_NODE_39262_length_312_cov_4.025105_g38566_i0", "PRJNA734348", "39262", "312", "4.025105", "12.5583276", "Trebouxiophyceae", "75966", "Plants", "Plants", "161", "4.65e-35", "", "NTclustered", "gi|1169296931|gb|KY364701.1|", "63676", "g38566", "i0", "88.148", "9.22435897435897", "135", "16", "43", "0", "178", "312", "5552", "5418", "Chloroidium ellipsoideum 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence", "blastn", "2878", "161", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Trebouxiophyceae", "Watanabeales", "Watanabeaceae", "Chloroidium", "Chloroidium ellipsoideum"], [5025319, "PRJNA734348_P_NODE_18864_length_469_cov_2.512626_g18174_i0", "PRJNA734348", "18864", "469", "2.512626", "11.78421594", "Eukaryota", "2759", "Plants", "Plants", "806", "0", "", "NTclustered", "gi|1189013852|gb|MF034633.1|", "43939", "g18174", "i0", "97.655", "100.00852878464801", "469", "11", "100", "0", "1", "469", "617", "1085", "Hazenia basiliensis strain ULVO-15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence", "blastn", "46904", "811", "0.99383477188656", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Ulvophyceae", "Ulotrichales", "Hazeniaceae", "Hazenia", "Hazenia basiliensis"], [6301615, "PRJNA734348_P_NODE_89565_length_252_cov_2.944134_g88867_i0", "PRJNA734348", "89565", "252", "2.944134", "7.41921768", "Scenedesmaceae", "3086", "Plants", "Plants", "399", "7.079999999999999e-107", "", "NTclustered", "gi|2692951716|ref|NC_086754.1|", "119574", "g88867", "i0", "95.238", "115.015873015873", "252", "12", "100", "0", "1", "252", "89543", "89794", "Tetradesmus dimorphus strain FBCC-A0330 chloroplast, complete genome", "blastn", "28984", "399", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Chlorophyceae", "Sphaeropleales", "Scenedesmaceae", "Tetradesmus", "Tetradesmus dimorphus"], [8370258, "PRJNA734348_P_NODE_113787_length_246_cov_0.849711_g113089_i0", "PRJNA734348", "113787", "246", "0.849711", "2.09028906", "Coelastrella saipanensis", "152631", "Plants", "Plants", "375", "1.16e-99", "", "NTclustered", "gi|1642520538|ref|NC_042181.1|", "152631", "g113089", "i0", "96.104", "157.467479674797", "231", "8", "94", "1", "1", "231", "109885", "109656", "Coelastrella saipanensis chloroplast, complete genome", "blastn", "38737", "375", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Chlorophyceae", "Sphaeropleales", "Scenedesmaceae", "Coelastrella", "Coelastrella saipanensis"], [8372003, "PRJNA734348_P_NODE_69047_length_270_cov_4.055838_g68349_i0", "PRJNA734348", "69047", "270", "4.055838", "10.9507626", "Chlorosarcinopsis eremi", "332213", "Plants", "Plants", "394", "3.57e-105", "", "NTclustered", "gi|1432231416|gb|MH654823.1|", "332213", "g68349", "i0", "93.015", "72.5703703703704", "272", "15", "100", "4", "1", "270", "3643", "3374", "Chlorosarcinopsis eremi strain MKA.28 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence", "blastn", "19594", "394", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Chlorophyceae", "Chlorosarcinales", "Chlorosarcinaceae", "Chlorosarcinopsis", "Chlorosarcinopsis eremi"], [10125701, "PRJNA734348_P_NODE_22568_length_416_cov_0.883382_g21873_i0", "PRJNA734348", "22568", "416", "0.883382", "3.67486912", "Prototheca", "3110", "Plants", "Plants", "689", "0", "", "NTclustered", "gi|1334452569|gb|MG832932.1|", "3112", "g21873", "i0", "99.734", "97.6778846153846", "376", "1", "100", "0", "41", "416", "946", "571", "Prototheca zopfii isolate o23c small subunit ribosomal RNA gene, partial sequence", "blastn", "40634", "689", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Trebouxiophyceae", "Chlorellales", "Chlorellaceae", "Prototheca", "Prototheca zopfii"], [11401238, "PRJNA734348_P_NODE_88589_length_253_cov_2.200000_g87891_i0", "PRJNA734348", "88589", "253", "2.2", "5.566", "Prototheca", "3110", "Plants", "Plants", "451", "1.94e-122", "", "NTclustered", "gi|378925972|gb|JQ070133.1|", "3112", "g87891", "i0", "99.2", "61.2252964426877", "250", "2", "99", "0", "4", "253", "556", "307", "Prototheca zopfii strain ATCC MYA-4789 28S