{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"blastn\", bioproject = \"PRJNA560932\" and tax_superkingdom = \"Viruses\"", "rows": [[1130570, "PRJNA560932_P_NODE_25641_length_352_cov_1.713262_g25285_i0", "PRJNA560932", "25641", "352", "1.713262", "6.03068224", "Betaretrovirus", "140052", "Viruses", "Viruses", "651", "0", "", "NTclustered", "gi|9627014|ref|NC_001514.1|", "11856", "g25285", "i0", "100", "3.59659090909091", "352", "0", "100", "0", "1", "352", "4365", "4014", "Squirrel monkey retrovirus - HLB, complete genome", "blastn", "1266", "651", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus squmon"], [2405940, "PRJNA560932_P_NODE_24702_length_358_cov_1.059649_g24346_i0", "PRJNA560932", "24702", "358", "1.059649", "3.7935434200000002", "Mimivirus", "315393", "Viruses", "Viruses", "189", "2.48e-43", "", "NTclustered", "gi|2267817464|gb|MW685904.1|", "212035", "g24346", "i0", "80.233", "16.8128491620112", "258", "46", "72", "5", "1", "256", "795379", "795125", "Acanthamoeba polyphaga mimivirus isolate M4, complete genome", "blastn", "6019", "189", "1", "Viruses", null, "Bamfordvirae", "Nucleocytoviricota", "Megaviricetes", "Imitervirales", "Mimiviridae", "Mimivirus", "Mimivirus bradfordmassiliense"], [2405950, "PRJNA560932_P_NODE_33302_length_314_cov_1.481328_g32946_i0", "PRJNA560932", "33302", "314", "1.481328", "4.65136992", "Betaretrovirus", "140052", "Viruses", "Viruses", "569", "6.559999999999998e-158", "", "NTclustered", "gi|9627014|ref|NC_001514.1|", "11856", "g32946", "i0", "99.363", "4.28980891719745", "314", "2", "100", "0", "1", "314", "7700", "8013", "Squirrel monkey retrovirus - HLB, complete genome", "blastn", "1347", "569", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus squmon"], [4372274, "PRJNA560932_P_NODE_57804_length_247_cov_0.885057_g57448_i0", "PRJNA560932", "57804", "247", "0.885057", "2.18609079", "Caudoviricetes sp.", "2832643", "Viruses", "Viruses", "451", "1.88e-122", "", "NTclustered", "gi|2914928861|gb|OR221539.1|", "2832643", "g57448", "i0", "99.595", "99.7125506072875", "247", "1", "100", "0", "1", "247", "14024", "13778", "MAG: Caudoviricetes sp. isolate MSP1537 genomic sequence", "blastn", "24629", "451", "1", "Viruses", null, "Heunggongvirae", "Uroviricota", "Caudoviricetes", null, null, null, "Caudoviricetes sp."], [6234114, "PRJNA560932_P_NODE_20385_length_390_cov_1.552050_g20029_i0", "PRJNA560932", "20385", "390", "1.55205", "6.052995", "Betaretrovirus", "140052", "Viruses", "Viruses", "710", "0", "", "NTclustered", "gi|1666023499|gb|MK561030.1|", "11856", "g20029", "i0", "99.487", "3.15128205128205", "390", "2", "100", "0", "1", "390", "1053", "664", "Squirrel monkey retrovirus, complete genome", "blastn", "1229", "710", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus squmon"], [6922692, "PRJNA560932_P_NODE_41606_length_283_cov_1.195238_g41250_i0", "PRJNA560932", "41606", "283", "1.195238", "3.38252354", "Caudoviricetes sp.", "2832643", "Viruses", "Viruses", "95.3", "4.28e-15", "", "NTclustered", "gi|2914981896|gb|OR222105.1|", "2832643", "g41250", "i0", "98.148", "25.7526501766784", "54", "1", "19", "0", "225", "278", "4", "57", "MAG: Caudoviricetes sp. isolate MSP0005 genomic sequence", "blastn", "7288", "95.3", "1", "Viruses", null, "Heunggongvirae", "Uroviricota", "Caudoviricetes", null, null, null, "Caudoviricetes sp."], [8197721, "PRJNA560932_P_NODE_53867_length_250_cov_0.870056_g53511_i0", "PRJNA560932", "53867", "250", "0.870056", "2.17514", "Lentivirus simimdef", "3418654", "Viruses", "Viruses", "52.8", "0.023", "", "NTclustered", "gi|444342259|gb|JX498544.1|", "11723", "g53511", "i0", "100", "2.016", "28", "0", "11", "0", "143", "170", "482", "455", "Simian immunodeficiency virus isolate P146.P1A12 from USA rev protein (rev) gene, complete cds; tat protein (tat) gene, partial cds; envelope glycoprotein (env) gene, complete cds; and nonfunctional nef protein (nef) gene, partial