{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"blastn\", bioproject = \"PRJNA560932\" and tax_kingdom = \"Pararnavirae\"", "rows": [[1130570, "PRJNA560932_P_NODE_25641_length_352_cov_1.713262_g25285_i0", "PRJNA560932", "25641", "352", "1.713262", "6.03068224", "Betaretrovirus", "140052", "Viruses", "Viruses", "651", "0", "", "NTclustered", "gi|9627014|ref|NC_001514.1|", "11856", "g25285", "i0", "100", "3.59659090909091", "352", "0", "100", "0", "1", "352", "4365", "4014", "Squirrel monkey retrovirus - HLB, complete genome", "blastn", "1266", "651", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus squmon"], [2405950, "PRJNA560932_P_NODE_33302_length_314_cov_1.481328_g32946_i0", "PRJNA560932", "33302", "314", "1.481328", "4.65136992", "Betaretrovirus", "140052", "Viruses", "Viruses", "569", "6.559999999999998e-158", "", "NTclustered", "gi|9627014|ref|NC_001514.1|", "11856", "g32946", "i0", "99.363", "4.28980891719745", "314", "2", "100", "0", "1", "314", "7700", "8013", "Squirrel monkey retrovirus - HLB, complete genome", "blastn", "1347", "569", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus squmon"], [6234114, "PRJNA560932_P_NODE_20385_length_390_cov_1.552050_g20029_i0", "PRJNA560932", "20385", "390", "1.55205", "6.052995", "Betaretrovirus", "140052", "Viruses", "Viruses", "710", "0", "", "NTclustered", "gi|1666023499|gb|MK561030.1|", "11856", "g20029", "i0", "99.487", "3.15128205128205", "390", "2", "100", "0", "1", "390", "1053", "664", "Squirrel monkey retrovirus, complete genome", "blastn", "1229", "710", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus squmon"], [8197721, "PRJNA560932_P_NODE_53867_length_250_cov_0.870056_g53511_i0", "PRJNA560932", "53867", "250", "0.870056", "2.17514", "Lentivirus simimdef", "3418654", "Viruses", "Viruses", "52.8", "0.023", "", "NTclustered", "gi|444342259|gb|JX498544.1|", "11723", "g53511", "i0", "100", "2.016", "28", "0", "11", "0", "143", "170", "482", "455", "Simian immunodeficiency virus isolate P146.P1A12 from USA rev protein (rev) gene, complete cds; tat protein (tat) gene, partial cds; envelope glycoprotein (env) gene, complete cds; and nonfunctional nef protein (nef) gene, partial sequence", "blastn", "504", "52.8", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Lentivirus", "Lentivirus simimdef"], [9473074, "PRJNA560932_P_NODE_15768_length_442_cov_1.149051_g15413_i0", "PRJNA560932", "15768", "442", "1.149051", "5.07880542", "Betaretrovirus murmamtum", "3427295", "Viruses", "Viruses", "784", "0", "", "NTclustered", "gi|3273865|gb|AF071010.1|AF071010", "11757", "g15413", "i0", "98.643", "54.1131221719457", "442", "6", "100", "0", "1", "442", "2350", "2791", "Mouse mammary tumor virus putative integrase, env polyprotein, and superantigen mRNA, complete cds", "blastn", "23918", "784", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus murmamtum"], [9473123, "PRJNA560932_P_NODE_20688_length_387_cov_4.952229_g20332_i0", "PRJNA560932", "20688", "387", "4.952229", "19.16512623", "Gammaretrovirus murleu", "3428959", "Viruses", "Viruses", "566", "1.0699999999999999e-156", "", "NTclustered", "gi|332046|gb|M13080.1|MLVLTRAB", "11786", "g20332", "i0", "98.746", "121.509043927649", "319", "3", "98", "1", "70", "387", "125", "443", "Murine leukemia virus RadLV variant, proviral LTR from cell line Ti-8", "blastn", "47024", "566", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Gammaretrovirus", "Gammaretrovirus murleu"], [10059076, "PRJNA560932_P_NODE_14888_length_454_cov_2.228346_g14533_i0", "PRJNA560932", "14888", "454", "2.228346", "10.11669084", "Betaretrovirus", "140052", "Viruses", "Viruses", "826", "0", "", "NTclustered", "gi|9627014|ref|NC_001514.1|", "11856", "g14533", "i0", "99.559", "8.51982378854625", "454", "1", "100", "1", "1", "454", "8199", "8651", "Squirrel monkey retrovirus - HLB, complete genome", "blastn", "3868", "826", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus squmon"], [16433272, "PRJNA560932_P_NODE_59113_length_246_cov_1.335260_g58757_i0", "PRJNA560932", "59113", "246", "1.33526", "3.2847396", "Betaretrovirus", "140052", "Viruses", "Viruses", "455", "1.4500000000000002e-123", "", "NTclustered", "gi|9627014|ref|NC_001514.1|", "11856", "g58757", "i0", "100", "4", "246", "0", "100", "0", "1", "246", "6488", "6733", "Squirrel monkey retrovirus - HLB, complete genome", "blastn", "984", "455", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus squmon"], [18396660, "PRJNA560932_P_NODE_49675_length_258_cov_1.162162_g49319_i0", "PRJNA560932", "49675", "258", "1.162162", "2.99837796", "Betaretrovirus