ribosomal RNA gene, complete sequence", "blastn", "15490", "451", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Trebouxiophyceae", "Chlorellales", "Chlorellaceae", "Prototheca", "Prototheca zopfii"], [13951466, "PRJNA734348_P_NODE_86631_length_255_cov_1.478022_g85933_i0", "PRJNA734348", "86631", "255", "1.478022", "3.7689561", "Eukaryota", "2759", "Plants", "Plants", "460", "3.25e-125", "", "NTclustered", "gi|1898545223|gb|MT951391.1|", "3078", "g85933", "i0", "99.216", "99.2470588235294", "255", "2", "100", "0", "1", "255", "1662", "1408", "Auxenochlorella pyrenoidosa strain Ozcimen001 small subunit ribosomal RNA gene, partial sequence", "blastn", "25308", "460", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Trebouxiophyceae", "Chlorellales", "Chlorellaceae", "Auxenochlorella", "Auxenochlorella pyrenoidosa"], [14748158, "PRJNA734348_P_NODE_95872_length_250_cov_0.870056_g95174_i0", "PRJNA734348", "95872", "250", "0.870056", "2.17514", "Trebouxia sp. SL0000003", "3350044", "Plants", "Plants", "56.5", "0.002", "", "NTclustered", "gi|2917929696|emb|OZ234923.1|", "3350044", "g95174", "i0", "100", "0.792", "30", "0", "12", "0", "212", "241", "2061772", "2061743", "Trebouxia sp. SL0000003 genome assembly, chromosome: 18", "blastn", "198", "56.5", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Trebouxiophyceae", "Trebouxiales", "Trebouxiaceae", "Trebouxia", "Trebouxia sp. SL0000003"], [17297071, "PRJNA734348_P_NODE_82934_length_258_cov_1.616216_g82236_i0", "PRJNA734348", "82934", "258", "1.616216", "4.16983728", "Gloeotilopsis planctonica", "34157", "Plants", "Plants", "427", "3.34e-115", "", "NTclustered", "gi|1052423830|gb|KX306824.1|", "34157", "g82236", "i0", "96.512", "43.2403100775194", "258", "9", "100", "0", "1", "258", "9924", "10181", "Gloeotilopsis planctonica chloroplast, complete genome", "blastn", "11156", "427", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Ulvophyceae", "Ulotrichales", "Ulotrichaceae", "Gloeotilopsis", "Gloeotilopsis planctonica"], [22396693, "PRJNA734348_P_NODE_97838_length_250_cov_0.870056_g97140_i0", "PRJNA734348", "97838", "250", "0.870056", "2.17514", "Protosiphon botryoides", "44656", "Plants", "Plants", "200", "7.639999999999999e-47", "", "NTclustered", "gi|1509778905|gb|MG778499.1|", "44656", "g97140", "i0", "92.754", "56.956", "138", "10", "76", "0", "60", "197", "35684", "35821", "Protosiphon botryoides ribosomal protein S2 (rps2) gene, complete cds; tRNA-Asp (trnD(guc)) gene, complete sequence; 10 kDa phosphoprotein of photosystem II (psbH), photosystem II protein N (psbN), photosystem II protein T (psbT), and PSII 47 kDa protein (psbB) genes, complete cds; tRNA-Tyr (trnY(gua)) gene, complete sequence; ribosomal protein S11 (rps11), P700 apoprotein A2 of photosystem I (psaB), and RNA polymerase alpha subunit (rpoA) genes, complete cds; tRNA-Met (trnM(cau)) and tRNA-Lys (trnK(uuu)) genes, complete sequence; hypothetical chloroplast RF12 (ycf12) gene, complete cds; tRNA-Ser (trnS(gcu)) gene, complete sequence; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, complete cds; tRNA-Leu (trnL(uaa)) gene, complete sequence; hypothetical chloroplast RF3 (ycf3), hypothetical chloroplast protein RF4 (ycf4), ribosomal protein S9 (rps9), photosystem II protein V (psbE), ATP synthase CF0 B subunit (atpF), ATP synthase CF0 C subunit (atpH), ATP synthase CF1 epsilon subunit (atpE), ribosomal protein S7 (rps7), ribosomal protein S14 (rps14), M protein of photosystem II (psbM), photosystem II reaction center Z protein (psbZ), and heme attachment to plastid cytochrome c (ccsA) genes, complete cds; 5S ribosomal RNA (rrf), large subunit ribosomal RNA (rrl), tRNA-Ala (trnA(ugc)), tRNA-Ile (trnI(gau)), and small subunit ribosomal RNA (rrs) genes, complete sequence; protochlorophyllide reductase subunit B (chlB) gene, complete cds; tRNA-Arg (trnR(ucu)) gene, complete sequence; cytochrome b6/f complex subunit 4 (petD), apocytochrome f of cytochrome b6/f complex (petA), and RNA polymerase beta' subunit (rpoC1) genes, complete cds; tRNA-Pro (trnP(ugg)) and tRNA-Val (trnV(uac)) genes, complete sequence; translation elongation factor Tu (tufA) gene, complete cds; tRNA-Glu (trnE(uuc)) gene, complete sequence; ribosomal protein L36 (rpl36) and apocytochrome b6 of cytochrome b6/f complex (petB) genes, complete cds; tRNA-His (trnH(gug)) gene, complete sequence; ribosomal protein S12 (rps12), photosystem I subunit IX (psaJ), ATP synthase CF0 A subunit (atpI), and photosystem II reaction center subunit X (psbJ) genes, complete cds; PsaA (psaA) gene, exons 1 and 2 and partial cds; tRNA-Arg (trnR(acg)) and tRNA-Thr (trnT(ugu)) genes, complete sequence; ribosomal protein S19 (rps19), ribosomal protein L2 (rpl2), ribosomal protein L23 (rpl23), chloroplast envelope membrane protein (cemA), photosystem II protein I (psbI), and CF1 alpha subunit of ATP synthase (atpA) genes, complete cds; tRNA-Trp (trnW(cca)) gene, complete sequence; ribosomal protein S4 (rps4) gene, complete cds; tRNA-Gly (trnG(gcc)) and tRNA-Met (trnM(cau)) genes, complete sequence; proteolytic subunit 2 of clp protease (clpP) gene, complete cds; tRNA-Leu (trnL(uag)) gene, complete sequence; ATP-binding subunit of protochlorophyllide reductase (chlL) gene, complete cds; tRNA-Met (trnM(cau)) gene, complete sequence; subunit VI of cytochrome b6/f complex (petL) and photosystem I iron-sulfur center (psaC) genes, complete cds; tRNA-Phe (trnF(gaa)) gene, complete sequence; ribosomal protein L32 (rpl32) gene, partial cds; ribosomal protein L20 (rpl20) gene, complete cds; tRNA-Ser (trnS(uga)) gene, complete sequence; photosystem II protein D2 (psbD) gene, complete cds; tRNA-Asn (trnN(guu)) and tRNA-Cys (trnC(gca)) genes, complete sequence; photosystem II protein K (psbK) gene, complete cds; tRNA-Gly (trnG(ucc)) gene, complete sequence; and CF1 beta subunit of ATP synthase (atpB), cell division protein (ftsH), and PSII 43 kDa protein (psbC) genes, complete cds; chloroplast", "blastn", "14239", "200", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Chlorophyceae", "Chlamydomonadales", "Protosiphonaceae", "Protosiphon", "Protosiphon botryoides"], [23669984, "PRJNA734348_P_NODE_111599_length_246_cov_0.890173_g110901_i0", "PRJNA734348", "111599", "246", "0.890173", "2.18982558", "Ulva laetevirens", "585852", "Plants", "Plants", "52.8", "0.022", "", "NTclustered", "gi|2181839309|gb|MW531676.1|", "585852", "g110901", "i0", "100", "0.113821138211382", "28", "0", "11", "0", "176", "203", "37002", "36975", "Ulva laetevirens isolate CNS00533 chloroplast, complete genome", "blastn", "28", "52.8", "1", "Eukaryota", "core chlorophytes", "Viridiplantae", "Chlorophyta", "Ulvophyceae", "Ulvales", "Ulvaceae", "Ulva", "Ulva laetevirens"]], "truncated": false, "filtered_table_rows_count": 14, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_clade\" = :p2 order by rowid limit 101", "params": {"p0": "blastn", "p1": "PRJNA734348", "p2": "core chlorophytes"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA734348&tax_clade=core+chlorophytes", "results": 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"http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA734348&tax_clade=core+chlorophytes&tax_superkingdom=Eukaryota", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA734348&tax_clade=core+chlorophytes", "results": [{"value": "core chlorophytes", "label": "core chlorophytes", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA734348", "selected": true}], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA734348&tax_clade=core+chlorophytes", "results": [{"value": "Viridiplantae", "label": "Viridiplantae", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA734348&tax_clade=core+chlorophytes&tax_kingdom=Viridiplantae", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA734348&tax_clade=core+chlorophytes", "results": [{"value": "Chlorophyta", "label": "Chlorophyta", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA734348&tax_clade=core+chlorophytes&tax_phylum=Chlorophyta", "selected": false}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 147.32089300377993}