sequence", "blastn", "504", "52.8", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Lentivirus", "Lentivirus simimdef"], [9473074, "PRJNA560932_P_NODE_15768_length_442_cov_1.149051_g15413_i0", "PRJNA560932", "15768", "442", "1.149051", "5.07880542", "Betaretrovirus murmamtum", "3427295", "Viruses", "Viruses", "784", "0", "", "NTclustered", "gi|3273865|gb|AF071010.1|AF071010", "11757", "g15413", "i0", "98.643", "54.1131221719457", "442", "6", "100", "0", "1", "442", "2350", "2791", "Mouse mammary tumor virus putative integrase, env polyprotein, and superantigen mRNA, complete cds", "blastn", "23918", "784", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus murmamtum"], [9473123, "PRJNA560932_P_NODE_20688_length_387_cov_4.952229_g20332_i0", "PRJNA560932", "20688", "387", "4.952229", "19.16512623", "Gammaretrovirus murleu", "3428959", "Viruses", "Viruses", "566", "1.0699999999999999e-156", "", "NTclustered", "gi|332046|gb|M13080.1|MLVLTRAB", "11786", "g20332", "i0", "98.746", "121.509043927649", "319", "3", "98", "1", "70", "387", "125", "443", "Murine leukemia virus RadLV variant, proviral LTR from cell line Ti-8", "blastn", "47024", "566", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Gammaretrovirus", "Gammaretrovirus murleu"], [10059076, "PRJNA560932_P_NODE_14888_length_454_cov_2.228346_g14533_i0", "PRJNA560932", "14888", "454", "2.228346", "10.11669084", "Betaretrovirus", "140052", "Viruses", "Viruses", "826", "0", "", "NTclustered", "gi|9627014|ref|NC_001514.1|", "11856", "g14533", "i0", "99.559", "8.51982378854625", "454", "1", "100", "1", "1", "454", "8199", "8651", "Squirrel monkey retrovirus - HLB, complete genome", "blastn", "3868", "826", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus squmon"], [12023659, "PRJNA560932_P_NODE_24010_length_362_cov_2.453287_g23654_i0", "PRJNA560932", "24010", "362", "2.453287", "8.88089894", "Alphapapillomavirus 7", "337042", "Viruses", "Viruses", "669", "0", "", "NTclustered", "gi|2733486712|gb|PP781986.1|", "333761", "g23654", "i0", "100", "100", "362", "0", "100", "0", "1", "362", "1460", "1099", "Human papillomavirus 18 isolate InDRE-41Tams/Mexico/2023, complete genome", "blastn", "36200", "669", "1", "Viruses", null, "Shotokuvirae", "Cossaviricota", "Papovaviricetes", "Zurhausenvirales", "Papillomaviridae", "Alphapapillomavirus", "Alphapapillomavirus 7"], [13298819, "PRJNA560932_P_NODE_51731_length_251_cov_1.724719_g51375_i0", "PRJNA560932", "51731", "251", "1.724719", "4.32904469", "Hokovirus HKV1", "1977638", "Viruses", "Viruses", "183", "7.73e-42", "", "NTclustered", "gi|1174571674|gb|KY684104.1|", "1977638", "g51375", "i0", "84.699", "107.107569721116", "183", "28", "73", "0", "67", "249", "162161", "161979", "Hokovirus HKV1 isolate HKV1 clone Hokovirus_2, sequence", "blastn", "26884", "183", "1", "Viruses", null, "Bamfordvirae", "Nucleocytoviricota", "Megaviricetes", "Imitervirales", "Mimiviridae", "Hokovirus", "Hokovirus HKV1"], [16433272, "PRJNA560932_P_NODE_59113_length_246_cov_1.335260_g58757_i0", "PRJNA560932", "59113", "246", "1.33526", "3.2847396", "Betaretrovirus", "140052", "Viruses", "Viruses", "455", "1.4500000000000002e-123", "", "NTclustered", "gi|9627014|ref|NC_001514.1|", "11856", "g58757", "i0", "100", "4", "246", "0", "100", "0", "1", "246", "6488", "6733", "Squirrel monkey retrovirus - HLB, complete genome", "blastn", "984", "455", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus squmon"], [17122531, "PRJNA560932_P_NODE_58134_length_247_cov_0.885057_g57778_i0", "PRJNA560932", "58134", "247", "0.885057", "2.18609079", "Faxonius propinquus nudivirus", "3139431", "Viruses", "Viruses", "56.5", "0.002", "", "NTclustered", "gi|2717329057|gb|PP539709.1|", "3139431", "g57778", "i0", "92.683", "0.331983805668016", "41", "0", "16", "2", "11", "49", "124550", "124589", "Faxonius propinquus nudivirus isolate FP6H, complete genome", "blastn", "82", "56.5", "1", "Viruses", null, null, null, "Naldaviricetes", "Lefavirales", "Nudiviridae", null, "Faxonius