{"database": "metadata", "table": "contig_metadata", "is_view": false, "human_description_en": "where analysis = \"blastn\", bioproject = \"PRJNA1035005\" and tax_phylum = \"Campylobacterota\"", "rows": [[168903, "PRJNA1035005_P_NODE_50301_length_256_cov_2.453552_g49895_i0", "PRJNA1035005", "50301", "256", "2.453552", "6.28109312", "Campylobacter gracilis", "824", "Bacteria", "Bacteria", "368", "2.03e-97", "", "NTclustered", "gi|909717139|gb|CP012196.1|", "824", "g49895", "i0", "92.578", "3", "256", "19", "100", "0", "1", "256", "9200", "8945", "Campylobacter gracilis strain ATCC 33236, complete genome", "blastn", "768", "368", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter gracilis"], [2719602, "PRJNA1035005_P_NODE_85243_length_242_cov_0.923077_g84837_i0", "PRJNA1035005", "85243", "242", "0.923077", "2.23384634", "Wolinella succinogenes", "844", "Bacteria", "Bacteria", "409", "1.12e-109", "", "NTclustered", "gi|34482172|emb|BX571657.1|", "844", "g84837", "i0", "97.107", "2", "242", "7", "100", "0", "1", "242", "198207", "198448", "Wolinella succinogenes, complete genome; segment 1/7", "blastn", "484", "409", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Wolinella", "Wolinella succinogenes"], [3995559, "PRJNA1035005_P_NODE_65384_length_249_cov_0.886364_g64978_i0", "PRJNA1035005", "65384", "249", "0.886364", "2.20704636", "Wolinella succinogenes", "844", "Bacteria", "Bacteria", "416", "6.939999999999999e-112", "", "NTclustered", "gi|34483186|emb|BX571660.1|", "844", "g64978", "i0", "96.787", "2", "249", "8", "100", "0", "1", "249", "101661", "101909", "Wolinella succinogenes, complete genome; segment 4/7", "blastn", "498", "416", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Wolinella", "Wolinella succinogenes"], [6547296, "PRJNA1035005_P_NODE_90506_length_203_cov_4.369231_g90099_i0", "PRJNA1035005", "90506", "203", "4.369231", "8.86953893", "Campylobacter concisus", "199", "Bacteria", "Bacteria", "309", "9.51e-80", "", "NTclustered", "gi|2699822930|gb|CP147773.1|", "199", "g90099", "i0", "94.089", "10.9704433497537", "203", "12", "100", "0", "1", "203", "1323912", "1324114", "Campylobacter concisus strain RMIT-O23 chromosome", "blastn", "2227", "309", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter concisus"], [7821571, "PRJNA1035005_P_NODE_58147_length_251_cov_2.415730_g57741_i0", "PRJNA1035005", "58147", "251", "2.41573", "6.0634823", "Wolinella succinogenes", "844", "Bacteria", "Bacteria", "414", "2.52e-111", "", "NTclustered", "gi|34482852|emb|BX571659.1|", "844", "g57741", "i0", "96.774", "1.97609561752988", "248", "8", "99", "0", "1", "248", "281710", "281957", "Wolinella succinogenes, complete genome; segment 3/7", "blastn", "496", "414", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Wolinella", "Wolinella succinogenes"], [7821800, "PRJNA1035005_P_NODE_85167_length_242_cov_0.923077_g84761_i0", "PRJNA1035005", "85167", "242", "0.923077", "2.23384634", "Campylobacter concisus", "199", "Bacteria", "Bacteria", "375", "1.14e-99", "", "NTclustered", "gi|1938724023|gb|CP060707.1|", "199", "g84761", "i0", "94.628", "11", "242", "13", "100", "0", "1", "242", "1217823", "1217582", "Campylobacter concisus strain P1CDO2 chromosome, complete genome", "blastn", "2662", "375", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter concisus"], [9096766, "PRJNA1035005_P_NODE_85008_length_242_cov_0.923077_g84602_i0", "PRJNA1035005", "85008", "242", "0.923077", "2.23384634", "Sulfurospirillum sp. 'SP'", "3023479", "Bacteria", "Bacteria", "364", "2.4699999999999992e-96", "", "NTclustered", "gi|2591884127|gb|CP118373.1|", "3023479", "g84602", "i0", "93.802", "2", "242", "15", "100", "0", "1", "242", "2561610", "2561851", "Sulfurospirillum sp. 'SP' chromosome, complete genome", "blastn", "484", "364", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Sulfurospirillaceae", "Sulfurospirillum", "Sulfurospirillum sp. 'SP'"], [11647693, "PRJNA1035005_P_NODE_81950_length_243_cov_0.917647_g81544_i0", "PRJNA1035005", "81950", "243", "0.917647", "2.22988221", "Campylobacter showae", "204", "Bacteria", "Bacteria", "383", "6.84e-102", "", "NTclustered", "gi|1483583555|emb|LT631479.1|", "204", "g81544", "i0", "95.417", "23.3497942386831", "240", "11", "99", "0", "1", "240", "1626008", "1626247", "Campylobacter showae strain B91_TPP genome assembly, chromosome: I", "blastn", "5674", "383", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter showae"], [12922916, "PRJNA1035005_P_NODE_87351_length_237_cov_3.695122_g86945_i0", "PRJNA1035005", "87351", "237", "3.695122", "8.75743914", "Campylobacter