{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"blastn\", bioproject = \"PRJNA316313\" and tax_phylum = \"Thermodesulfobacteriota\"", "rows": [[386305, "PRJNA316313_P_NODE_156801_length_187_cov_4.420000_g155415_i0", "PRJNA316313", "156801", "187", "4.42", "8.2654", "Nitratidesulfovibrio sp. HK-II", "2009266", "Bacteria", "Bacteria", "93.5", "9.43e-15", "", "NTclustered", "gi|2791413552|dbj|AP036014.1|", "2009266", "g155415", "i0", "89.189", "3.5668449197861", "74", "8", "40", "0", "3", "76", "2030826", "2030753", "Nitratidesulfovibrio sp. HK-II DNA, complete genome", "blastn", "667", "93.5", "1", "Bacteria", null, "Pseudomonadati", "Thermodesulfobacteriota", "Desulfovibrionia", "Desulfovibrionales", "Desulfovibrionaceae", "Nitratidesulfovibrio", "Nitratidesulfovibrio sp. HK-II"], [387936, "PRJNA316313_P_NODE_438641_length_151_cov_4.000000_g437255_i0", "PRJNA316313", "438641", "151", "4", "6.04", "Thermodesulfobacteriota bacterium", "2202153", "Bacteria", "Bacteria", "62.1", "2.05e-5", "", "NTclustered", "gi|2893358418|emb|OZ220710.1|", "2202153", "g437255", "i0", "94.872", "0.443708609271523", "39", "2", "26", "0", "108", "146", "101462", "101424", "MAG: Thermodesulfobacteriota bacterium isolate dce1034a-8f23-488c-aa07-39e6c80a0035 genome assembly, chromosome: 1", "blastn", "67", "62.1", "1", "Bacteria", null, "Pseudomonadati", "Thermodesulfobacteriota", null, null, null, null, "Thermodesulfobacteriota bacterium"], [1067554, "PRJNA316313_P_NODE_190681_length_187_cov_3.593333_g189295_i0", "PRJNA316313", "190681", "187", "3.593333", "6.71953271", "Desulfovibrio", "872", "Bacteria", "Bacteria", "102", "1.57e-17", "", "NTclustered", "gi|1894914451|emb|LT984798.1|", "631220", "g189295", "i0", "90.789", "1.2192513368984", "76", "7", "41", "0", "112", "187", "2913897", "2913972", "Desulfovibrio sp. G11 isolate G11PacBio genome assembly, chromosome: 1", "blastn", "228", "102", "1", "Bacteria", null, "Pseudomonadati", "Thermodesulfobacteriota", "Desulfovibrionia", "Desulfovibrionales", "Desulfovibrionaceae", "Desulfovibrio", "Desulfovibrio sp. G11"], [2936701, "PRJNA316313_P_NODE_128823_length_187_cov_8.833333_g127437_i0", "PRJNA316313", "128823", "187", "8.833333", "16.51833271", "Desulfomicrobium orale", "132132", "Bacteria", "Bacteria", "141", "3.32e-29", "", "NTclustered", "gi|987456218|gb|CP014230.1|", "888061", "g127437", "i0", "100", "0.812834224598931", "76", "0", "81", "0", "112", "187", "321371", "321446", "Desulfomicrobium orale DSM 12838 chromosome, complete genome", "blastn", "152", "141", "1", "Bacteria", null, "Pseudomonadati", "Thermodesulfobacteriota", "Desulfovibrionia", "Desulfovibrionales", "Desulfomicrobiaceae", "Desulfomicrobium", "Desulfomicrobium orale"], [2938851, "PRJNA316313_P_NODE_485243_length_150_cov_5.097345_g483857_i0", "PRJNA316313", "485243", "150", "5.097345", "7.6460175", "Geomonas paludis", "2740185", "Bacteria", "Bacteria", "87.9", "3.35e-13", "", "NTclustered", "gi|2233265061|gb|CP096574.1|", "2740185", "g483857", "i0", "88", "0.5", "75", "7", "49", "2", "77", "150", "4280349", "4280276", "Geomonas paludis strain RG22 chromosome, complete genome", "blastn", "75", "87.9", "1", "Bacteria", null, "Pseudomonadati", "Thermodesulfobacteriota", "Desulfuromonadia", "Geobacterales", "Geobacteraceae", "Geomonas", "Geomonas