propinquus nudivirus"], [18396660, "PRJNA560932_P_NODE_49675_length_258_cov_1.162162_g49319_i0", "PRJNA560932", "49675", "258", "1.162162", "2.99837796", "Betaretrovirus murmamtum", "3427295", "Viruses", "Viruses", "460", "3.29e-125", "", "NTclustered", "gi|3273865|gb|AF071010.1|AF071010", "11757", "g49319", "i0", "98.837", "69.2945736434109", "258", "3", "100", "0", "1", "258", "1610", "1353", "Mouse mammary tumor virus putative integrase, env polyprotein, and superantigen mRNA, complete cds", "blastn", "17878", "460", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus murmamtum"], [18981943, "PRJNA560932_P_NODE_29435_length_331_cov_2.875969_g29079_i0", "PRJNA560932", "29435", "331", "2.875969", "9.51945739", "Betaretrovirus", "140052", "Viruses", "Viruses", "612", "1.14e-170", "", "NTclustered", "gi|9627014|ref|NC_001514.1|", "11856", "g29079", "i0", "100", "4.20845921450151", "331", "0", "100", "0", "1", "331", "5862", "5532", "Squirrel monkey retrovirus - HLB, complete genome", "blastn", "1393", "612", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus squmon"], [19671113, "PRJNA560932_P_NODE_30696_length_326_cov_1.217391_g30340_i0", "PRJNA560932", "30696", "326", "1.217391", "3.96869466", "Microviridae sp.", "2202644", "Viruses", "Viruses", "52.8", "0.031", "", "NTclustered", "gi|2636866959|gb|OR407820.1|", "2202644", "g30340", "i0", "100", "0.0858895705521472", "28", "0", "9", "0", "204", "231", "364", "391", "MAG: Microviridae sp. isolate xizangnaqu01-28471 genomic sequence", "blastn", "28", "52.8", "1", "Viruses", null, "Sangervirae", "Phixviricota", "Malgrandaviricetes", "Petitvirales", "Microviridae", null, "Microviridae sp."], [19671219, "PRJNA560932_P_NODE_43856_length_276_cov_1.310345_g43500_i0", "PRJNA560932", "43856", "276", "1.310345", "3.6165522", "Bacteriophage sp.", "38018", "Viruses", "Viruses", "56.5", "0.002", "", "NTclustered", "gi|2293573864|gb|OP072313.1|", "38018", "g43500", "i0", "90.909", "0.264492753623188", "44", "1", "16", "2", "64", "107", "70212", "70252", "MAG: Bacteriophage sp. isolate 2452_64193, partial genome", "blastn", "73", "56.5", "1", "Viruses", null, null, null, null, null, null, null, "Bacteriophage sp."], [20257102, "PRJNA560932_P_NODE_5436_length_735_cov_1.993958_g5105_i0", "PRJNA560932", "5436", "735", "1.993958", "14.6555913", "Tequatrovirus", "10663", "Viruses", "Viruses", "1079", "0", "", "NTclustered", "gi|2721715921|emb|OZ035787.1|", "10665", "g5105", "i0", "100", "79.4557823129252", "584", "0", "79", "0", "152", "735", "38777", "38194", "Tequatrovirus T4 genome assembly, chromosome: 1", "blastn", "58400", "1079", "1", "Viruses", null, "Heunggongvirae", "Uroviricota", "Caudoviricetes", "Pantevenvirales", "Straboviridae", "Tequatrovirus", "Tequatrovirus T4"], [20946763, "PRJNA560932_P_NODE_28157_length_338_cov_1.773585_g27801_i0", "PRJNA560932", "28157", "338", "1.773585", "5.9947173", "Betaretrovirus squmon", "3427297", "Viruses", "Viruses", "625", "1.4999999999999999e-174", "", "NTclustered", "gi|1666023499|gb|MK561030.1|", "11856", "g27801", "i0", "100", "4", "338", "0", "100", "0", "1", "338", "2431", "2094", "Squirrel monkey retrovirus, complete genome", "blastn", "1352", "625", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus squmon"], [22221980, "PRJNA560932_P_NODE_8218_length_606_cov_1.744841_g7865_i0", "PRJNA560932", "8218", "606", "1.744841", "10.57373646", "Lentivirus humimdef1", "3418650", "Viruses", "Viruses", "62.1", "9.97e-5", "", "NTclustered", "gi|407734945|gb|JX447155.1|", "11676", "g7865", "i0", "95", "0.132013201320132", "40", "0", "7", "2", "27", "66", "4357", "4394", "HIV-1 isolate AA039a03R from Thailand pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds", "blastn", "80", "62.1", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Lentivirus", "Lentivirus