concisus", "199", "Bacteria", "Bacteria", "196", "9.29e-46", "", "NTclustered", "gi|1938721615|gb|CP049265.1|", "199", "g86945", "i0", "97.391", "1.89029535864979", "115", "3", "49", "0", "1", "115", "287", "401", "Campylobacter concisus strain P11CDO-S1 plasmid pSA2, complete sequence", "blastn", "448", "196", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter concisus"], [16745844, "PRJNA1035005_P_NODE_42594_length_266_cov_1.616580_g42188_i0", "PRJNA1035005", "42594", "266", "1.61658", "4.3001028", "Campylobacter concisus", "199", "Bacteria", "Bacteria", "481", "2.62e-131", "", "NTclustered", "gi|1935893765|gb|CP049234.1|", "199", "g42188", "i0", "99.248", "11", "266", "2", "100", "0", "1", "266", "267640", "267905", "Campylobacter concisus strain P15UCO-S2 chromosome, complete genome", "blastn", "2926", "481", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter concisus"], [16746105, "PRJNA1035005_P_NODE_78894_length_244_cov_0.912281_g78488_i0", "PRJNA1035005", "78894", "244", "0.912281", "2.22596564", "Campylobacter ureolyticus", "827", "Bacteria", "Bacteria", "440", "4.019999999999999e-119", "", "NTclustered", "gi|909715533|gb|CP012195.1|", "1032069", "g78488", "i0", "99.18", "4", "244", "2", "100", "0", "1", "244", "224391", "224634", "Campylobacter ureolyticus RIGS 9880 chromosome, complete genome", "blastn", "976", "440", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter ureolyticus"], [17585571, "PRJNA1035005_P_NODE_12874_length_337_cov_2.193182_g12469_i0", "PRJNA1035005", "12874", "337", "2.193182", "7.39102334", "Campylobacter", "194", "Bacteria", "Bacteria", "621", "1.9299999999999997e-173", "", "NTclustered", "gi|1207769205|gb|MF351718.1|", "199", "g12469", "i0", "100", "248.611275964392", "336", "0", "99", "0", "1", "336", "393", "728", "Campylobacter concisus strain H11O-S1 23S ribosomal RNA gene, partial sequence", "blastn", "83782", "621", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter concisus"], [19294748, "PRJNA1035005_P_NODE_55796_length_252_cov_1.648045_g55390_i0", "PRJNA1035005", "55796", "252", "1.648045", "4.1530734", "Arcobacter sp. 15-2", "3374109", "Bacteria", "Bacteria", "466", "6.89e-127", "", "NTclustered", "gi|2862971141|dbj|AP038804.1|", "3374109", "g55390", "i0", "100", "351.956349206349", "252", "0", "100", "0", "1", "252", "339890", "340141", "Arcobacter sp. 15-2 DNA, complete genome", "blastn", "88693", "466", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Arcobacteraceae", "Arcobacter", "Arcobacter sp. 15-2"], [20569937, "PRJNA1035005_P_NODE_31057_length_281_cov_1.500000_g30651_i0", "PRJNA1035005", "31057", "281", "1.5", "4.215", "Campylobacter concisus", "199", "Bacteria", "Bacteria", "503", "5.95e-138", "", "NTclustered", "gi|1935895612|gb|CP049232.1|", "199", "g30651", "i0", "98.932", "23.3629893238434", "281", "3", "100", "0", "1", "281", "1353502", "1353782", "Campylobacter concisus strain H9O-S2 chromosome, complete genome", "blastn", "6565", "503", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter concisus"], [22684709, "PRJNA1035005_P_NODE_51878_length_254_cov_2.530387_g51472_i0", "PRJNA1035005", "51878", "254", "2.530387", "6.42718298", "Campylobacter", "194", "Bacteria", "Bacteria", "398", "2.5699999999999995e-106", "", "NTclustered", "gi|1938719709|gb|CP049264.1|", "199", "g51472", "i0", "94.882", "17.6496062992126", "254", "13", "100", "0", "1", "254", "545801", "546054", "Campylobacter concisus strain P11CDO-S1 chromosome, complete genome", "blastn", "4483", "398", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter concisus"], [23121319, "PRJNA1035005_P_NODE_71079_length_247_cov_0.896552_g70673_i0", "PRJNA1035005", "71079", "247", "0.896552", "2.21448344", "Helicobacter canis", "29419", "Bacteria", "Bacteria", "435", "1.9e-117", "", "NTclustered", "gi|1721134163|emb|LR698964.1|", "29419", "g70673", "i0", "98.381", "1", "247", "4", "100", "0", "1", "247", "1849477", "1849231", "Helicobacter canis isolate MGYG-HGUT-01463 genome assembly, chromosome: 1", "blastn", "247", "435", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Helicobacteraceae", "Helicobacter", "Helicobacter canis"], [23121378, "PRJNA1035005_P_NODE_77399_length_245_cov_0.906977_g76993_i0", "PRJNA1035005", "77399", "245", "0.906977", "2.22209365", "Campylobacter concisus", "199", "Bacteria", "Bacteria", "403", "5.299999999999998e-108", "", "NTclustered", "gi|1063302220|gb|CP000792.2|", "360104", "g76993", "i0", "96.327", "16.9918367346939", "245", "9", "100", "0", "1", "245", "1042997", "1043241", "Campylobacter concisus 13826 chromosome, complete genome", "blastn", "4163", "403", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter concisus"], [23960121, "PRJNA1035005_P_NODE_23219_length_291_cov_1.839450_g22813_i0", "PRJNA1035005", "23219", "291", "1.83945", "5.3527995", "Campylobacter", "194", "Bacteria", "Bacteria", "252", "2.48e-62", "", "NTclustered", "gi|1376251231|gb|CP021642.1|", "199", "g22813", "i0", "96.104", "26.7216494845361", "154", "6", "95", "0", "138", "291", "384785", "384632", "Campylobacter concisus strain P2CDO4 chromosome, complete genome", "blastn", "7776", "252", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter concisus"], [23960323, "PRJNA1035005_P_NODE_88459_length_232_cov_2.974843_g88053_i0", "PRJNA1035005", "88459", "232", "2.974843", "6.90163576", "Campylobacter", "194", "Bacteria", "Bacteria", "424", "3.82e-114", "", "NTclustered", "gi|1483583529|emb|LT631453.1|", "204", "g88053", "i0", "99.569", "248.331896551724", "232", "1", "100", "0", "1", "232", "390969", "390738", "Campylobacter showae strain B91_SCBr genome assembly, chromosome: I", "blastn", "57613", "424", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter showae"], [25233951, "PRJNA1035005_P_NODE_10920_length_354_cov_5.672598_g10515_i0", "PRJNA1035005", "10920", "354", "5.672598", "20.08099692", "Campylobacter", "194", "Bacteria", "Bacteria", "649", "0", "", "NTclustered", "gi|1207769201|gb|MF351714.1|", "199", "g10515", "i0", "99.718", "221.186440677966", "354", "1", "100", "0", "1", "354", "1501", "1148", "Campylobacter concisus strain H3O1 23S ribosomal RNA gene, partial sequence", "blastn", "78300", "649", "1", "Bacteria", null, "Pseudomonadati", "Campylobacterota", "Epsilonproteobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter concisus"]], "truncated": false, "filtered_table_rows_count": 20, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "query", "bioproject", "node", "length", "coverage", "rel_abundance", "taxname_lca", "taxid_lca", "taxoncategory", "taxoncategorysimple", "bits", "evalue", "lowcoverage_flag", "analysis_used", "target", "taxid", "gene", "allele", "pident", "sumperc_cov", "alnlen", "mismatch", "qcov", "gapopen", "qstart", "qend", "tstart", "tend", "target_title", "analysis", "sumalnlen", "maxbits", "bits_percmax", "tax_superkingdom", "tax_clade", "tax_kingdom", "tax_phylum", "tax_class", "tax_order", "tax_family", "tax_genus", "tax_species"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [query], bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species from contig_metadata where \"analysis\" = :p0 and \"bioproject\" = :p1 and \"tax_phylum\" = :p2 order by rowid limit 101", "params": {"p0": "blastn", "p1": "PRJNA1035005", "p2": "Campylobacterota"}}, "facet_results": {"bioproject": {"name": "bioproject", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA1035005&tax_phylum=Campylobacterota", "results": [{"value": "PRJNA1035005", "label": "PRJNA1035005", "count": 20, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "analysis": {"name": "analysis", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA1035005&tax_phylum=Campylobacterota", "results": [{"value": "blastn", "label": "blastn", "count": 20, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?bioproject=PRJNA1035005&tax_phylum=Campylobacterota", "selected": true}], "truncated": false}, "tax_superkingdom": {"name": "tax_superkingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA1035005&tax_phylum=Campylobacterota", "results": [{"value": "Bacteria", "label": "Bacteria", "count": 20, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA1035005&tax_phylum=Campylobacterota&tax_superkingdom=Bacteria", "selected": false}], "truncated": false}, "tax_clade": {"name": "tax_clade", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA1035005&tax_phylum=Campylobacterota", "results": [], "truncated": false}, "tax_kingdom": {"name": "tax_kingdom", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA1035005&tax_phylum=Campylobacterota", "results": [{"value": "Pseudomonadati", "label": "Pseudomonadati", "count": 20, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA1035005&tax_phylum=Campylobacterota&tax_kingdom=Pseudomonadati", "selected": false}], "truncated": false}, "tax_phylum": {"name": "tax_phylum", "type": "column", "hideable": false, "toggle_url": "/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA1035005&tax_phylum=Campylobacterota", "results": [{"value": "Campylobacterota", "label": "Campylobacterota", "count": 20, "toggle_url": "http://metadata.rnaquarium.org/metadata/contig_metadata.json?analysis=blastn&bioproject=PRJNA1035005", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 134.1647869994631}