paludis"], [3619274, "PRJNA316313_P_NODE_507683_length_150_cov_2.884956_g506297_i0", "PRJNA316313", "507683", "150", "2.884956", "4.327434", "Pseudomonadati", "3379134", "Bacteria", "Bacteria", "278", "1.85e-70", "", "NTclustered", "gi|2045533567|gb|CP074693.1|", "35554", "g506297", "i0", "100", "55.12", "150", "0", "100", "0", "1", "150", "81591", "81442", "Geobacter sulfurreducens strain YM35 chromosome, complete genome", "blastn", "8268", "278", "1", "Bacteria", null, "Pseudomonadati", "Thermodesulfobacteriota", "Desulfuromonadia", "Geobacterales", "Geobacteraceae", "Geobacter", "Geobacter sulfurreducens"], [8040951, "PRJNA316313_P_NODE_389747_length_155_cov_4.406780_g388361_i0", "PRJNA316313", "389747", "155", "4.40678", "6.830509", "Citrifermentans bemidjiense", "225194", "Bacteria", "Bacteria", "110", "7.46e-20", "", "NTclustered", "gi|197085762|gb|CP001124.1|", "404380", "g388361", "i0", "89.655", "52.1548387096774", "87", "8", "56", "1", "69", "155", "2088963", "2089048", "Geobacter bemidjiensis Bem, complete genome", "blastn", "8084", "110", "1", "Bacteria", null, "Pseudomonadati", "Thermodesulfobacteriota", "Desulfuromonadia", "Geobacterales", "Geobacteraceae", "Citrifermentans", "Citrifermentans bemidjiense"], [9315157, "PRJNA316313_P_NODE_310348_length_187_cov_2.360000_g308962_i0", "PRJNA316313", "310348", "187", "2.36", "4.4132", "Pseudodesulfovibrio portus", "231439", "Bacteria", "Bacteria", "60.2", "9.57e-5", "", "NTclustered", "gi|2296712847|dbj|AP026708.1|", "231439", "g308962", "i0", "100", "0.171122994652406", "32", "0", "17", "0", "117", "148", "2164233", "2164202", "Pseudodesulfovibrio portus JCM 14722 DNA, complete genome", "blastn", "32", "60.2", "1", "Bacteria", null, "Pseudomonadati", "Thermodesulfobacteriota", "Desulfovibrionia", "Desulfovibrionales", "Desulfovibrionaceae", "Pseudodesulfovibrio", "Pseudodesulfovibrio portus"], [9315403, "PRJNA316313_P_NODE_349488_length_179_cov_2.746479_g348102_i0", "PRJNA316313", "349488", "179", "2.746479", "4.91619741", "Thermodesulfobacteriota bacterium", "2202153", "Bacteria", "Bacteria", "100", "5.34e-17", "", "NTclustered", "gi|2556892445|gb|CP129479.1|", "2202153", "g348102", "i0", "85.714", "323.860335195531", "98", "10", "56", "4", "40", "135", "1898904", "1898999", "MAG: Thermodesulfobacteriota bacterium isolate cMAG.17 chromosome, complete genome", "blastn", "57971", "100", "1", "Bacteria", null, "Pseudomonadati", "Thermodesulfobacteriota", null, null, null, null, "Thermodesulfobacteriota bacterium"], [11864926, "PRJNA316313_P_NODE_151890_length_187_cov_4.606667_g150504_i0", "PRJNA316313", "151890", "187", "4.606667", "8.61446729", "Megalodesulfovibrio gigas", "879", "Bacteria", "Bacteria", "54.7", "0.004", "", "NTclustered", "gi|544197442|gb|CP006585.1|", "1121448", "g150504", "i0", "100", "0.155080213903743", "29", "0", "16", "0", "137", "165", "2725983", "2725955", "Desulfovibrio gigas DSM 1382 = ATCC 19364 genome", "blastn", "29", "54.7", "1", "Bacteria", null, "Pseudomonadati", "Thermodesulfobacteriota", "Desulfovibrionia", "Desulfovibrionales", "Desulfovibrionaceae", "Megalodesulfovibrio", "Megalodesulfovibrio gigas"], [15689343, "PRJNA316313_P_NODE_22593_length_355_cov_10.553459_g21224_i0", "PRJNA316313", "22593", "355", "10.553459", "37.46477945", "Geobacter sp. SVR", "2495594", "Bacteria", "Bacteria", "219", "3.13e-52", "", "NTclustered", "gi|1976315905|dbj|AP024469.1|", "2495594", "g21224", "i0", "82.308", "67.3211267605634", "260", "38", "72", "8", "87", "342", "3337298", "3337553", "Geobacter sp. SVR DNA, complete genome", "blastn", "23899", "219", "1", "Bacteria", null, "Pseudomonadati", "Thermodesulfobacteriota", "Desulfuromonadia", "Geobacterales", "Geobacteraceae", "Geobacter", "Geobacter