humimdef1"], [22807673, "PRJNA560932_P_NODE_18_length_4859_cov_3.129545_g12_i0", "PRJNA560932", "18", "4859", "3.129545", "152.06459155", "Gammaretrovirus", "153135", "Viruses", "Viruses", "8346", "0", "", "NTclustered", "gi|1167936743|gb|KY574509.1|", "11786", "g12", "i0", "98.239", "97.1697880222268", "4771", "84", "98", "0", "75", "4845", "2472", "7242", "Murine leukemia virus isolate Akv2-C78, complete genome", "blastn", "472148", "8346", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Gammaretrovirus", "Gammaretrovirus murleu"], [22807687, "PRJNA560932_P_NODE_30458_length_327_cov_1.216535_g30102_i0", "PRJNA560932", "30458", "327", "1.216535", "3.97806945", "Betaretrovirus", "140052", "Viruses", "Viruses", "604", "1.8799999999999993e-168", "", "NTclustered", "gi|9627014|ref|NC_001514.1|", "11856", "g30102", "i0", "100", "3.75840978593272", "327", "0", "100", "0", "1", "327", "4724", "4398", "Squirrel monkey retrovirus - HLB, complete genome", "blastn", "1229", "604", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus squmon"]], "truncated": false, "filtered_table_rows_count": 23, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_superkingdom\" = :p2 order by rowid limit 101", "params": {"p0": "blastn", "p1": "PRJNA560932", "p2": "Viruses"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_superkingdom=Viruses", "results": [{"value": "PRJNA560932", "label": "PRJNA560932", "count": 23, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&tax_superkingdom=Viruses", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_superkingdom=Viruses", "results": [{"value": "blastn", "label": "blastn", "count": 23, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA560932&tax_superkingdom=Viruses", "selected": true}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_superkingdom=Viruses", "results": [{"value": "Viruses", "label": "Viruses", "count": 23, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932", "selected": true}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_superkingdom=Viruses", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_superkingdom=Viruses", "results": [{"value": "Pararnavirae", "label": "Pararnavirae", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_superkingdom=Viruses&tax_kingdom=Pararnavirae", "selected": false}, {"value": "Heunggongvirae", "label": "Heunggongvirae", "count": 3, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_superkingdom=Viruses&tax_kingdom=Heunggongvirae", "selected": false}, {"value": "Bamfordvirae", "label": "Bamfordvirae", "count": 2, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_superkingdom=Viruses&tax_kingdom=Bamfordvirae", "selected": false}, {"value": "Sangervirae", "label": "Sangervirae", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_superkingdom=Viruses&tax_kingdom=Sangervirae", "selected": false}, {"value": "Shotokuvirae", "label": "Shotokuvirae", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_superkingdom=Viruses&tax_kingdom=Shotokuvirae", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_superkingdom=Viruses", "results": [{"value": "Artverviricota", "label": "Artverviricota", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_superkingdom=Viruses&tax_phylum=Artverviricota", "selected": false}, {"value": "Uroviricota", "label": "Uroviricota", "count": 3, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_superkingdom=Viruses&tax_phylum=Uroviricota", "selected": false}, {"value": "Nucleocytoviricota", "label": "Nucleocytoviricota", "count": 2, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_superkingdom=Viruses&tax_phylum=Nucleocytoviricota", "selected": false}, {"value": "Cossaviricota", "label": "Cossaviricota", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_superkingdom=Viruses&tax_phylum=Cossaviricota", "selected": false}, {"value": "Phixviricota", "label": "Phixviricota", "count": 1, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_superkingdom=Viruses&tax_phylum=Phixviricota", "selected": false}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 216.733644998385}