murmamtum", "3427295", "Viruses", "Viruses", "460", "3.29e-125", "", "NTclustered", "gi|3273865|gb|AF071010.1|AF071010", "11757", "g49319", "i0", "98.837", "69.2945736434109", "258", "3", "100", "0", "1", "258", "1610", "1353", "Mouse mammary tumor virus putative integrase, env polyprotein, and superantigen mRNA, complete cds", "blastn", "17878", "460", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus murmamtum"], [18981943, "PRJNA560932_P_NODE_29435_length_331_cov_2.875969_g29079_i0", "PRJNA560932", "29435", "331", "2.875969", "9.51945739", "Betaretrovirus", "140052", "Viruses", "Viruses", "612", "1.14e-170", "", "NTclustered", "gi|9627014|ref|NC_001514.1|", "11856", "g29079", "i0", "100", "4.20845921450151", "331", "0", "100", "0", "1", "331", "5862", "5532", "Squirrel monkey retrovirus - HLB, complete genome", "blastn", "1393", "612", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus squmon"], [20946763, "PRJNA560932_P_NODE_28157_length_338_cov_1.773585_g27801_i0", "PRJNA560932", "28157", "338", "1.773585", "5.9947173", "Betaretrovirus squmon", "3427297", "Viruses", "Viruses", "625", "1.4999999999999999e-174", "", "NTclustered", "gi|1666023499|gb|MK561030.1|", "11856", "g27801", "i0", "100", "4", "338", "0", "100", "0", "1", "338", "2431", "2094", "Squirrel monkey retrovirus, complete genome", "blastn", "1352", "625", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus squmon"], [22221980, "PRJNA560932_P_NODE_8218_length_606_cov_1.744841_g7865_i0", "PRJNA560932", "8218", "606", "1.744841", "10.57373646", "Lentivirus humimdef1", "3418650", "Viruses", "Viruses", "62.1", "9.97e-5", "", "NTclustered", "gi|407734945|gb|JX447155.1|", "11676", "g7865", "i0", "95", "0.132013201320132", "40", "0", "7", "2", "27", "66", "4357", "4394", "HIV-1 isolate AA039a03R from Thailand pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds", "blastn", "80", "62.1", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Lentivirus", "Lentivirus humimdef1"], [22807673, "PRJNA560932_P_NODE_18_length_4859_cov_3.129545_g12_i0", "PRJNA560932", "18", "4859", "3.129545", "152.06459155", "Gammaretrovirus", "153135", "Viruses", "Viruses", "8346", "0", "", "NTclustered", "gi|1167936743|gb|KY574509.1|", "11786", "g12", "i0", "98.239", "97.1697880222268", "4771", "84", "98", "0", "75", "4845", "2472", "7242", "Murine leukemia virus isolate Akv2-C78, complete genome", "blastn", "472148", "8346", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Gammaretrovirus", "Gammaretrovirus murleu"], [22807687, "PRJNA560932_P_NODE_30458_length_327_cov_1.216535_g30102_i0", "PRJNA560932", "30458", "327", "1.216535", "3.97806945", "Betaretrovirus", "140052", "Viruses", "Viruses", "604", "1.8799999999999993e-168", "", "NTclustered", "gi|9627014|ref|NC_001514.1|", "11856", "g30102", "i0", "100", "3.75840978593272", "327", "0", "100", "0", "1", "327", "4724", "4398", "Squirrel monkey retrovirus - HLB, complete genome", "blastn", "1229", "604", "1", "Viruses", null, "Pararnavirae", "Artverviricota", "Revtraviricetes", "Ortervirales", "Retroviridae", "Betaretrovirus", "Betaretrovirus squmon"]], "truncated": false, "filtered_table_rows_count": 14, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_kingdom\" = :p2 order by rowid limit 101", "params": {"p0": "blastn", "p1": "PRJNA560932", "p2": "Pararnavirae"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_kingdom=Pararnavirae", "results": [{"value": "PRJNA560932", "label": "PRJNA560932", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&tax_kingdom=Pararnavirae", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_kingdom=Pararnavirae", "results": [{"value": "blastn", "label": "blastn", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA560932&tax_kingdom=Pararnavirae", "selected": true}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_kingdom=Pararnavirae", "results": [{"value": "Viruses", "label": "Viruses", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_kingdom=Pararnavirae&tax_superkingdom=Viruses", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_kingdom=Pararnavirae", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_kingdom=Pararnavirae", "results": [{"value": "Pararnavirae", "label": "Pararnavirae", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932", "selected": true}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_kingdom=Pararnavirae", "results": [{"value": "Artverviricota", "label": "Artverviricota", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA560932&tax_kingdom=Pararnavirae&tax_phylum=Artverviricota", "selected": false}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 332.1025129989721}