sp. SVR"], [15690624, "PRJNA316313_P_NODE_439913_length_151_cov_3.956140_g438527_i0", "PRJNA316313", "439913", "151", "3.95614", "5.9737714", "Desulfovibrio piger", "901", "Bacteria", "Bacteria", "60.2", "7.36e-5", "", "NTclustered", "gi|1102127722|emb|LT630450.1|", "901", "g438527", "i0", "94.737", "0.251655629139073", "38", "2", "25", "0", "12", "49", "1348438", "1348401", "Desulfovibrio piger isolate FI11049 genome assembly, chromosome: I", "blastn", "38", "60.2", "1", "Bacteria", null, "Pseudomonadati", "Thermodesulfobacteriota", "Desulfovibrionia", "Desulfovibrionales", "Desulfovibrionaceae", "Desulfovibrio", "Desulfovibrio piger"], [18238559, "PRJNA316313_P_NODE_274435_length_187_cov_2.593333_g273049_i0", "PRJNA316313", "274435", "187", "2.593333", "4.84953271", "Desulfovibrio ferrophilus", "241368", "Bacteria", "Bacteria", "52.8", "0.016", "", "NTclustered", "gi|1352279194|dbj|AP017378.1|", "241368", "g273049", "i0", "100", "0.149732620320856", "28", "0", "15", "0", "34", "61", "592829", "592802", "Desulfovibrio ferrophilus DNA, complete genome", "blastn", "28", "52.8", "1", "Bacteria", null, "Pseudomonadati", "Thermodesulfobacteriota", "Desulfovibrionia", "Desulfovibrionales", "Desulfovibrionaceae", "Desulfovibrio", "Desulfovibrio ferrophilus"], [22064281, "PRJNA316313_P_NODE_424718_length_151_cov_4.649123_g423332_i0", "PRJNA316313", "424718", "151", "4.649123", "7.02017573", "Desulfomicrobium sp. ZS1", "2952228", "Bacteria", "Bacteria", "62.1", "2.05e-5", "", "NTclustered", "gi|2269306666|gb|CP100351.1|", "2952228", "g423332", "i0", "92.857", "0.278145695364238", "42", "3", "28", "0", "33", "74", "3719120", "3719079", "Desulfomicrobium sp. ZS1 chromosome, complete genome", "blastn", "42", "62.1", "1", "Bacteria", null, "Pseudomonadati", "Thermodesulfobacteriota", "Desulfovibrionia", "Desulfovibrionales", "Desulfomicrobiaceae", "Desulfomicrobium", "Desulfomicrobium sp. ZS1"]], "truncated": false, "filtered_table_rows_count": 14, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "blastn", "p1": "PRJNA316313", "p2": "Thermodesulfobacteriota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA316313&tax_phylum=Thermodesulfobacteriota", "results": [{"value": "PRJNA316313", "label": "PRJNA316313", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&tax_phylum=Thermodesulfobacteriota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA316313&tax_phylum=Thermodesulfobacteriota", "results": [{"value": "blastn", "label": "blastn", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA316313&tax_phylum=Thermodesulfobacteriota", "selected": true}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA316313&tax_phylum=Thermodesulfobacteriota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA316313&tax_phylum=Thermodesulfobacteriota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA316313&tax_phylum=Thermodesulfobacteriota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA316313&tax_phylum=Thermodesulfobacteriota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA316313&tax_phylum=Thermodesulfobacteriota&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA316313&tax_phylum=Thermodesulfobacteriota", "results": [{"value": "Thermodesulfobacteriota", "label": "Thermodesulfobacteriota", "count": 14, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA316313", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 303.38693398516625}